Identify Significantly Changed Pathways

Since in each condition, the statistical test (hypergeometric test) to check the significance of pathway changes is performed on a set of pathways simultaneously, the raw p values need to be corrected for multiple testing. Plant MetGenMAP provides the most commonly used multiple test correction method - False Discovery Rate (FDR), as well as Bonferroni correction method. Based on the user specified parameters, a list of significantly changed pathways is returned.