Apple genome, pan-genome and variome resources
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We developed haploid consensus and phased diploid genome assemblies for Malus domestica
cv. Gala (PI 392303), M.
sieversii (PI 613981) and
M. sylvestris (PI 633825),
using Illumina paired-end and mate-pair reads, 10x Genomics linked-reads and PacBio HiFi reads. The assembly statistics can be
accessed here. We also deep sequenced the genomes
of 91 representative accessions
from the three Malus species: cultivated apple, M. domestica, and the two wild progenitors, M.sieversii and
M. sylvestris. These deep genome sequencing data were used to construct pan-genomes for the three Malus species, and a
high-resolution apple variome comprising SNPs and SVs. Please cite the following paper if you use the apple genomic data provided here: Sun X, Jiao C, Schwaninger H, Chao CT, Ma Y, Duan N, Khan A, Ban S, Xu K, Cheng L, Zhong G-Y, Fei Z (2020) Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication. Nature Genetics |
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Genome assemblies Haploid consensus assemblies:
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