Plant Secondary Phased siRNA Database

Select plant species

Arabidopsis lyrata	Arabidopsis thaliana	Amborella trichopoda
Carica papaya	Chlamydomonas reinhardtii	Cycas rumphii
Citrus sinensis	Ginkgo biloba	Musa acuminata
Mimulus guttatus	Nicotiana tabacum	Oryza rufipogon
Oryza rufipogon (24nt)	Oryza sativa L. ssp. indica	Oryza sativa L. ssp. japonica
Physcomitrella patens	Populus trichocarpa	Panicum virgatum
Sorghum bicolor	Sorghum bicolor (24nt)	Setaria italica
Setaria italica (24nt)	Solanum lycopersicum	Solanum tuberosum
Volvox carteri	Vitis vinifera	Zea mays

List of phased locus for selected plant species

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower1	Flower2
Aly001	473977	518	706	exon	473977	ARGONAUTE 1	4.54	7.34	7.63
Aly002	492894	465	695	exon	492894	Zinc transporter	0	363.93	295.88
Aly003	887641	394	582	exon	887641	TIR-NBS-LRR resistance protein	14.41	3.78	3.3
Aly004	887642	394	582	exon	887642	TIR-NBS-LRR resistance protein	14.41	3.78	3.3
Aly005	903839	299	487	exon	903839	TIR-NBS-LRR resistance protein	5.87	23.34	24.91
Aly006	914883	268	456	exon	914883	TIR-NBS-LRR resistance protein	5.6	0.22	0.25
Aly007	916001	394	582	exon	916001	TIR-NBS-LRR resistance protein	13.87	3.78	3.3
Aly008	940862	155	343	exon	940862	zinc induced facilitator 1	6.14	66.92	60.24
Aly009	945449	187	396	exon	945449	Inositol oxygenase	0	135.83	129.64
Aly010	scaffold_1	13187615	13187866	exon	g473204	Chlorophyll A-B binding protein	64.04	0.89	0.76
Aly011	scaffold_1	18150634	18150864	exon	g922794	Nitrate reductase	169.97	0	0.25
Aly012	scaffold_1	24576795	24576983	exon	g473977	ARGONAUTE 1	4.8	7.78	8.13
Aly013	scaffold_1	25808424	25808675	intergenic	NA	NA	75.78	42.02	42.96
Aly014	scaffold_1	25815647	25815919	intergenic	NA	NA	131.28	50.02	49.06
Aly015	scaffold_1	5126174	5126362	intergenic	NA	NA	8.81	0.67	0.25
Aly016	scaffold_1	5319412	5319747	exon	g920146	AUXIN SIGNALING F-BOX 3	311.91	295.9	315.71
Aly017	scaffold_163	15258	15446	intergenic	NA	NA	151.02	100.49	103.71
Aly018	scaffold_2	1055639	1055827	intergenic	NA	NA	21.88	0.22	1.02
Aly019	scaffold_2	1082559	1082916	intergenic	NA	NA	135.55	7.11	5.85
Aly020	scaffold_2	1201433	1201621	intergenic	NA	NA	28.82	20.45	24.66
Aly021	scaffold_2	1386795	1386983	intergenic	NA	NA	0.8	2.45	1.02
Aly022	scaffold_2	1418286	1418558	intergenic	NA	NA	121.4	35.57	33.3
Aly023	scaffold_2	1454156	1454344	intergenic	NA	NA	17.34	1.56	2.54
Aly024	scaffold_2	1559731	1559940	intergenic	NA	NA	47.49	14.67	15.51
Aly025	scaffold_2	1575518	1575790	intergenic	NA	NA	123	35.35	33.05
Aly026	scaffold_2	1611833	1612252	intergenic	NA	NA	281.76	174.52	182.76
Aly027	scaffold_2	17371639	17371827	exon	g927082	NA	6.67	4.67	4.58
Aly028	scaffold_2	700615	700908	intergenic	NA	NA	463.47	5.34	3.81
Aly029	scaffold_2	729582	729770	intergenic	NA	NA	333.79	22.68	20.59
Aly030	scaffold_2	7616768	7616998	exon and intron	g907740	TIR-NBS-LRR resistance protein	51.23	5.11	3.56
Aly031	scaffold_2	7617530	7617718	exon	g907740	TIR-NBS-LRR resistance protein	27.22	4	4.58
Aly032	scaffold_20	31517	31705	exon	g887643	TIR-NBS-LRR resistance protein	13.34	3.33	2.8
Aly033	scaffold_20	47957	48145	exon	g887645	TIR-NBS-LRR resistance protein	10.94	0	0
Aly034	scaffold_3	11078819	11079007	exon	g930429	Unknown protein	2.94	5.11	4.32
Aly035	scaffold_3	6283039	6283227	exon	g929286	TCP transcription factor	0	5.78	3.3
Aly036	scaffold_3	7321883	7322092	intergenic	NA	TAS3a	296.17	315.46	385.36
Aly037	scaffold_4	19240997	19241584	intergenic	NA	TAS2	10606.4	1047.98	973.05
Aly038	scaffold_4	22778437	22778625	exon	g483845	Zinc transporter/ Cation efflux family	0.27	2.89	1.78
Aly039	scaffold_4	955206	955562	exon	g481105	Basic-leucine zipper (bZIP) transcription factor family protein	1079.29	0	0.51
Aly040	scaffold_5	1230202	1230390	exon	g484193	ammonium transporter 1	3.74	0.67	0.51
Aly041	scaffold_5	20990601	20990789	exon	g939389	F-box family protein	5.34	2.89	5.08
Aly042	scaffold_5	2578235	2578444	intergenic	NA	NA	34.15	22.01	21.1
Aly043	scaffold_5	3125150	3125401	exon	g484456	AUXIN SIGNALING F-BOX 2	70.71	74.03	84.39
Aly044	scaffold_6	23263025	23263360	exon	g490244	AUXIN SIGNALING F-BOX 5	124.34	175.85	165.99
Aly045	scaffold_6	5624388	5624682	exon	g940862	zinc induced facilitator 1	15.48	102.26	92.78
Aly046	scaffold_6	6831554	6831742	exon	g488523	Pentatricopeptide repeat-containing protein	140.35	18.45	16.27
Aly047	scaffold_6	6832207	6832395	exon	g488523	Pentatricopeptide repeat-containing protein	8.54	1.11	1.53
Aly048	scaffold_7	10086866	10087096	exon and intron	g492894	Zinc transporter	0	355.48	284.44
Aly049	scaffold_7	10818282	10818470	intergenic	NA	NA	21.08	8.23	8.13
Aly050	scaffold_7	21308296	21308484	intron	g891488	TIR-NBS-LRR resistance protein	10.14	0.22	0.25
Aly051	scaffold_7	21418704	21418935	exon	g947558	Cation/H(+) antiporter 19	0	12.67	12.2
Aly052	scaffold_7	21850632	21850820	exon	g891572	TIR-NBS-LRR resistance protein	14.94	1.78	0.76
Aly053	scaffold_7	21855925	21856134	exon	g891573	TIR-NBS-LRR resistance protein	44.29	4.67	2.03
Aly054	scaffold_7	220737	220925	exon	g490641	Pollen Ole e 1 like	3.74	8.89	11.95
Aly055	scaffold_7	884699	884887	exon and intron	g490793	Basic-leucine zipper (bZIP) transcription factor family protein	52.3	0	0
Aly056	scaffold_7	9050999	9051187	exon and intron	g492692	Abnormal spindle-like microcephaly-associated protein-like protein	1.33	2.89	2.29

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	leaf
Ath001	AT1G48410	925	1113	exon	AT1G48410	ARGONAUTE 1	11.3
Ath002	AT1G50055	353	688	exon	AT1G50055	TAS1b	765.7
Ath003	AT1G62860	635	823	exon	AT1G62860	Pentatricopeptide repeat-containing protein (pseudogene)	31.42
Ath004	AT1G66725	5	193	exon	AT1G66725	MIR163	12.4
Ath005	AT2G27400	358	546	exon	AT2G27400	TAS1a	773.97
Ath006	AT2G39675	253	588	exon	AT2G39675	TAS1c	739.24
Ath007	AT3G23690	396	584	exon	AT3G23690	basic helix-loop-helix (bHLH) protein	4.69
Ath008	AT5G43740	638	826	exon	AT5G43740	Cc-nbs-lrr resistance protein	4.96
Ath009	AT5G49615	192	380	exon	AT5G49615	TAS3b	47.13
Ath010	Chr1	18549357	18549692	intergenic	AT1G50055	TAS1B	763.5
Ath011	Chr1	23178505	23178693	exon	AT1G62590	Pentatricopeptide repeat-containing protein	9.37
Ath012	Chr1	23299603	23300232	exon	AT1G62910	Pentatricopeptide repeat-containing protein	769.01
Ath013	Chr1	23302125	23302418	exon	AT1G62914	Pentatricopeptide repeat-containing protein	103.36
Ath014	Chr1	23386525	23386734	exon	AT1G63070	Pentatricopeptide repeat-containing protein	156.56
Ath015	Chr1	23390116	23390325	exon	AT1G63080	Pentatricopeptide repeat-containing protein	157.94
Ath016	Chr1	23413349	23414020	exon	AT1G63130	Pentatricopeptide repeat-containing protein	865.2
Ath017	Chr1	23419942	23420340	exon	AT1G63150	Pentatricopeptide repeat-containing protein	220.78
Ath018	Chr1	23490164	23490373	exon	AT1G63330	Pentatricopeptide repeat-containing protein	27.01
Ath019	Chr1	23507869	23508183	exon	AT1G63400	Pentatricopeptide repeat-containing protein	88.48
Ath020	Chr1	24883935	24884123	intergenic	AT1G66725	MIR163	12.4
Ath021	Chr1	4295912	4296163	exon	AT1G12620	Pentatricopeptide repeat-containing protein	18.19
Ath022	Chr1	4354541	4354855	exon	AT1G12775	Pentatricopeptide repeat-containing protein	44.93
Ath023	Chr2	11721925	11722113	intergenic	AT2G27400	TAS1a	772.59
Ath024	Chr2	16537692	16538006	intergenic	AT2G39675	TAS1c	738.69
Ath025	Chr3	9870186	9870374	exon	AT3G26810	AUXIN SIGNALING F-BOX 2	29.49
Ath026	Chr4	9096320	9096508	exon	AT4G16060	Unknown protein	4.41
Ath027	Chr5	15555440	15555628	exon	AT5G38850	TIR-NBS-LRR resistance protein	30.32
Ath028	Chr5	20134494	20134682	intergenic	AT5G49615	TAS3b	47.13
Ath029	Chr5	24309517	24309705	exon	AT5G60450	Auxin response factor 4	10.47
Ath030	Chr5	5461610	5461798	exon	AT5G16640	Pentatricopeptide repeat-containing protein	15.71

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf
Atr001	AmTr_v1.0_scaffold00001	15537892	15538080	exon	evm_27.TU.AmTr_v1.0_scaffold00001.586	TIR-NBS-LRR resistance protein	5.54
Atr002	AmTr_v1.0_scaffold00001	4568409	4568597	intergenic	NA	NA	12.39
Atr003	AmTr_v1.0_scaffold00003	4504105	4504314	intergenic	NA	NA	82.77
Atr004	AmTr_v1.0_scaffold00003	5891140	5891328	intergenic	NA	NA	54.04
Atr005	AmTr_v1.0_scaffold00005	5462797	5462985	intergenic	NA	NA	13.18
Atr006	AmTr_v1.0_scaffold00009	5974094	5974324	exon	evm_27.TU.AmTr_v1.0_scaffold00009.235	Cc-nbs-lrr resistance protein	57.2
Atr007	AmTr_v1.0_scaffold00011	4415644	4415832	intergenic	NA	NA	12.39
Atr008	AmTr_v1.0_scaffold00011	6001256	6001444	intron	evm_27.TU.AmTr_v1.0_scaffold00011.146	Aquaporin	4.22
Atr009	AmTr_v1.0_scaffold00011	911058	911246	intron	evm_27.TU.AmTr_v1.0_scaffold00011.16	Unknown protein	4.74
Atr010	AmTr_v1.0_scaffold00012	3155737	3155925	intergenic	NA	NA	8.44
Atr011	AmTr_v1.0_scaffold00013	774408	774596	exon	evm_27.TU.AmTr_v1.0_scaffold00013.31	Unknown protein	1176.17
Atr012	AmTr_v1.0_scaffold00016	1703577	1703807	exon	evm_27.TU.AmTr_v1.0_scaffold00016.85	AUXIN SIGNALING F-BOX 3	109.39
Atr013	AmTr_v1.0_scaffold00017	4643840	4644175	intergenic	NA	NA	1389.43
Atr014	AmTr_v1.0_scaffold00019	334338	334547	exon	NA	NA	46.39
Atr015	AmTr_v1.0_scaffold00019	336133	336342	intergenic	NA	NA	234.08
Atr016	AmTr_v1.0_scaffold00027	4925587	4925775	intergenic	NA	NA	36.9
