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Plant MetGenMAP manual

Introduction
Input Data Format
Uploading and Processing
    Obtaining an account
    Upload Form
    Data uploading
    Processing Datasets
Project Management
Browsing Pathways
Promoter analysis
Analyzing Dataset
    Changed Pathways
    GO Enrichment
    Functional classification
Searching
Adding New Platforms
Update Pathways and Genes
Contacts

Project Management

To access the project management page after logging in, mouse over the "Data Manage" tab in the menu bar and select the "Project Management" option. A list of all available projects for the current user is shown. For each project, a list of action links is provided.



  • Process - Allows the user to process the dataset. For more info on processing datasets, see the section of "Processing Datasets" described above. If the dataset has already been processed, the message "Processed" appears instead of the link.


  • Summary - Provides a summary of the project - the number of up- and down-regulated genes/metabolites in each condition, with each number linked to the list of the corresponding genes/metabolites. The "Summary" action is only active when the dataset has been processed.



  • Select - Selects a particular project as the current working project for analysis. Once selected, the name of the selected project appears on the top right corner of the menu bar as "Project: XXX". This is visible in the menu bar no matter what page the user is on and is a useful reminder of which dataset is being explored. The "Select" action is only active when the dataset has been processed.
    Note: The "Browse", "Analyze", and "Search" menu options are only functional if a project dataset is selected.


  • Edit parameter - Allows users to change the parameters for a particular dataset (e.g., up- or down-regulation cutoff, p value cutoff) which are set at the "Data uploading" step. The dataset must be re-processed after changing parameters.


  • Delete - Permanently deletes the project from the system. Users will be asked to confirm the deletion.



This site is supported by NSF IOS-0501778 and IOS-0923312