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• Plant MetGenMAP manual (html | pdf)


• Paper describing the system:
  Joung JG, Corbett AM, Fellman SM, Tieman DM, Klee HJ, Giovannoni JJ, Fei Z (2009) Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology. Plant Physiol 151:1758-1768


• Example input datasets:
  
  1. expression data for Arabidopsis AGI genome locus (ratio)
  2. expression data for Arabidopsis ATH1 genome array (fold change*)
  3. expression data for rice genome locus (ratio)
  4. expression data for rice Affymetrix genome array (fold change*)
  5. expression data for tomato genome locus (ratio)
  6. expression data for tomato TOM1 cDNA array (ratio) and Tomato metabolite data (fold change*) (expression and metabolite data can be uploaded and analyzed at the same time)
  7. expression data for tomato TOM2 oligo array (ratio)
  8. expression data for tomato Affymetrix genome array (ratio)
  9. expression data for maize genome locus (ratio)
  10. expression data for grape genome locus (ratio)
  11. expression data for watermelon genome locus (ratio)
  12. expression data for melon genome locus (ratio)
  13. expression data for soybean genome locus (ratio)
  14. expression data for sorghum genome locus (ratio)
  15. expression data for Brachypodium genome locus (ratio)
  16. expression data for papaya genome locus (ratio)
  17. expression data for apple genome locus (ratio)
  18. expression data for strawberry genome locus (ratio)
  19. expression data for banana genome locus (ratio)
  20. expression data for Chinese cabbage genome locus (ratio)
  
  *fold change: fold change is equal to ratio if ratio is greater than one; and equal to negative reciprocal of the ratio (-1/ratio) if ratio is less than one.


• Metabolite synonyms