Atr017	AmTr_v1.0_scaffold00028	1785347	1785535	intergenic	NA	NA	3.95
Atr018	AmTr_v1.0_scaffold00029	1507072	1507618	intergenic	NA	NA	8056.08
Atr019	AmTr_v1.0_scaffold00032	5215692	5215880	intergenic	NA	NA	2.9
Atr020	AmTr_v1.0_scaffold00036	4196399	4196692	exon	NA	NA	47.97
Atr021	AmTr_v1.0_scaffold00041	1333635	1334139	intergenic	NA	NA	2863.99
Atr022	AmTr_v1.0_scaffold00045	3858498	3858686	exon and intron	evm_27.TU.AmTr_v1.0_scaffold00045.271	Unknown protein	46.66
Atr023	AmTr_v1.0_scaffold00048	4051459	4051710	intergenic	NA	NA	18.19
Atr024	AmTr_v1.0_scaffold00049	2491225	2491413	intergenic	NA	NA	35.85
Atr025	AmTr_v1.0_scaffold00052	3274894	3275082	intergenic	NA	NA	106.76
Atr026	AmTr_v1.0_scaffold00052	3488264	3488452	intergenic	NA	NA	2.9
Atr027	AmTr_v1.0_scaffold00056	1041200	1041703	exon	NA	NA	132.59
Atr028	AmTr_v1.0_scaffold00056	2127552	2127929	exon	evm_27.TU.AmTr_v1.0_scaffold00056.119	TIR-NBS-LRR resistance protein	171.34
Atr029	AmTr_v1.0_scaffold00056	2150844	2151032	exon	NA	NA	323.96
Atr030	AmTr_v1.0_scaffold00059	3024936	3025187	intergenic	NA	NA	12.13
Atr031	AmTr_v1.0_scaffold00061	1507551	1507739	intergenic	NA	NA	34
Atr032	AmTr_v1.0_scaffold00061	3005762	3005950	intergenic	NA	NA	9.23
Atr033	AmTr_v1.0_scaffold00062	2132346	2132534	exon	evm_27.TU.AmTr_v1.0_scaffold00062.133	Cc-nbs-lrr resistance protein	19.77
Atr034	AmTr_v1.0_scaffold00066	618785	618973	intergenic	NA	NA	4.74
Atr035	AmTr_v1.0_scaffold00068	3201702	3201890	intergenic	NA	NA	175.82
Atr036	AmTr_v1.0_scaffold00071	2545100	2545309	exon	evm_27.TU.AmTr_v1.0_scaffold00071.160	Disease resistance protein	191.11
Atr037	AmTr_v1.0_scaffold00071	6076	6264	intergenic	NA	NA	43.76
Atr038	AmTr_v1.0_scaffold00074	1290191	1290379	intergenic	NA	NA	6.06
Atr039	AmTr_v1.0_scaffold00078	1775165	1775731	exon and intron	evm_27.TU.AmTr_v1.0_scaffold00078.107	TIR-NBS-LRR resistance protein	1581.59
Atr040	AmTr_v1.0_scaffold00078	2961533	2961721	exon	evm_27.TU.AmTr_v1.0_scaffold00078.173	Disease resistance protein (NB-ARC/LRR)	43.23
Atr041	AmTr_v1.0_scaffold00078	3130963	3131151	exon	evm_27.TU.AmTr_v1.0_scaffold00078.182	Disease resistance protein	46.39
Atr042	AmTr_v1.0_scaffold00078	533446	533886	exon	evm_27.TU.AmTr_v1.0_scaffold00078.28	NA	337.67
Atr043	AmTr_v1.0_scaffold00078	556220	556408	exon	evm_27.TU.AmTr_v1.0_scaffold00078.29	NA	6.85
Atr044	AmTr_v1.0_scaffold00085	1259927	1260136	exon	evm_27.TU.AmTr_v1.0_scaffold00085.63	Disease resistance protein (NBS-LRR)	193.48
Atr045	AmTr_v1.0_scaffold00085	1687792	1687980	exon	evm_27.TU.AmTr_v1.0_scaffold00085.80	TIR-NBS-LRR resistance protein	498.99
Atr046	AmTr_v1.0_scaffold00085	1770296	1770484	exon	evm_27.TU.AmTr_v1.0_scaffold00085.83	TIR-NBS-LRR resistance protein	90.94
Atr047	AmTr_v1.0_scaffold00085	1930179	1930367	exon	evm_27.TU.AmTr_v1.0_scaffold00085.87	TIR-NBS-LRR resistance protein	493.46
Atr048	AmTr_v1.0_scaffold00087	2115352	2115540	intergenic	NA	NA	32.42
Atr049	AmTr_v1.0_scaffold00088	1862941	1863129	intergenic	NA	NA	17.66
Atr050	AmTr_v1.0_scaffold00099	41729	42001	exon	evm_27.TU.AmTr_v1.0_scaffold00099.2	Disease resistance protein	172.92
Atr051	AmTr_v1.0_scaffold00102	1352007	1352195	intergenic	NA	NA	37.96
Atr052	AmTr_v1.0_scaffold00102	1360983	1361171	intergenic	NA	NA	19.24
Atr053	AmTr_v1.0_scaffold00104	430729	431064	exon	evm_27.TU.AmTr_v1.0_scaffold00104.13	Cc-nbs-lrr resistance protein	839.03
Atr054	AmTr_v1.0_scaffold00105	85337	85525	intergenic	NA	NA	27.94
Atr055	AmTr_v1.0_scaffold00110	1490652	1490840	exon	NA	NA	21.35
Atr056	AmTr_v1.0_scaffold00115	1621624	1621812	intergenic	NA	NA	9.49
Atr057	AmTr_v1.0_scaffold00142	1416328	1416558	intergenic	NA	NA	14.23
Atr058	AmTr_v1.0_scaffold00142	352320	352508	exon	evm_27.TU.AmTr_v1.0_scaffold00142.18	Disease resistance protein	47.71
Atr059	AmTr_v1.0_scaffold00163	321613	321801	intergenic	NA	NA	120.46
Atr060	AmTr_v1.0_scaffold00172	304574	304846	exon	NA	NA	359.55
Atr061	AmTr_v1.0_scaffold00172	329804	329992	exon	NA	NA	114.14
Atr062	AmTr_v1.0_scaffold00190	202488	202697	exon	evm_27.TU.AmTr_v1.0_scaffold00190.11	Disease resistance protein (NBS-LRR)	19.51
Atr063	AmTr_v1.0_scaffold00543	721	909	exon	evm_27.TU.AmTr_v1.0_scaffold00543.1	NA	83.03
Atr064	AmTr_v1.0_scaffold00606	15377	15565	intergenic	NA	NA	61.68
Atr065	AmTr_v1.0_scaffold02171	2554	2742	intergenic	NA	NA	7.38
Atr066	AmTr_v1.0_scaffold02809	2178	2387	intergenic	NA	NA	43.23
Atr067	evm_27.model.AmTr_v1.0_scaffold00078.172	527	715	exon	evm_27.model.AmTr_v1.0_scaffold00078.172	Cc-nbs-lrr resistance protein	44.02

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Healthy leaf	Flower	Infected leaf
Cpa001	contig_26951	16675	16863	exon	evm.TU.contig_26951.4	Helicase (ATP-dependent DNA helicase RecQ)	11.52	9.57	9.99
Cpa002	contig_35773	1029	1217	exon	evm.TU.contig_35773	BTB/POZ domain-containing protein	4.97	16.81	12.8
Cpa003	contig_46939	532	720	exon	evm.TU.contig_46939	RING/U-box superfamily protein	0.79	1.55	8.74
Cpa004	contig_47188	341	760	exon	evm.TU.contig_47188	Coat protein	4993.92	581.25	4906.83
Cpa005	contig_47264	35	328	exon	evm.TU.contig_47264.1	NA	646.26	1.03	127.95
Cpa006	evm.model.supercontig_2.226	233	421	exon	evm.model.supercontig_2.226	PLANT CADMIUM RESISTANCE 2	0.26	2.07	6.24
Cpa007	evm.model.supercontig_23.11	289	477	exon	evm.model.supercontig_23.11	Plasma membrane H+ ATPase	0.79	0.26	4.99
Cpa008	evm.model.supercontig_25.127	845	1033	exon	evm.model.supercontig_25.127	Cytochrome P450 CYP2 subfamily	0.26	2.33	16.85
Cpa009	evm.model.supercontig_260.3	146	334	exon	evm.model.supercontig_260.3	Heat shock protein 70	0.79	6.47	4.68
Cpa010	evm.model.supercontig_27.148	1478	1729	exon	evm.model.supercontig_27.148	Leucine-rich repeat-containing protein	111.77	6.73	23.72
Cpa011	evm.model.supercontig_27.149	137	325	exon	evm.model.supercontig_27.149	Disease resistance protein (NB-ARC/LRR)	79.31	27.68	28.4
Cpa012	evm.model.supercontig_27.153	116	304	exon	evm.model.supercontig_27.153	Disease resistance protein	84.28	17.59	20.6
Cpa013	evm.model.supercontig_27.153	1070	1258	exon	evm.model.supercontig_27.153	Disease resistance protein	43.71	8.8	15.29
Cpa014	evm.model.supercontig_27.246	197	385	exon	evm.model.supercontig_27.246	Transcriptional adapter 2	105.22	9.31	18.72
Cpa015	evm.model.supercontig_27.246	537	788	exon	evm.model.supercontig_27.246	Transcriptional adapter 2	42.14	3.62	6.87
Cpa016	evm.model.supercontig_27.250	155	343	exon	evm.model.supercontig_27.250	Transcriptional adapter 2	10.73	1.03	2.5
Cpa017	evm.model.supercontig_46.171	2	190	exon	evm.model.supercontig_46.171	HXXXD-type acyl-transferase family protein	3.93	0.26	3.74
Cpa018	evm.model.supercontig_48.166	1572	1781	exon	evm.model.supercontig_48.166	zinc finger protein (HIT-type)	18.58	1.03	4.68
Cpa019	evm.model.supercontig_50.111	1015	1203	exon	evm.model.supercontig_50.111	hydroxyphenylpyruvate dioxygenase	0.79	1.03	12.8
Cpa020	evm.model.supercontig_541.5	11	199	exon	evm.model.supercontig_541.5	Pollen Ole e 1 like	0.52	7.24	1.87
Cpa021	evm.model.supercontig_6.98	375	563	exon	evm.model.supercontig_6.98	MYB domain protein	1.57	4.66	5.62
Cpa022	evm.model.supercontig_81.43	275	463	exon	evm.model.supercontig_81.43	Heat shock protein 20	1.31	2.07	9.05
Cpa023	evm.TU.contig_26951.4	8	196	exon	evm.TU.contig_26951.4	Helicase (ATP-dependent DNA helicase RecQ)	11.52	11.38	11.23
Cpa024	evm.TU.contig_47264.1	16	288	exon	evm.TU.contig_47264.1	NA	622.7	1.03	121.4
Cpa025	supercontig_1	4438291	4438500	intergenic	NA	NA	33.77	69.58	160.72
Cpa026	supercontig_1	4745420	4745608	exon	evm.TU.supercontig_1.364	Actin depolymerizing factor 4	0	0.26	3.43
Cpa027	supercontig_1	4918906	4919094	exon	evm.TU.supercontig_1.398	Heat shock protein 70	0.52	0	4.68
Cpa028	supercontig_104	264569	264757	exon	evm.TU.supercontig_104.37	Unknown protein	0.79	5.43	11.23
Cpa029	supercontig_106	699571	699801	exon	evm.TU.supercontig_106.61	zinc finger protein	0.26	0	11.23
Cpa030	supercontig_107	458906	459094	exon	evm.TU.supercontig_107.88	Calcium-dependent lipid-binding (CaLB domain) family protein	0.79	3.88	6.24
Cpa031	supercontig_11	659218	659406	exon	evm.TU.supercontig_11.62	Reticulon family protein	0.79	3.1	5.31
Cpa032	supercontig_114	174582	174770	exon	evm.TU.supercontig_114.9	Exo70 exocyst complex subunit	0	0	4.68
Cpa033	supercontig_114	633260	633448	intergenic	NA	NA	22.77	28.45	68.03
Cpa034	supercontig_115	831262	831492	exon and intron	evm.TU.supercontig_115.64	Calcium-transporting ATPase 1	6.81	11.9	25.59
Cpa035	supercontig_117	574551	574760	intergenic	NA	NA	6.54	13.71	26.53
Cpa036	supercontig_117	583848	584036	intergenic	NA	NA	8.9	14.49	28.4
Cpa037	supercontig_127	641866	642054	exon	evm.TU.supercontig_127.53	"UDP-glucuronate 5-epimerase, putative"	7.85	14.49	21.53
Cpa038	supercontig_129	172893	173123	exon	evm.TU.supercontig_129.22	hydroxyproline-rich glycoprotein family protein	3.4	2.33	19.35
Cpa039	supercontig_129	381082	381270	exon and intron	evm.TU.supercontig_129.42	Alpha tubulin subunit	3.93	2.85	9.99
Cpa040	supercontig_1291	13108	13296	exon	evm.TU.supercontig_1291.2	Domain of unknown function (DUF23)	1.83	4.91	11.23
Cpa041	supercontig_130	392370	392558	intergenic	NA	NA	16.23	14.49	15.6
Cpa042	supercontig_130	615873	616061	exon	evm.TU.supercontig_130.51	Unknown protein	0	1.29	14.67
Cpa043	supercontig_131	198353	198541	exon	evm.TU.supercontig_131.24	NA	0.79	1.29	8.74
Cpa044	supercontig_131	670136	670324	exon	evm.TU.supercontig_131.83	Ethylene-responsive transcription factor 6	0.52	3.36	3.43
Cpa045	supercontig_132	219051	219239	exon	evm.TU.supercontig_132.22	ENTH/ANTH/VHS superfamily protein	0.52	3.88	6.87
Cpa046	supercontig_135	562599	562787	exon	evm.TU.supercontig_135.37	Zinc transporter (iron transporter)	0.26	0	4.37
Cpa047	supercontig_1377	11251	11439	intergenic	NA	NA	1.05	2.07	2.81
Cpa048	supercontig_139	237186	237374	exon	evm.TU.supercontig_139.38	NA	0	3.36	9.67
Cpa049	supercontig_14	2204064	2204252	exon	evm.TU.supercontig_14.200	"Kinase, putative"	0.26	1.55	4.37
Cpa050	supercontig_14	2211484	2211672	exon and intron	evm.TU.supercontig_14.202	Mitochondrial substrate carrier family protein	11.26	10.35	13.42
Cpa051	supercontig_140	280520	280928	exon and intron	evm.TU.supercontig_140.12	Unknown protein	65.44	21.99	18.1
Cpa052	supercontig_140	283988	284176	intron	evm.TU.supercontig_140.13	NA	0.52	2.85	9.67
Cpa053	supercontig_146	170415	170624	exon	evm.TU.supercontig_146.36	S-adenosylmethionine synthase	0.79	3.62	5.31
Cpa054	supercontig_15	507023	507232	intergenic	NA	NA	98.94	141.24	92.69
Cpa055	supercontig_1540	10624	10812	intergenic	NA	NA	1.05	1.03	4.99
Cpa056	supercontig_157	228291	228479	exon	evm.TU.supercontig_157.30	Glycosyltransferase (UDP-)	0.52	2.85	4.37
Cpa057	supercontig_157	296217	296405	exon	evm.TU.supercontig_157.46	Adenosylhomocysteinase	2.62	6.47	15.6
Cpa058	supercontig_157	461367	461555	exon	evm.TU.supercontig_157.71	RING/U-box superfamily protein	0.79	1.55	8.74
Cpa059	supercontig_16	1732081	1732269	exon	evm.TU.supercontig_16.112	NA	2.09	10.61	8.11
Cpa060	supercontig_16	2461528	2461758	exon	evm.TU.supercontig_16.163	NA	0.79	3.88	6.87
Cpa061	supercontig_160	211969	212157	exon	evm.TU.supercontig_160.8	NA	0.79	0.78	4.68
Cpa062	supercontig_165	126807	127150	exon and intron	evm.TU.supercontig_165.20	NA	1285.71	1404.63	713.42
Cpa063	supercontig_1665	4864	5052	intergenic	NA	NA	1.83	2.59	9.67
Cpa064	supercontig_17	614810	614998	exon	evm.TU.supercontig_17.52	Auxin response factor 3	4.45	0	0.31
Cpa065	supercontig_170	127620	127808	exon	evm.TU.supercontig_170.23	Unknown protein	0.52	3.1	6.87
Cpa066	supercontig_1704	783	971	intergenic	NA	NA	0.26	1.81	4.99
Cpa067	supercontig_1704	7660	7848	intergenic	NA	NA	1.83	4.14	7.8
Cpa068	supercontig_176	1913	2101	intergenic	NA	NA	15.7	7.76	20.91
Cpa069	supercontig_18	330782	330991	exon	evm.TU.supercontig_18.43	Basic-leucine zipper (bZIP) transcription factor family protein	0.52	1.29	4.68
Cpa070	supercontig_18	747545	747817	intergenic	NA	TAS3a	1131.02	2328.89	371.69
Cpa071	supercontig_187	156829	157017	exon	evm.TU.supercontig_187.15	serine-rich protein-related	5.23	17.59	17.79
Cpa072	supercontig_187	157148	157462	exon	evm.TU.supercontig_187.15	serine-rich protein-related	21.99	115.37	172.58
Cpa073	supercontig_198	45486	45716	exon	evm.TU.supercontig_198.11	Polyubiquitin	14.4	32.59	95.5
Cpa074	supercontig_198	46158	46346	exon	evm.TU.supercontig_198.11	Polyubiquitin	14.13	31.04	102.67
Cpa075	supercontig_2	3023885	3024073	exon and intron	evm.TU.supercontig_2.228	PLANT CADMIUM RESISTANCE 2	0.79	5.69	8.11
Cpa076	supercontig_2	3758271	3758459	exon	evm.TU.supercontig_2.321	CBL-interacting protein kinase 16	0.52	4.14	4.99
Cpa077	supercontig_21	1598782	1598970	exon	evm.TU.supercontig_21.158	cysteine protease (C1-RELATED)	0	0.78	4.06
Cpa078	supercontig_211	34817	35005	exon	evm.TU.supercontig_211.8	Chlorophyll A-B binding protein	2.09	3.36	9.05
Cpa079	supercontig_23	2178002	2178253	intergenic	NA	NA	16.49	20.18	120.15
Cpa080	supercontig_235	213015	213203	exon	evm.TU.supercontig_235.20	Ubiqitin related (U-box domain-containing protein)	7.59	7.24	10.92
Cpa081	supercontig_2364	12640	12828	intergenic	NA	NA	0.26	0.52	3.43
Cpa082	supercontig_241	84314	84502	intergenic	NA	NA	2.09	3.88	8.74
Cpa083	supercontig_26	423065	423253	exon	evm.TU.supercontig_26.46	Unknown protein	1.31	6.73	0.62
Cpa084	supercontig_26	1265541	1265729	intergenic	NA	NA	26.44	17.07	18.1
Cpa085	supercontig_26	1759470	1759658	exon	evm.TU.supercontig_26.256	Plastocyanin	0.52	3.36	10.61
Cpa086	supercontig_27	1138914	1139123	exon	evm.TU.supercontig_27.99	Ribosomal protein L6	1.05	4.4	9.05
Cpa087	supercontig_27	1641569	1641757	exon	evm.TU.supercontig_27.147	Disease resistance protein (NB-ARC/LRR)	32.98	2.59	4.37
Cpa088	supercontig_27	1646651	1646881	exon	evm.TU.supercontig_27.148	Leucine-rich repeat-containing protein	57.32	4.91	9.67
Cpa089	supercontig_27	1655181	1655411	exon	evm.TU.supercontig_27.152	Disease resistance protein (NB-ARC/LRR)	23.3	1.03	7.8
Cpa090	supercontig_27	1714508	1714780	intergenic	NA	NA	30.62	34.4	20.29
Cpa091	supercontig_27	1721237	1721425	intergenic	NA	NA	3.4	5.69	14.04
Cpa092	supercontig_271	79683	79997	exon	evm.TU.supercontig_271.7	TRAF-like family protein	8.64	12.42	47.75
Cpa093	supercontig_3	577731	577919	exon	evm.TU.supercontig_3.77	Pectinesterase	0.52	3.62	11.86
Cpa094	supercontig_33	1803345	1803533	exon	evm.TU.supercontig_33.179	Calmodulin (EF hand-containing)	0.79	3.88	5.62
Cpa095	supercontig_3370	5498	5686	exon	evm.TU.supercontig_3370.1	Acetyl esterase	0	0	15.6
Cpa096	supercontig_36	879184	879372	exon	evm.TU.supercontig_36.112	Ethylene-responsive transcription factor 4	1.05	8.54	22.16
Cpa097	supercontig_36	925800	925988	exon	evm.TU.supercontig_36.117	F-box family protein	1.31	7.76	6.87
Cpa098	supercontig_37	427039	427227	exon	evm.TU.supercontig_37.56	Auxin response factor (SAUR-like)	0.52	1.55	4.37
Cpa099	supercontig_390	9807	9995	exon	evm.TU.supercontig_390.3	IMIDAZOLONEPROPIONASE AND HISTIDINE AMMONIA-LYASE like	0	0	1.56
Cpa100	supercontig_3917	380	568	intergenic	NA	NA	1.05	3.62	10.92
Cpa101	supercontig_4	1067102	1067290	exon	evm.TU.supercontig_4.36	Pectate lyase	1.05	2.33	6.55
Cpa102	supercontig_4089	659	889	intergenic	NA	NA	19.11	0.26	8.43
Cpa103	supercontig_43	355254	355442	exon	evm.TU.supercontig_43.37	Helicase (DEAD/DEAH box helicase)	11.52	9.57	9.99
Cpa104	supercontig_43	417812	418000	exon	evm.TU.supercontig_43.38	Helicase (ATP-dependent DNA helicase RecQ)	11.52	9.57	9.99
Cpa105	supercontig_43	460582	460770	exon	evm.TU.supercontig_43.40	Helicase (ATP-dependent DNA helicase RecQ)	10.99	9.83	9.67
Cpa106	supercontig_44	82199	82387	exon	evm.TU.supercontig_44.9	50S ribosomal protein L14	0	1.29	3.74
Cpa107	supercontig_46	103657	103845	exon	evm.TU.supercontig_46.9	F-box family protein (LRR domain-containing)	1.31	0.52	5.31
Cpa108	supercontig_46	189947	190135	exon	evm.TU.supercontig_46.20	Plastocyanin-like protein	0.52	0.26	3.12
Cpa109	supercontig_46	261965	262174	exon	evm.TU.supercontig_46.32	MYB domain protein	24.6	33.11	10.61
Cpa110	supercontig_48	542144	542332	exon and intron	evm.TU.supercontig_48.93	Rubber elongation factor protein (REF)	0.26	1.29	4.68
Cpa111	supercontig_4842	1382	1570	exon and intron	evm.TU.supercontig_4842.1	Annexin	0.52	1.03	6.24
Cpa112	supercontig_5	1622566	1622775	exon	evm.TU.supercontig_5.186	Unknown protein	1.57	13.97	86.45
Cpa113	supercontig_5	1716398	1716586	exon	evm.TU.supercontig_5.200	Methyltransferase domain protein	0.26	0.52	6.87
Cpa114	supercontig_51	1026435	1026623	intergenic	NA	NA	2.36	3.88	8.11
Cpa115	supercontig_51	1028806	1028994	intergenic	NA	NA	3.14	6.47	10.3
Cpa116	supercontig_51	1030048	1030236	intergenic	NA	NA	3.66	3.62	9.05
Cpa117	supercontig_51	1267052	1267240	exon	evm.TU.supercontig_51.130	Unknown protein	2.09	7.76	17.16
Cpa118	supercontig_52	666951	667181	exon	evm.TU.supercontig_52.74	Protein of unknown function (DUF581)	1.05	5.17	12.17
Cpa119	supercontig_52	1091713	1091901	exon	evm.TU.supercontig_52.127	Calcium-transporting ATPase 1	0	1.03	4.68
Cpa120	supercontig_52	1113300	1113488	intergenic	NA	NA	45.02	56.91	23.41
Cpa121	supercontig_53	1021905	1022093	exon and intron	evm.TU.supercontig_53.121	NA	0.26	0.52	4.37
Cpa122	supercontig_55	952893	953081	exon and intron	evm.TU.supercontig_55.150	Heat stress transcription factor	0	0.26	6.87
Cpa123	supercontig_57	1164198	1164386	exon and intron	evm.TU.supercontig_57.74	Dicer-like protein 1	8.38	6.98	1.87
Cpa124	supercontig_59	383169	383357	exon	evm.TU.supercontig_59.35	Ammonium transporter	0.52	1.29	6.87
Cpa125	supercontig_59	1242457	1242645	intron	evm.TU.supercontig_59.133	Pectinesterase	12.56	34.66	78.96
Cpa126	supercontig_6	351902	352090	exon	evm.TU.supercontig_6.53	Subtilisin-like serine protease	2.88	6.21	8.74
Cpa127	supercontig_6	1395519	1395707	exon	evm.TU.supercontig_6.170	ATP-dependent zinc metalloprotease FtsH 2	0	0.52	3.74
Cpa128	supercontig_62	1021252	1021503	exon and intron	evm.TU.supercontig_62.164	Methyltransferase (FtsJ-like)	265.68	45.53	410.39
Cpa129	supercontig_62	1031871	1032419	exon and intron	evm.TU.supercontig_62.165	"Methyltransferase (spb1-like, AdoMet-dependent, for rRNA)"	2004.74	282.22	2530.03
Cpa130	supercontig_62	1033525	1033819	exon	evm.TU.supercontig_62.166	"Methyltransferase (spb1-like, AdoMet-dependent, for rRNA)"	80.1	21.21	107.36
Cpa131	supercontig_62	1037670	1037964	exon	evm.TU.supercontig_62.167	Methyltransferase (FtsJ-like)	80.1	21.21	107.36
Cpa132	supercontig_64	136124	136312	exon	evm.TU.supercontig_64.17	Cytochrome (b6f complex subunit)	0.26	0.26	3.74
Cpa133	supercontig_64	284431	284619	exon	evm.TU.supercontig_64.43	Unknown protein	2.62	5.69	8.74
Cpa134	supercontig_64	702124	702312	exon and intron	evm.TU.supercontig_64.100	"Protein disulfide isomerase, putative"	0.26	1.29	4.37
Cpa135	supercontig_67	480968	481156	intergenic	NA	NA	5.23	7.76	7.49
Cpa136	supercontig_67	1068547	1068882	exon	evm.TU.supercontig_67.71	S-adenosylmethionine synthase	3.93	10.61	20.91
Cpa137	supercontig_67	1118524	1118712	exon	evm.TU.supercontig_67.73	Chlorophyll A-B binding protein	4.45	3.88	10.3
Cpa138	supercontig_67	1145314	1145502	exon	evm.TU.supercontig_67.74	Chlorophyll A-B binding protein	4.45	3.88	10.3
Cpa139	supercontig_70	604246	604455	exon	evm.TU.supercontig_70.88	AUXIN SIGNALING F-BOX 2	102.08	260.75	25.59
Cpa140	supercontig_70	604468	604656	exon	evm.TU.supercontig_70.88	AUXIN SIGNALING F-BOX 2	70.93	262.04	20.29
Cpa141	supercontig_71	1093025	1093234	exon	evm.TU.supercontig_71.72	basic helix-loop-helix (bHLH) protein	1.31	4.66	7.8
Cpa142	supercontig_75	181697	181927	intergenic	NA	NA	0	28.71	0
Cpa143	supercontig_77	1110811	1111253	exon and intron	evm.TU.supercontig_77.90	Cc-nbs-lrr resistance protein	804.88	963.58	700.62
Cpa144	supercontig_77	1114009	1114471	exon	evm.TU.supercontig_77.91	Cc-nbs-lrr resistance protein	852.26	919.6	530.54
Cpa145	supercontig_8	1863126	1863314	exon	evm.TU.supercontig_8.262	Protease inhibitor/seed storage/LTP family	0.52	2.07	6.24
Cpa146	supercontig_80	383047	383235	exon	evm.TU.supercontig_80.46	Acidic endochitinase	0	1.55	4.37
Cpa147	supercontig_84	476072	476260	intergenic	NA	NA	0.79	2.07	9.67
Cpa148	supercontig_84	930837	931025	exon	evm.TU.supercontig_84.127	Ribosomal RNA large subunit methyltransferase E	40.31	14.23	25.9
Cpa149	supercontig_9	16994	17287	intergenic	NA	TAS3	5626.31	8187.96	1795.08
Cpa150	supercontig_9	618680	618868	intergenic	NA	NA	3.66	7.5	11.86
Cpa151	supercontig_9	1076348	1076578	exon	evm.TU.supercontig_9.171	Transport inhibitor response1 (TIR1/Auxin F-box)	7.07	9.83	1.56
Cpa152	supercontig_9	1672698	1672949	exon	evm.TU.supercontig_9.251	NA	5.5	14.23	66.16
Cpa153	supercontig_9	2633325	2633660	exon	evm.TU.supercontig_9.374	Calcineurin-like metallo-phosphoesterase superfamily protein	7.59	13.19	53.68
Cpa154	supercontig_92	760362	760592	exon	evm.TU.supercontig_92.94	Aquaporin	3.4	6.73	10.3
Cpa155	supercontig_92	905539	905727	exon	evm.TU.supercontig_92.120	IMIDAZOLONEPROPIONASE AND HISTIDINE AMMONIA-LYASE like	0	0	1.56
Cpa156	supercontig_94	483840	484028	intron	evm.TU.supercontig_94.26	NA	0.79	3.36	1.87
Cpa157	supercontig_94	756694	756903	intergenic	NA	NA	260.44	320.76	410.07
Cpa158	supercontig_95	1357366	1357575	exon	evm.TU.supercontig_95.79	glutamine dumper 3	12.04	10.09	19.35
Cpa159	supercontig_96	551546	551734	intergenic	NA	NA	0.26	2.85	2.18
Cpa160	supercontig_99	231515	231703	intergenic	NA	NA	2.36	4.66	8.43
Cpa161	supercontig_996	5824	6012	exon	evm.TU.supercontig_996.1	AP2 domain transcription factor	0.52	4.14	5.62

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Control	Phosphate starvation	Sulfate starvation
Cre001	chromosome_1	3287	3475	intergenic	NA	NA	4.26	6.07	5.11
Cre002	chromosome_1	1523832	1524020	exon	Cre01.g007901	NA	0.3	1.01	0.07
Cre003	chromosome_1	2125323	2125700	exon and intron	Cre01.g011500	26s proteasome non-ATPase regulatory subunit	1918.03	2604.55	2927.44
Cre004	chromosome_1	3167011	3167304	intergenic	NA	NA	11.8	71.48	17.59
Cre005	chromosome_1	4254219	4254407	intron	Cre01.g028500	Unknown protein	17.74	196.15	102.58
Cre006	chromosome_1	4539521	4539780	exon	g701	Unknown protein	2.89	6.87	5.04
Cre007	chromosome_1	5066513	5066701	exon	g791	Unknown protein	307.17	593.73	812.05
Cre008	chromosome_1	5450037	5450330	exon and intron	Cre01.g038350	Unknown protein	91.81	196.8	84.99
Cre009	chromosome_1	6454366	6454765	exon	g1029	Transposon protein (Ty1-BL Gag-Pol polyprotein)	3101.82	41.92	33.53
Cre010	chromosome_1	7070505	7070693	exon	Cre01.g051050	calcium-dependent protein kinase 23	128.35	92.87	58.41
Cre011	chromosome_1	7637259	7637447	exon	g1219	NA	62.42	362.6	64.82
Cre012	chromosome_1	7853996	7854184	exon and intron	g1254	NA	8.91	30.28	14.25
Cre013	chromosome_1	7858199	7858408	intron	g1255	Unknown protein	8.53	32.67	12.41
Cre014	chromosome_1	7858523	7858774	exon and intron	g1255	Unknown protein	19.26	61.72	25.56
Cre015	chromosome_1	7863161	7863370	exon and intron	g1256	Unknown protein	12.48	46.62	17.38
Cre016	chromosome_10	1118582	1118812	intron	Cre10.g425600	Phosphatase YqaB	0.76	1.3	1.7
Cre017	chromosome_10	4432234	4432422	intron	Cre10.g451600	C-type lectin 16	12.03	52.83	26.72
Cre018	chromosome_10	5871781	5871969	intron	Cre10.g461850	Unknown protein	4.19	12.58	6.95
Cre019	chromosome_10	6282381	6282569	exon	Cre10.g465000	Unknown protein	49.79	103.64	38.03
Cre020	chromosome_11	65261	65596	intergenic	NA	NA	145.25	282.52	159.83
Cre021	chromosome_11	427200	427388	exon	g11515	Protein kinase family protein	1308.18	998.32	293.77
Cre022	chromosome_11	442690	442920	exon	g11518	Serine/threonine protein kinase	1229.31	939.93	275.5
Cre023	chromosome_11	448841	449071	exon	g11519	Protein kinase family protein	1229.31	939.93	275.5
Cre024	chromosome_11	616806	616994	intergenic	NA	NA	977.4	1646.91	1314.11
Cre025	chromosome_11	1337272	1337586	exon	g11644	MaoC-like dehydratase	92834.99	48113.43	18543.3
Cre026	chromosome_11	1713395	1713583	exon	g11713	Unknown protein	29.08	95.19	25.97
Cre027	chromosome_11	1824583	1824771	exon	g11733	"Crinkler (CRN) family protein, putative"	69.05	124.31	74.84
Cre028	chromosome_11	1877472	1877702	exon	g11743	NA	2.13	7.01	3.68
Cre029	chromosome_11	1943047	1943235	exon	g11752	Unknown protein	2.51	4.84	8.59
Cre030	chromosome_11	2205601	2205915	intergenic	NA	NA	92842.68	48117.48	18545.01
Cre031	chromosome_11	3409350	3409580	exon	Cre11.g480700	NA	5.33	7.01	5.93
Cre032	chromosome_11	3410476	3410696	intergenic	NA	NA	4.42	5.35	4.57
Cre033	chromosome_11	3649076	3649264	exon and intron	Cre11.g482400	Unknown protein	16.37	52.54	27.2
Cre034	chromosome_12	394192	394380	exon	g12069	Unknown protein	23.37	31.15	24.61
Cre035	chromosome_12	1303671	1303859	exon	g12208	Transposon protein (Tcr1 ORF2)	1.29	2.24	1.3
Cre036	chromosome_12	2415399	2415766	exon	Cre12.g507100	Unknown protein	25.81	63.6	20.45
Cre037	chromosome_12	2444819	2445007	exon	g12428	NA	85.34	168.76	86.49
Cre038	chromosome_12	2927627	2927815	exon	g12540	Unknown protein	0.61	1.66	1.23
Cre039	chromosome_12	3262809	3262997	intergenic	NA	NA	2.59	4.41	3.54
Cre040	chromosome_12	3684447	3684635	intron	Cre12.g514450	"Splicing factor 3B subunit, putative"	0	0.87	0.34
Cre041	chromosome_12	4071854	4072042	intron	Cre12.g517681	Transposase-like protein	5.63	6.94	2.73
Cre042	chromosome_12	4109110	4109403	exon and intron	g12772	Unknown protein	117.46	202.44	136.66
Cre043	chromosome_12	4688356	4688544	exon	g12888	Unknown protein	2.59	10.7	2.86
Cre044	chromosome_12	4826808	4826996	exon and intron	Cre12.g524650	NAD-dependent protein deacetylase	28.32	40.26	34.49
Cre045	chromosome_12	6158451	6158681	exon and intron	Cre12.g536200	NA	1011.96	1227.51	452.85
Cre046	chromosome_12	6166846	6167117	exon and intron	g13188	NA	5721.29	7306.64	1982.01
Cre047	chromosome_12	6177020	6177250	exon and intron	Cre12.g536350	NA	1011.96	1227.51	452.85
Cre048	chromosome_12	7020126	7020356	exon	Cre12.g559700	Unknown protein	13.02	17.06	9.27
Cre049	chromosome_12	7027510	7027761	exon	g13327	NA	131.93	150.19	57.8
Cre050	chromosome_12	7065773	7066066	exon	Cre12.g559550	Unknown protein	179.81	180.9	73.2
Cre051	chromosome_12	8061339	8061527	exon	Cre12.g551700	Unknown protein	0.08	0	0.41
Cre052	chromosome_12	8399850	8400038	exon	Cre12.g548800	NA	0.91	1.01	1.23
Cre053	chromosome_12	9024056	9024244	intergenic	NA	NA	4.95	24.72	21.4
Cre054	chromosome_12	9352023	9352211	intron	g13764	Hydrolase (Alpha/beta)	2.66	6.36	4.36
Cre055	chromosome_12	9425661	9425849	exon	g13778	Unknown protein	43.47	188.56	171.01
Cre056	chromosome_12	9425881	9426069	exon	g13778	Unknown protein	57.93	214.29	203.66
Cre057	chromosome_13	552453	552683	exon	g13911	Unknown protein	466.51	583.9	281.29
Cre058	chromosome_13	791519	791854	exon	Cre13.g567000	Unknown protein	92842.91	48117.84	18545.21
Cre059	chromosome_13	2012641	2012850	exon and intron	g14174	Chlorophyll A-B binding protein	53.29	62.01	30.33
Cre060	chromosome_13	2013018	2013206	exon and intron	g14174	Chlorophyll A-B binding protein	20.4	24.72	13.56
Cre061	chromosome_13	2301442	2301630	exon	Cre13.g579050	Anaphase promoting complex subunit 1	1268.74	2232.91	1319.02
Cre062	chromosome_13	2574019	2574333	exon and intron	g14270	Unknown protein	237.67	410.66	243.67
Cre063	chromosome_13	2605469	2605678	intergenic	NA	NA	219.86	546.97	291.65
Cre064	chromosome_13	3482466	3482654	intron	Cre13.g587700	Retinol dehydrogenase 13	22.84	33.03	41.1
Cre065	chromosome_13	3511668	3511961	intergenic	NA	NA	27.86	83.91	18.61
Cre066	chromosome_13	3512148	3512336	intergenic	NA	NA	1.37	4.99	1.02
Cre067	chromosome_13	4817713	4818048	exon	Cre13.g605250	Unknown protein	117.77	77.26	30.74
Cre068	chromosome_13	4818767	4819062	intergenic	NA	NA	104.37	73.14	36.12
Cre069	chromosome_13	4823196	4823615	exon	g14599	Unknown protein	13077.49	19251.85	15000.17
Cre070	chromosome_13	4846106	4846370	intron	g14603	Unknown protein	123.71	73.07	33.33
Cre071	chromosome_13	4846475	4846789	exon and intron	g14603	Unknown protein	157.43	110.07	49.35
Cre072	chromosome_14	871747	871935	exon and intron	g14782	NA	1.29	3.9	1.3
Cre073	chromosome_14	1123433	1123642	exon	g14824	Unknown protein	0	0.43	41.03
Cre074	chromosome_14	1191432	1191620	intron	Cre14.g615950	Elongation factor EF-3	1018.36	1069.88	588.28
Cre075	chromosome_14	1191723	1192016	intron	Cre14.g615950	Elongation factor EF-3	1499.1	1705.96	792.83
Cre076	chromosome_14	1827271	1827459	exon and intron	g14947	Unknown protein	1.14	9.83	2.39
Cre077	chromosome_14	1950115	1950336	intergenic	NA	NA	4634.11	4372.38	3221.76
Cre078	chromosome_14	2430629	2430817	exon	Cre14.g624700	Unknown protein	23.9	50.3	84.52
Cre079	chromosome_14	2488790	2488978	exon	Cre14.g625100	Unknown protein	28.85	68.88	96.17
Cre080	chromosome_14	3218766	3218954	intron	Cre14.g629200	Flagellar associated protein	839.53	1190.79	691.61
Cre081	chromosome_14	3281716	3281904	intron	Cre14.g629650	High-affinity nickel-transport family protein	4.26	6.07	5.11
Cre082	chromosome_14	3476284	3476514	exon and intron	g15193	Unknown protein	31.21	49.07	18.54
Cre083	chromosome_14	4145154	4145342	exon	g15293	Unknown protein	4.34	6.14	5.45
Cre084	chromosome_14	4151231	4151419	intergenic	NA	NA	1.37	3.18	4.77
Cre085	chromosome_15	11986	12174	exon and intron	g15297	Unknown protein	1.45	0	0
Cre086	chromosome_15	25013	25201	exon and intron	Cre15.g634550	Unknown protein	1.45	0	0
Cre087	chromosome_15	110228	110437	exon	g15310	Unknown protein	43.7	78.63	49.89
Cre088	chromosome_15	113455	113742	exon and intron	g15311	NA	4539.03	4272.64	3806.56
Cre089	chromosome_15	858632	858820	exon	g15416	Kinase-like protein	0.08	0.36	1.23
Cre090	chromosome_15	1212675	1212863	exon	g15463	NA	17.59	15.61	7.57
Cre091	chromosome_15	1582938	1583126	intergenic	NA	NA	0.08	7.44	17.31
Cre092	chromosome_15	1914856	1915044	intergenic	NA	NA	3.43	10.05	11.93
Cre093	chromosome_16	859014	859202	exon and intron	g15682	DNA polymerase eta/iota	333.06	695.5	455.71
Cre094	chromosome_16	1502666	1502854	exon	Cre16.g653050	Methyltransferase (tRNA/rRNA)	10.96	202.3	29.17
Cre095	chromosome_16	2401750	2402001	exon and intron	Cre16.g660331	Unknown protein	88.31	66.71	34.97
Cre096	chromosome_16	2402052	2402240	exon	Cre16.g660331	Unknown protein	99.5	82.18	40.21
Cre097	chromosome_16	2403428	2403637	exon	Cre16.g660350	Coiled-coil domain-containing protein MTMR15	61.59	133.06	39.46
Cre098	chromosome_16	3002092	3002322	exon	Cre16.g664600	NADH:ubiquinone oxidoreductase B16.6 subunit	0	43.15	49.35
Cre099	chromosome_16	3391446	3391634	intergenic	NA	NA	2745.39	2047.53	1478.58
Cre100	chromosome_16	3955552	3955740	intergenic	NA	NA	0.3	1.45	1.23
Cre101	chromosome_16	4056073	4056387	intron	Cre16.g670000	Unknown protein	396.17	677.86	312.24
Cre102	chromosome_16	4147611	4147904	exon and intron	g16253	Unknown protein	0.91	3.04	3.89
Cre103	chromosome_16	4148101	4148289	exon	g16253	Unknown protein	6.01	24	25.97
Cre104	chromosome_16	4227183	4227371	exon and intron	Cre16.g668500	Unknown protein	0.53	1.52	0.89
Cre105	chromosome_16	4565821	4566093	exon and intron	Cre16.g688200	Unknown protein	54.58	53.56	56.23
Cre106	chromosome_16	6439957	6440356	exon	Cre16.g673450	Transposon protein (Ty1-BL Gag-Pol polyprotein)	3101.82	41.92	33.53
Cre107	chromosome_16	7434890	7435163	exon and intron	g16830	Unknown protein	42.17	35.63	46.89
Cre108	chromosome_17	1131184	1131372	exon and intron	Cre17.g704250	Unknown protein	0.46	0.94	3.75
Cre109	chromosome_17	2541077	2541370	intron	Cre17.g716500	Serine/threonine protein kinase 11	22.84	95.69	52.14
Cre110	chromosome_17	2549101	2549289	intergenic	NA	NA	14.08	27.75	12.06
Cre111	chromosome_17	2561547	2561735	exon and intron	g17349	NA	2.13	6.36	3.89
Cre112	chromosome_17	3465467	3465667	exon and intron	g17530	Unknown protein	44.08	107.11	23.04
Cre113	chromosome_17	4687567	4687755	exon	g17727	methyl-CPG-binding domain 9 (containing PHD-finger and Reverse transcriptase domains)	2.44	4.26	1.16
Cre114	chromosome_17	4982001	4982189	exon	g17772	NA	1.29	2.24	1.3
Cre115	chromosome_17	4987504	4987692	exon and intron	g17773	Unknown protein	2.21	2.53	2.18
Cre116	chromosome_17	5031294	5031482	exon and intron	g17778	Unknown protein	85.42	66.49	46.14
Cre117	chromosome_17	5033749	5033937	exon and intron	g17778	Unknown protein	2.21	2.53	2.18
Cre118	chromosome_17	5152767	5152955	exon	g17790	Flagellar associated protein	4539.86	4310.51	2645.61
Cre119	chromosome_17	5511154	5511342	intergenic	NA	NA	0	0.07	1.98
Cre120	chromosome_17	5535992	5536180	intergenic	NA	NA	0	0.07	1.98
Cre121	chromosome_17	6146276	6146611	exon and intron	g17937	Unknown protein	101.93	306.15	96.58
Cre122	chromosome_17	6146713	6147090	exon and intron	g17937	Unknown protein	71.79	219.35	73.61
Cre123	chromosome_17	6749207	6749395	intergenic	NA	NA	0	0	4.98
Cre124	chromosome_17	7005132	7005320	exon	g18045	Unknown protein	422.36	361.52	300.04
Cre125	chromosome_17	7005460	7005648	intron	g18045	Unknown protein	639.32	629.87	432.33
Cre126	chromosome_2	2019241	2019429	intergenic	NA	NA	12.71	59.84	9.68
Cre127	chromosome_2	2217835	2218023	exon	Cre02.g089850	FACT complex subunit POB3	80.24	70.61	41.92
Cre128	chromosome_2	3047369	3047557	intron	g1821	Unknown protein	52	89.19	28.56
Cre129	chromosome_2	3974356	3974544	exon	g1965	Unknown protein	6.93	24.21	7.36
Cre130	chromosome_2	5502566	5502775	intron	Cre02.g108250	UPF0061 protein YdiU	5.63	18.07	7.09
Cre131	chromosome_2	6886091	6886279	intron	Cre02.g119700	Beta-galactosidase	0.91	0.87	1.5
Cre132	chromosome_2	6982426	6982614	exon	g2502	Transposon protein (Tcr1 ORF2)	1.29	2.24	1.3
Cre133	chromosome_2	8349184	8349372	exon	g2712	NA	20.71	39.17	58.07
Cre134	chromosome_2	8385704	8385934	exon and intron	g2718	Unknown protein	27.48	50.59	20.24
Cre135	chromosome_2	8387452	8387704	exon	g2719	Unknown protein	8.45	23.92	4.36
Cre136	chromosome_2	9101108	9101296	intron	g2826	Unknown protein	48.42	755.41	311.22
Cre137	chromosome_2	9161424	9161696	exon	g2835	Unknown protein	9.21	49.29	14.31
Cre138	chromosome_2	9173286	9173474	exon	g2836	Unknown protein	23.9	51.03	63.32
Cre139	chromosome_2	9207648	9207899	intergenic	NA	NA	327.12	69.96	96.92
Cre140	chromosome_3	890820	891071	exon	g2997	Unknown protein	206.99	24.36	17.31
Cre141	chromosome_3	891402	891653	intron	g2997	Unknown protein	195.27	23.42	15.68
Cre142	chromosome_3	967036	967224	intergenic	NA	NA	112.9	190.95	71.36
Cre143	chromosome_3	1999884	2000072	exon and intron	g3182	"Crinkler (CRN) family protein, putative"	365.26	541.33	423.34
Cre144	chromosome_3	3097540	3097770	exon	Cre03.g164750	Unknown protein	32.13	124.02	51.26
Cre145	chromosome_3	3108913	3109101	intergenic	NA	NA	18.8	32.96	25.15
Cre146	chromosome_3	4522869	4523207	exon and intron	g3646	Unknown protein	1052.16	1438.69	793.38
Cre147	chromosome_3	5326138	5326368	exon and intron	g3812	Transposon protein (Ty1-BL Gag-Pol polyprotein)	2944.69	39.53	31.15
Cre148	chromosome_3	5330177	5330365	exon and intron	g3812	Transposon protein (Ty1-BL Gag-Pol polyprotein)	1350.05	21.39	15.06
Cre149	chromosome_3	5596152	5596551	exon	Cre03.g186800	Transposon protein (Ty1-BL Gag-Pol polyprotein)	3101.82	41.92	33.53
Cre150	chromosome_3	6116416	6116646	intergenic	NA	NA	1.29	6.14	2.73
Cre151	chromosome_3	6116994	6117182	intergenic	NA	NA	4.64	21.61	8.25
Cre152	chromosome_3	6425271	6425522	exon	g4027	NA	86.56	80.59	53.3
Cre153	chromosome_3	6431752	6431961	intergenic	NA	NA	170.6	173.02	108.58
Cre154	chromosome_3	6432063	6432272	intergenic	NA	NA	109.55	99.02	92.83
Cre155	chromosome_3	6442083	6442271	intergenic	NA	NA	293.32	296.76	233.04
Cre156	chromosome_3	6442432	6442746	intergenic	NA	NA	196.56	205.11	121.53
Cre157	chromosome_3	6839157	6839345	exon and intron	Cre03.g198250	Low-CO2-inducible protein	978.39	1622.85	2987.43
Cre158	chromosome_3	7375968	7376241	exon and intron	g4186	Unknown protein	83.36	311.86	177.28
Cre159	chromosome_3	7376323	7376595	intron	g4186	Unknown protein	133.38	427.43	315.99
Cre160	chromosome_3	8399619	8399807	intergenic	NA	NA	815.71	101.69	50.17
Cre161	chromosome_3	8592901	8593089	exon	g4390	DNA polymerase eta/iota	81.99	523.48	135.09
Cre162	chromosome_3	8595392	8595688	exon	g4392	NA	100.26	723.47	235.97
Cre163	chromosome_3	8967142	8967330	exon	g4450	Unknown protein	0.69	43.51	33.81
Cre164	chromosome_4	259107	259295	intergenic	NA	NA	37.91	177.36	41.37
Cre165	chromosome_4	585002	585303	intron	g4569	Kelch repeat-containing protein	155.07	93.74	44.44
Cre166	chromosome_4	1804345	1804533	intron	g4741	Glycosyltransferase (Exostosin-like)	10.73	44.38	7.77
Cre167	chromosome_4	1974186	1974458	intron	g4763	Unknown protein	51.61	37.44	112.87
Cre168	chromosome_4	2304426	2304719	exon	g4809	Unknown protein	150.12	848.5	395.6
Cre169	chromosome_4	2304764	2305057	exon	g4809	Unknown protein	166.49	992.25	470.5
Cre170	chromosome_4	3390059	3390394	intron	Cre04.g227500	Lysyl oxidase like protein 4	3350.98	1056.65	376.1
Cre171	chromosome_4	3690364	3690573	intergenic	NA	NA	721.31	478.96	483.73
Cre172	chromosome_5	45396	45584	intergenic	NA	NA	0.08	62.08	1.43
Cre173	chromosome_5	488375	488563	exon and intron	g5126	Unknown protein	2.66	6.36	4.36
Cre174	chromosome_5	500454	500642	exon and intron	g5128	Unknown protein	4.19	12.58	6.95
Cre175	chromosome_5	554805	554993	intergenic	NA	NA	2.66	6.36	4.36
Cre176	chromosome_5	685773	685961	intergenic	NA	NA	0.84	8.46	7.57
Cre177	chromosome_5	686856	687065	intergenic	NA	NA	0.53	7.37	9.68
Cre178	chromosome_5	691755	691964	intergenic	NA	NA	0.61	7.59	7.29
Cre179	chromosome_5	910395	910710	intron	Cre05.g247300	Tetratricopeptide repeat containing protein	17727.89	8152.32	6955.66
Cre180	chromosome_5	935251	935502	intron	Cre05.g247100	Spore coat protein CotH (Precursor)	4286.82	3576.42	1756.06
Cre181	chromosome_5	1813791	1814131	exon	g5312	Unknown protein	19.49	49.65	50.78
Cre182	chromosome_5	2001848	2002036	exon	g5343	MaoC-like dehydratase	15.23	44.23	97.47
Cre183	chromosome_5	2294486	2294791	exon	g5388	Unknown protein	19059.28	25349.49	27217.95
Cre184	chromosome_5	2917957	2918145	exon	Cre05.g238140	Unknown protein	4.57	1.52	3.34
Cre185	chromosome_5	2985442	2985798	exon	g5493	Unknown protein	199.23	569.67	394.03
Cre186	chromosome_5	3274047	3274235	exon and intron	g5541	NA	0.61	1.01	0.95
Cre187	chromosome_5	3275829	3276017	exon	g5541	NA	1.29	1.37	1.16
Cre188	chromosome_5	3470438	3470626	exon and intron	Cre05.g241550	Unknown protein	2.28	4.91	1.64
Cre189	chromosome_6	1209	1397	intergenic	NA	NA	0	0.36	0.75
Cre190	chromosome_6	797927	798115	exon	g5714	NA	1.67	2.17	1.84
Cre191	chromosome_6	806999	807187	exon	g5715	NA	1.67	1.95	1.3
Cre192	chromosome_6	1626589	1626777	exon	g5860	NA	0.38	1.52	1.7
Cre193	chromosome_6	2199211	2199399	exon	g5972	Unknown protein	4.95	10.05	3.14
Cre194	chromosome_6	3385707	3385895	exon	Cre06.g277850	Unknown protein	21.16	164.21	32.92
Cre195	chromosome_6	3398616	3398804	exon	g6229	Unknown protein	21.16	164.21	32.92
Cre196	chromosome_6	3588376	3588564	intron	g6267	BPI/LBP/CETP N-terminal domain protein	2.97	15.9	11.11
Cre197	chromosome_6	3655237	3655425	exon and intron	g6278	NA	0.23	0.72	5.25
Cre198	chromosome_6	3661121	3661309	intergenic	NA	NA	0.23	0.72	5.25
Cre199	chromosome_6	4031334	4031543	exon	g6348	NA	272.46	205.33	124.8
Cre200	chromosome_6	4089371	4089559	exon	g6359	Unknown protein	3.43	2.39	1.57
Cre201	chromosome_6	4090326	4090514	exon	g6360	NA	13.32	10.12	10.77
Cre202	chromosome_6	6775962	6776150	exon	g6823	Unknown protein	881.79	1495.64	3102.41
Cre203	chromosome_6	6848012	6848452	exon	Cre06.g295300	Unknown protein	97.67	636.66	156.9
Cre204	chromosome_6	6848802	6849053	exon	Cre06.g295300	Unknown protein	57.02	423.74	91.61
Cre205	chromosome_6	6854041	6854250	exon	Cre06.g295350	Unknown protein	284.72	369.1	159.7
Cre206	chromosome_6	8059730	8059918	intron	g7048	Unknown protein	44.23	149.75	41.24
Cre207	chromosome_6	8059990	8060178	exon and intron	g7048	Unknown protein	13.09	41.7	12.47
Cre208	chromosome_6	8612425	8612613	intergenic	NA	NA	30.53	38.31	33.06
Cre209	chromosome_7	74601	74992	intergenic	NA	NA	40.35	102.85	74.77
Cre210	chromosome_7	76579	76907	intergenic	NA	NA	33.34	89.91	66.66
Cre211	chromosome_7	2591403	2591591	exon	Cre07.g329950	Unknown protein	75.37	195.29	64.68
Cre212	chromosome_7	3857496	3857786	exon	Cre07.g338750	Unknown protein	282.66	762.28	297.38
Cre213	chromosome_7	3864638	3864889	exon	Cre07.g338850	Unknown protein	310.07	611.73	263.16
Cre214	chromosome_7	3871180	3871368	intron	Cre07.g338900	CWF19-like protein 1	24.82	36.79	40.96
Cre215	chromosome_7	4013449	4013721	exon	g7909	Sporulation protein cse15	20.17	65.19	22.49
Cre216	chromosome_7	4425405	4425593	exon	Cre07.g343050	Unknown protein	0	0	1.3
Cre217	chromosome_7	5068846	5069034	intergenic	NA	NA	5.71	20.81	7.84
Cre218	chromosome_7	5629387	5629575	exon	Cre07.g352100	Unknown protein	0.08	0.72	0.14
Cre219	chromosome_7	5707639	5707827	intergenic	NA	NA	5.56	10.34	428.38
Cre220	chromosome_7	5810916	5811104	exon	g8218	Unknown protein	2.59	11.42	3.54
Cre221	chromosome_8	313028	313237	intergenic	NA	NA	6.24	53.12	16.02
Cre222	chromosome_8	313626	313856	intergenic	NA	NA	2.44	27.32	8.25
Cre223	chromosome_8	347786	348016	exon	g8386	Guanylate cyclase	574.46	1114.69	2408.07
Cre224	chromosome_8	437288	437518	exon	g8397	Unknown protein	1700.92	2091.62	2346.73
Cre225	chromosome_8	533474	533662	exon	g8413	NA	29.77	348.22	38.58
Cre226	chromosome_8	947187	947375	intergenic	NA	NA	0.15	1.45	1.57
Cre227	chromosome_8	1713566	1713754	intergenic	NA	NA	0.38	1.59	1.7
Cre228	chromosome_8	1981971	1982159	intergenic	NA	NA	2.97	31.51	3.82
Cre229	chromosome_8	1982930	1983118	intergenic	NA	NA	6.85	72.56	10.97
Cre230	chromosome_8	2197449	2197721	intron	g8661	Unknown protein	624.25	998.4	512.83
Cre231	chromosome_8	2436564	2436800	intron	g8702	Unknown protein	110.31	149.9	141.09
Cre232	chromosome_8	3160713	3160901	exon and intron	g8794	Unknown protein	18.8	7.59	3.75
Cre233	chromosome_8	3160939	3161148	exon	g8794	Unknown protein	57.7	122.87	37.28
Cre234	chromosome_8	3765020	3765331	intergenic	NA	NA	0.23	2.46	2.04
Cre235	chromosome_8	4414761	4414949	intergenic	NA	NA	4.64	21.61	8.25
Cre236	chromosome_8	4415297	4415527	intergenic	NA	NA	1.98	7.37	3.2
Cre237	chromosome_8	5027637	5027825	intergenic	NA	NA	4.34	6.14	5.45
Cre238	chromosome_9	613326	613514	intron	Cre09.g403500	Ankyrin repeat-containing protein	2.51	1.01	1.64
Cre239	chromosome_9	893973	894455	intron	Cre09.g401350	unknown protein	1063.81	1032.8	649.7
Cre240	chromosome_9	1228708	1228896	exon	Cre09.g399650	Unknown protein	28.47	106.32	28.15
Cre241	chromosome_9	1360062	1360292	intergenic	NA	NA	2.21	2.82	2.32
Cre242	chromosome_9	1866819	1867007	intron	Cre09.g395600	GTPase obg	5.25	8.67	8.59
Cre243	chromosome_9	1966604	1966813	intron	Cre09.g394850	LrgB-like protein	5.1	9.83	3.95
Cre244	chromosome_9	3114324	3114512	intergenic	NA	NA	2.28	2.53	2.18
Cre245	chromosome_9	3114577	3114786	intergenic	NA	NA	15	16.48	7.29
Cre246	chromosome_9	3119848	3120036	exon	g9570	NA	1.29	1.37	1.16
Cre247	chromosome_9	3783308	3783559	exon	g9695	Unknown protein	29.92	116.14	36.4
Cre248	chromosome_9	4013142	4013330	intergenic	NA	NA	0.15	0.94	0.48
Cre249	chromosome_9	4666681	4667016	intergenic	NA	NA	157.96	311.43	176.06
Cre250	chromosome_9	4853431	4853640	intron	g9868	Protein kinase-like	12.03	26.02	5.18
Cre251	chromosome_9	5098348	5098557	exon	g9898	Unknown protein	19.64	31.58	12.88
Cre252	chromosome_9	5542011	5542199	intergenic	NA	NA	10.51	11.2	3
Cre253	chromosome_9	5592581	5592811	intergenic	NA	NA	8.75	100.39	10.56
Cre254	chromosome_9	6115558	6115809	intergenic	NA	NA	2.44	26.96	30.81
Cre255	chromosome_9	6117979	6118388	intergenic	NA	NA	7.61	74.73	90.79
Cre256	chromosome_9	6518981	6519169	intron	g10105	Transcriptional activator (TenA family)	6508.14	1979.09	3413.35
Cre257	chromosome_9	6529291	6529479	intergenic	NA	NA	2.28	2.89	3.68
Cre258	chromosome_9	6560176	6560512	intron	Cre09.g408050	Mitochondrial transcription termination factor family protein	28.01	46.33	28.01
Cre259	Cre01.g006550.t1.3	320	508	exon	Cre01.g006550.t1.3	Unknown protein	1869.39	2164.69	5227.69
Cre260	Cre02.g089850.t1.2	2056	2244	exon	Cre02.g089850.t1.2	FACT complex subunit POB3	83.51	72.35	42.8
Cre261	Cre02.g109650.t1.3	4109	4339	exon	Cre02.g109650.t1.3	BEL1-like homeodomain 10	0	260.19	303.38
Cre262	Cre03.g198800.t1.2	200	451	exon	Cre03.g198800.t1.2	MYB domain protein	0	296.9	368.33
Cre263	Cre07.g352150.t2.1	94	303	exon	Cre07.g352150.t2.1	"Protein kinase, putative"	82.98	160.74	38.71
Cre264	Cre07.g352213.t1.2	908	1096	exon	Cre07.g352213.t1.2	Unknown protein	0.08	0.72	0.14
Cre265	Cre09.g403900.t1.2	2011	2199	exon	Cre09.g403900.t1.2	Flagellar associated protein	0.76	3.18	3.27
Cre266	Cre10.g459100.t1.3	1634	1843	exon	Cre10.g459100.t1.3	NA	17.66	37.15	16.63
Cre267	Cre12.g510500.t1.3	190	378	exon	Cre12.g510500.t1.3	Unknown protein	0.15	2.24	0.41
Cre268	Cre12.g548700.t1.2	115	555	exon	Cre12.g548700.t1.2	NA	211.48	872.35	287.09
Cre269	Cre14.g608750.t1.2	2774	2962	exon	Cre14.g608750.t1.2	Unknown protein	0.53	2.75	1.84
Cre270	Cre16.g653000.t1.3	3135	3323	exon	Cre16.g653000.t1.3	Tudor domain-containing protein 3	13.09	209.02	35.72
Cre271	Cre16.g653050.t1.3	1804	1992	exon	Cre16.g653050.t1.3	"Methyltransferase (SpoU-like, for rRNA)"	36.01	238	64.62
Cre272	Cre17.g725250.t1.2	226	414	exon	Cre17.g725250.t1.2	NA	54.51	236.05	70.41
Cre273	g11459.t1	3	317	exon	g11459.t1	NA	94.93	183.58	100.06
Cre274	g11543.t1	4969	5157	exon	g11543.t1	NA	977.4	1646.99	1314.11
Cre275	g11775.t1	2523	2774	exon	g11775.t1	NA	0.3	2.96	0.07
Cre276	g11902.t1	9610	9798	exon	g11902.t1	Unknown protein	0.23	4.77	1.02
Cre277	g12540.t2	1279	1467	exon	g12540.t2	Unknown protein	0.61	1.66	1.23
Cre278	g1256.t1	505	693	exon	g1256.t1	Unknown protein	11.34	43.94	16.29
Cre279	g1257.t1	591	779	exon	g1257.t1	NA	11.04	42.71	14.79
Cre280	g13392.t1	567	755	exon	g13392.t1	NA	1.37	5.35	2.18
Cre281	g13393.t1	581	769	exon	g13393.t1	NA	1.37	5.35	2.18
Cre282	g14782.t1	47	235	exon	g14782.t1	Unknown protein	3.88	7.95	2.93
Cre283	g15210.t1	3006	3257	exon	g15210.t1	cysteine protease (Papain family )	89.07	0.43	0.68
Cre284	g15386.t1	510	719	exon	g15386.t1	Unknown protein	4.03	16.41	6.48
Cre285	g15536.t1	291	479	exon	g15536.t1	NA	65.62	56.74	33.06
Cre286	g16557.t1	1237	1425	exon	g16557.t1	NA	8.98	32.31	12.54
Cre287	g16974.t1	2475	2663	exon	g16974.t1	Unknown protein	0.23	4.77	1.02
Cre288	g17773.t1	791	1021	exon	g17773.t1	Unknown protein	101.63	97.57	58.82
Cre289	g17778.t1	393	623	exon	g17778.t1	Unknown protein	101.55	97.57	58.82
Cre290	g18194.t1	447	656	exon	g18194.t1	NA	1.07	19.3	8.52
Cre291	g18202.t1	2353	2583	exon	g18202.t1	Endonuclease-reverse transcriptase	3.2	30.28	70.14
Cre292	g2798.t1	3661	3891	exon	g2798.t1	Endonuclease-reverse transcriptase	0.61	6.72	16.63
Cre293	g4027.t1	2551	2760	exon	g4027.t1	NA	109.55	99.02	92.83
Cre294	g5126.t1	200	388	exon	g5126.t1	Unknown protein	0.46	2.31	2.39
Cre295	g6277.t1	60	269	exon	g6277.t1	NA	0.23	0.65	10.36
Cre296	g6360.t1	116	304	exon	g6360.t1	NA	15.76	13.3	12.61
Cre297	g791.t1	45	275	exon	g791.t1	Unknown protein	309.92	596.26	817.37
Cre298	g9736.t1	127	357	exon	g9736.t1	Unknown protein	0.08	1.37	0
Cre299	scaffold_19	32216	32408	exon	g18123	Unknown protein	26.42	121.2	23.99
Cre300	scaffold_19	168346	168534	exon and intron	g18140	Low-CO2-inducible protein	27.79	41.92	90.65
Cre301	scaffold_21	18479	18667	exon and intron	g18162	NA	84.43	65.77	45.53
Cre302	scaffold_21	33532	33720	intergenic	NA	NA	1.45	12.72	5.59
Cre303	scaffold_21	36203	36475	exon	g18166	NA	51.77	113.11	67.68
Cre304	scaffold_21	122716	123051	exon	g18185	Unknown protein	92842.91	48117.84	18545.21
Cre305	scaffold_25	9086	9274	intergenic	NA	NA	2745.39	2047.53	1478.58
Cre306	scaffold_35	13721	13909	exon	g18358	Unknown protein	71.48	154.96	66.86
Cre307	scaffold_49	58	288	intergenic	NA	NA	87.47	155.17	61.48

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Female cone	Male cone
Cru001	PUT-163a-Cycas_rumphii-1125	17	475	exon	PUT-163a-Cycas_rumphii-1125	TIR-NBS-LRR resistance protein	32.62	45.94	29.68
Cru002	PUT-163a-Cycas_rumphii-11313	159	347	exon	PUT-163a-Cycas_rumphii-11313	Unknown protein	450.68	142.74	225.17
Cru003	PUT-163a-Cycas_rumphii-2951	194	382	exon	PUT-163a-Cycas_rumphii-2951	Unknown protein	4.26	3.16	3.79
Cru004	PUT-163a-Cycas_rumphii-4490	325	639	exon	PUT-163a-Cycas_rumphii-4490	MYB domain protein	199.63	152.21	534.47
Cru005	PUT-163a-Cycas_rumphii-5322	74	262	exon	PUT-163a-Cycas_rumphii-5322	Unknown protein	9.22	72.25	12.05
Cru006	PUT-163a-Cycas_rumphii-5584	31	219	exon	PUT-163a-Cycas_rumphii-5584	Unknown protein	5.67	5.96	5.13
Cru007	PUT-163a-Cycas_rumphii-7247	108	653	exon	PUT-163a-Cycas_rumphii-7247	Unknown protein	386.5	708.46	305.06
Cru008	PUT-163a-Cycas_rumphii-7373	388	723	exon	PUT-163a-Cycas_rumphii-7373	Suppressor of gene silencing 3 (SGS3)	8.86	5.61	9.6
Cru009	PUT-163a-Cycas_rumphii-7688	310	498	exon	PUT-163a-Cycas_rumphii-7688	Auxin response factor (ETTIN-like)	1.42	6.31	0.67
Cru010	PUT-163a-Cycas_rumphii-8400	8	196	exon	PUT-163a-Cycas_rumphii-8400	Unknown protein	12.77	34.72	11.38
Cru011	PUT-163a-Cycas_rumphii-8444	348	536	exon	PUT-163a-Cycas_rumphii-8444	Unknown protein	7.45	11.92	2.01
Cru012	PUT-163a-Cycas_rumphii-867	74	567	exon	PUT-163a-Cycas_rumphii-867	Unknown protein	1338.58	13.68	2793.53
Cru013	PUT-163a-Cycas_rumphii-8744	388	576	exon	PUT-163a-Cycas_rumphii-8744	TAS3	14.18	5.96	0.67

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower	Fruit
Csi001	chr1	220833	221126	exon	Cs1g01140	Disease resistance protein (RGA3)	6.81	0.38	54.61
Csi002	chr1	1039606	1039836	exon	Cs1g01880	Disease resistance protein (RGA2)	8.44	24.11	17.6
Csi003	chr1	1091098	1091328	exon	Cs1g01890	Disease resistance protein (RGA3)	8.76	24.11	17.6
Csi004	chr1	2087964	2088152	exon	Cs1g02820	Unknown protein	5.19	2.68	0
Csi005	chr1	4146816	4147025	exon	Cs1g04620	Cysteine/histidine-rich C1 domain-containing protein	9.41	0.38	0
Csi006	chr1	5528666	5529001	exon	Cs1g05730	Disease resistance protein (RPP13-like)	434.45	321.09	286.14
Csi007	chr1	6068370	6068558	exon	Cs1g06060	Ubiquitin-like protein	11.68	6.12	4.06
Csi008	chr1	6702703	6703038	exon	Cs1g06720	Disease resistance protein (RPM1-like)	9.08	2.3	1.35
Csi009	chr1	8538971	8539684	exon	Cs1g08080	Disease resistance protein (RGA3)	402.66	500.58	580.41
Csi010	chr1	8710498	8710812	intergenic	NA	NA	0.65	1.53	186.4
Csi011	chr1	8790040	8790583	intergenic	NA	NA	243.99	208.57	240.11
Csi012	chr1	8900547	8900735	exon	Cs1g08330	Disease resistance protein (RFL1)	1.3	0.77	18.96
Csi013	chr1	10703257	10703865	exon	Cs1g09350	Disease resistance protein (RGA2)	236.86	48.6	244.62
Csi014	chr1	11167621	11167851	exon	Cs1g09575	NA	101.56	259.09	747.4
Csi015	chr1	11172515	11172787	exon	Cs1g09580	NA	2.92	7.27	97.04
Csi016	chr1	11185467	11185718	exon	Cs1g09600	NA	98.31	213.93	796.59
Csi017	chr1	11216757	11217166	exon and intron	Cs1g09635	NA	190.78	272.49	2028.26
Csi018	chr1	11223525	11223839	exon and intron	Cs1g09640	NAC domain protein	0.65	1.53	187.75
Csi019	chr1	11250807	11251154	exon and intron	Cs1g09660	NAC domain protein	82.41	129.74	357.9
Csi020	chr1	11255827	11256173	exon and intron	Cs1g09665	NA	449.7	722.93	2651.99
Csi021	chr1	11261231	11261440	exon	Cs1g09670	NAC domain protein	1.95	2.68	45.58
Csi022	chr1	11358488	11358718	exon and intron	Cs1g09710	NAC domain protein	11.03	16.46	41.97
Csi023	chr1	12278028	12278403	exon and intron	Cs1g10260	"Vacuolar processing enzyme/asparaginyl endopeptidase, putative"	2.27	35.21	47.84
Csi024	chr1	13492916	13493188	intergenic	NA	NA	26.28	8.8	30.69
Csi025	chr1	13866001	13866189	exon	Cs1g11320	Disease resistance protein	18.17	8.42	49.65
Csi026	chr1	13866761	13867012	exon	Cs1g11320	Disease resistance protein	15.9	7.65	23.92
Csi027	chr1	13899826	13900014	intergenic	NA	NA	37.96	22.58	146.68
Csi028	chr1	13900067	13900255	intergenic	NA	NA	28.88	11.86	137.65
Csi029	chr1	13900424	13900697	intergenic	NA	NA	31.8	9.95	97.94
Csi030	chr1	13949105	13949335	exon	Cs1g11390	Disease resistance protein	12.01	6.89	15.35
Csi031	chr1	13963581	13963832	exon	Cs1g11410	Disease resistance protein	43.8	13.01	17.15
Csi032	chr1	13981189	13981568	exon	Cs1g11430	Disease resistance protein	97.99	66.59	197.23
Csi033	chr1	14290293	14290481	intergenic	NA	NA	16.87	9.18	58.22
Csi034	chr1	14971442	14971630	intergenic	NA	NA	9.41	12.63	9.03
Csi035	chr1	14971854	14972168	intergenic	NA	NA	18.49	19.52	75.37
Csi036	chr1	14993778	14993966	exon	Cs1g12050	Disease resistance protein	7.46	3.44	6.32
Csi037	chr1	15086942	15087130	exon	Cs1g12140	Disease resistance protein	43.48	26.41	70.41
Csi038	chr1	15087383	15087571	exon	Cs1g12140	Disease resistance protein	7.46	9.57	13.54
Csi039	chr1	15105021	15105312	exon	Cs1g12150	Disease resistance protein	48.34	47.84	164.73
Csi040	chr1	15179976	15180206	exon	Cs1g12170	Leucine-rich repeat-containing protein	41.86	14.16	50.55
Csi041	chr1	15213516	15213704	exon	Cs1g12210	Disease resistance protein (NB-ARC/LRR)	21.41	22.2	20.76
Csi042	chr1	15952289	15952519	exon	Cs1g12910	Disease resistance protein	113.56	94.15	69.96
Csi043	chr1	15952625	15952813	exon	Cs1g12910	Disease resistance protein	21.09	15.69	18.05
Csi044	chr1	15960451	15960639	intergenic	NA	NA	23.04	16.07	29.34
Csi045	chr1	15985957	15986147	exon	Cs1g12920	Disease resistance protein	53.86	59.32	79.88
Csi046	chr1	16008673	16008924	exon	Cs1g12940	Disease resistance protein (RFL1)	36.02	27.55	31.59
Csi047	chr1	16009010	16009198	exon	Cs1g12940	Disease resistance protein (RFL1)	51.91	58.55	78.08
Csi048	chr1	16036913	16037101	intergenic	NA	NA	103.83	74.24	28.43
Csi049	chr1	16097349	16097539	intergenic	NA	NA	50.94	57.79	76.27
Csi050	chr1	16104684	16104874	intergenic	NA	NA	50.94	57.79	76.27
Csi051	chr1	16120329	16120580	exon	Cs1g13010	Disease resistance protein (RPS5)	124.92	97.21	75.37
Csi052	chr1	16176640	16176828	exon	Cs1g13050	Disease resistance protein (RFL1)	21.09	15.69	18.05
Csi053	chr1	16364319	16364569	exon	Cs1g13270	Disease resistance protein (NB-ARC/LRR)	18.17	14.54	13.09
Csi054	chr1	16370754	16371572	intergenic	NA	NA	2563.24	2474.95	5716.95
Csi055	chr1	16499705	16500187	exon	Cs1g13430	Disease resistance protein (RPS5)	146.01	71.18	161.12
Csi056	chr1	17176086	17176465	exon	Cs1g14030	Disease resistance protein	45.75	47.46	68.6
Csi057	chr1	17257239	17257679	exon	Cs1g14090	Disease resistance protein (RPS5)	10.06	4.59	29.79
Csi058	chr1	17274247	17274561	intergenic	NA	NA	4.54	26.79	20.76
Csi059	chr1	18714334	18714564	exon	Cs1g15550	Leucine-rich repeat-containing protein	124.27	93.76	300.58
Csi060	chr1	20211927	20212178	exon	Cs1g17000	Leucine-rich repeat-containing protein	5.84	2.3	18.05
Csi061	chr1	20747680	20747889	exon	Cs1g17590	MYB domain protein	16.55	41.71	0
Csi062	chr1	22165920	22166108	exon	Cs1g19000	Disease resistance protein (TMV resistance protein N)	8.11	10.33	2.26
Csi063	chr1	22935117	22935368	exon	Cs1g19720	Chaperone protein DnaJ	5.84	3.44	60.93
Csi064	chr1	22962046	22962255	exon	Cs1g19760	Chaperone protein DnaJ	5.19	3.06	47.39
Csi065	chr1	23351629	23351817	exon	Cs1g20250	NA	237.18	187.14	602.07
Csi066	chr1	27945833	27946021	exon	Cs1g25670	Hydrolase (alpha/beta fold)	0	227.71	1.81
Csi067	chr2	6919017	6919248	exon and intron	Cs2g09440	Auxin response factor 6	10.06	36.74	6.77
Csi068	chr2	7070845	7071033	exon and intron	Cs2g09590	Putative uncharacterized protein Sb05g003370	11.36	16.84	41.97
Csi069	chr2	9926388	9926639	intergenic	NA	NA	244.32	62.38	350.23
Csi070	chr2	9926682	9926870	intergenic	NA	NA	55.48	55.87	58.22
Csi071	chr2	9942528	9942716	intergenic	NA	NA	3.89	2.68	14.44
Csi072	chr2	9946630	9946902	exon	Cs2g13250	Alpha-glucan water dikinase 2	0.97	4.59	34.75
Csi073	chr2	11088231	11088461	exon	Cs2g14270	AUXIN SIGNALING F-BOX 2	31.15	52.05	29.79
Csi074	chr2	15149042	15149356	exon	Cs2g18460	Disease resistance protein (RPH8A)	108.69	32.15	33.4
Csi075	chr2	15174463	15175050	exon	Cs2g18470	Disease resistance protein	178.45	50.9	65.89
Csi076	chr2	15215161	15215391	exon	Cs2g18480	Disease resistance protein (RPH8A)	26.61	6.51	13.09
Csi077	chr2	15232540	15232728	intergenic	NA	NA	31.8	9.95	9.48
Csi078	chr2	17414365	17414700	intergenic	NA	NA	1007.45	109.07	12.19
Csi079	chr2	26236429	26236617	exon	Cs2g26400	Disease resistance protein (RPP13-like)	4.54	8.8	6.77
Csi080	chr2	26238351	26238539	exon	Cs2g26400	Disease resistance protein (RPP13-like)	86.96	86.87	59.12
Csi081	chr2	26238709	26238897	exon	Cs2g26400	Disease resistance protein (RPP13-like)	16.22	9.95	20.31
Csi082	chr2	29897674	29898240	intergenic	NA	NA	41.86	113.28	397.17
Csi083	chr2	29910452	29910871	exon	Cs2g30590	Disease resistance protein (RPP13-like)	5.84	20.67	16.7
Csi084	chr2	30084785	30084973	exon	Cs2g30790	Receptor-like protein 12	30.82	5.74	34.3
Csi085	chr2	30090100	30090330	exon	Cs2g30800	Receptor-like protein 12	6.49	1.15	7.22
Csi086	chr2	30359752	30360255	intergenic	NA	NA	1540.54	900.12	3634.53
Csi087	chr2	30367967	30368554	exon	Cs2g30985	NA	4301.71	3876.04	5479.55
Csi088	chr3	208105	208440	exon	Cs3g01180	Disease resistance protein (RPP13-like)	19.14	12.63	21.21
Csi089	chr3	312427	312657	exon	Cs3g01280	Disease resistance protein (RPP13-like)	36.02	51.67	78.98
Csi090	chr3	332505	332693	intergenic	NA	NA	15.57	23.73	24.37
Csi091	chr3	350003	350296	exon	Cs3g01320	Disease resistance protein (RPP13-like)	55.48	67.74	71.31
Csi092	chr3	650591	650800	exon	Cs3g01540	Disease resistance protein (RPP13-like)	21.41	34.44	24.37
Csi093	chr3	2490439	2490627	intergenic	NA	NA	390	83.81	347.52
Csi094	chr3	2491164	2491520	intergenic	NA	NA	4674.51	736.32	2158.24
Csi095	chr3	2963418	2963690	exon	Cs3g02960	Disease resistance protein (RPP13-like)	25.63	40.18	18.96
Csi096	chr3	2964500	2964688	exon	Cs3g02960	Disease resistance protein (RPP13-like)	29.53	34.06	9.93
Csi097	chr3	3026397	3026700	intergenic	NA	NA	79.49	57.41	42.42
Csi098	chr3	3785207	3785668	exon	Cs3g03540	Disease resistance protein (RPP13-like)	240.1	184.46	282.08
Csi099	chr3	3831428	3831658	exon	Cs3g03570	Disease resistance protein (RPP13-like)	10.06	6.12	11.73
Csi100	chr3	4585192	4585380	exon	Cs3g03980	Leucine-rich repeat-containing protein	0	0	12.64
Csi101	chr3	6177144	6177395	exon	Cs3g04930	Disease resistance protein (RFL1)	71.06	73.1	38.36
Csi102	chr3	6177753	6177983	exon	Cs3g04930	Disease resistance protein (RFL1)	28.88	22.2	20.76
Csi103	chr3	6933022	6933336	exon	Cs3g05280	Disease resistance protein	39.91	107.54	180.53
Csi104	chr3	7008023	7008442	exon	Cs3g05320	NA	7400.31	8144.34	14439.73
Csi105	chr3	7468912	7469184	exon	Cs3g05700	TIR-NBS-LRR resistance protein	14.6	4.59	21.21
Csi106	chr3	7497713	7497964	exon	Cs3g05740	TIR-NBS-LRR resistance protein	14.6	4.59	21.21
Csi107	chr3	7498007	7498195	exon	Cs3g05740	TIR-NBS-LRR resistance protein	7.14	3.83	13.54
Csi108	chr3	7520442	7520693	exon	Cs3g05760	TIR-NBS-LRR resistance protein	8.44	4.59	14.44
Csi109	chr3	7527728	7527958	exon	Cs3g05770	TIR-NBS-LRR resistance protein	13.95	5.74	19.41
Csi110	chr3	7528001	7528189	exon	Cs3g05770	TIR-NBS-LRR resistance protein	3.24	0.77	11.28
Csi111	chr3	7663609	7664239	exon and intron	Cs3g05820	TIR-NBS-LRR resistance protein	208.63	132.03	908.52
Csi112	chr3	8913700	8913951	exon	Cs3g06500	Disease resistance protein (RPS2)	6.81	15.31	5.42
Csi113	chr3	11314606	11314794	exon	Cs3g07960	Disease resistance protein (RFL1)	0.32	1.91	5.42
Csi114	chr3	11334152	11334340	exon	Cs3g07970	Disease resistance protein (RFL1)	1.95	0.77	6.32
Csi115	chr3	11389000	11389293	intergenic	NA	NA	0	384.62	0
Csi116	chr3	11687621	11687872	exon	Cs3g08210	Disease resistance protein	39.58	62.38	206.26
Csi117	chr3	13503168	13503415	exon	Cs3g09495	[S] KOG4118 Uncharacterized conserved protein	42.5	32.15	58.67
Csi118	chr3	15416542	15416730	exon	Cs3g11110	Disease resistance protein (R1-A)	1.62	1.15	5.87
Csi119	chr3	15418121	15418309	exon	Cs3g11120	Disease resistance protein	14.28	20.67	18.96
Csi120	chr3	15577688	15577876	exon	Cs3g11210	Importin subunit alpha-1a	8.76	11.1	13.99
Csi121	chr3	15661947	15662156	intergenic	NA	NA	7.79	13.01	32.04
Csi122	chr3	16678014	16678223	exon	Cs3g12320	Disease resistance protein (RFL1)	198.89	182.55	373.25
Csi123	chr3	16680368	16680556	intergenic	NA	NA	5.84	0	5.42
Csi124	chr3	16689385	16689741	exon	Cs3g12330	Disease resistance protein (R1-A)	59.05	61.23	130.43
Csi125	chr3	16699227	16699415	exon	Cs3g12340	Disease resistance protein (RFL1)	11.68	5.74	14.89
Csi126	chr3	16699525	16699713	exon	Cs3g12340	Disease resistance protein (RFL1)	25.31	6.51	28.43
Csi127	chr3	17140873	17141061	exon	Cs3g12710	Disease resistance protein (RFL1)	5.52	2.68	9.93
Csi128	chr3	17227495	17227725	exon	Cs3g12760	Disease resistance protein (RFL1)	48.02	12.63	23.02
Csi129	chr3	17289694	17290092	intergenic	NA	NA	397.79	551.86	1111.62
Csi130	chr3	17292035	17292433	exon	Cs3g12810	Disease resistance protein (RPS5)	383.51	533.87	1095.37
Csi131	chr3	17327699	17327908	exon	Cs3g12850	Disease resistance protein (RFL1)	40.88	8.42	29.34
Csi132	chr3	17544258	17544573	exon	Cs3g13160	Disease resistance protein (RFL1)	7.79	20.67	42.88
Csi133	chr3	17611789	17611998	exon	Cs3g13200	Disease resistance protein	2.6	3.44	16.25
Csi134	chr3	17612084	17612272	exon	Cs3g13200	Disease resistance protein	8.11	10.33	13.99
Csi135	chr3	17624247	17624456	exon	Cs3g13210	Disease resistance protein (RFL1)	2.6	3.44	16.25
Csi136	chr3	17624542	17624730	exon	Cs3g13210	Disease resistance protein (RFL1)	8.11	10.33	13.99
Csi137	chr3	17851480	17851710	exon	Cs3g13390	Disease resistance protein (RGA3)	9.08	4.21	78.53
Csi138	chr3	17879243	17879431	exon	Cs3g13430	Disease resistance protein (RFL1)	5.84	8.04	24.37
Csi139	chr3	17879643	17879831	exon	Cs3g13430	Disease resistance protein (RFL1)	2.6	3.44	17.6
Csi140	chr3	18053627	18053857	exon and intron	Cs3g13690	Disease resistance protein (RGA3)	98.96	23.35	417.93
Csi141	chr3	18054424	18054675	exon	Cs3g13690	Disease resistance protein (RGA3)	21.41	8.04	75.82
Csi142	chr3	18056868	18057295	intergenic	NA	NA	113.24	29.47	491.49
Csi143	chr3	18101270	18101521	exon and intron	Cs3g13710	Disease resistance protein (RGA2)	11.68	3.06	99.29
Csi144	chr3	18129736	18130163	exon	Cs3g13730	Disease resistance protein (RGA1)	113.24	29.47	491.49
Csi145	chr3	18130945	18131133	exon	Cs3g13730	Disease resistance protein (RGA1)	14.6	6.51	74.47
Csi146	chr3	18155218	18155511	exon	Cs3g13740	Disease resistance protein (RGA3)	8.11	7.65	111.48
Csi147	chr3	19407706	19408104	exon	Cs3g15200	Disease resistance protein (RFL1)	132.38	76.54	60.03
Csi148	chr4	1237565	1237753	intergenic	orange1.1g034661m.g	TAS3c	4.22	78.84	1.35
Csi149	chr4	2490063	2490251	exon	Cs4g04300	Calcium-transporting ATPase 8	92.8	2.68	3.16
Csi150	chr4	3472705	3472914	exon	Cs4g05660	Putative uncharacterized protein OJ1111_A10.1	0	11.48	0.9
Csi151	chr4	4923908	4924138	exon	Cs4g07730	Disease resistance protein (RPP13-like)	10.06	48.22	13.99
Csi152	chr4	17755561	17755749	exon and intron	Cs4g18140	Blue copper protein (Precursor)	6.81	0.38	18.5
Csi153	chr4	17849844	17850095	exon	Cs4g18250	MYB domain protein	48.02	2.68	0
Csi154	chr4	19586436	19586624	exon	Cs4g20210	Putative uncharacterized protein	20.77	5.36	2.26
Csi155	chr5	2745153	2745446	exon	Cs5g04670	NA	35.69	47.84	113.73
Csi156	chr5	2749634	2749864	intron	Cs5g04680	Transcription regulator (ANAC012/NST3/SND1)	5.84	30.62	147.58
Csi157	chr5	2758993	2759181	exon	Cs5g04690	NA	4.87	32.15	122.31
Csi158	chr5	4031652	4031945	exon	Cs5g06510	"Receptor-like kinase, RLP"	0	133.56	310.96
Csi159	chr5	5651043	5651294	exon	Cs5g08560	MYB domain protein	261.52	53.58	0
Csi160	chr5	7047328	7047579	exon	Cs5g10180	SPX domain-containing protein	0.97	9.18	40.17
Csi161	chr5	11701154	11701447	intergenic	NA	NA	0	383.85	0
Csi162	chr5	14132051	14132260	intergenic	NA	NA	39.26	27.17	16.25
Csi163	chr5	18613315	18613503	exon	Cs5g18280	TIR-NBS-LRR resistance protein	24.66	14.54	23.92
Csi164	chr5	18841577	18842185	exon	Cs5g18480	Disease resistance protein (TMV resistance protein N)	428.29	261.77	1131.93
Csi165	chr5	20176975	20177353	exon	Cs5g19430	Disease resistance protein (TMV resistance protein N)	13.63	74.63	18.05
Csi166	chr5	20188302	20188679	exon	Cs5g19440	TIR-NBS-LRR resistance protein	8.44	64.29	366.48
Csi167	chr5	20223119	20223422	exon	Cs5g19460	TIR-NBS-LRR resistance protein	6.16	57.02	13.99
Csi168	chr5	20339224	20339601	exon	Cs5g19570	Disease resistance protein (TMV resistance protein N)	0	18.37	216.64
Csi169	chr5	20835751	20835939	exon	Cs5g19850	Disease resistance protein	0	6.51	7.22
Csi170	chr5	20846774	20846962	intergenic	NA	NA	0	5.36	8.12
Csi171	chr5	20870839	20871111	exon	Cs5g19880	Disease resistance protein (TMV resistance protein N)	4.22	2.68	14.44
Csi172	chr5	20935783	20936013	exon	Cs5g19920	Disease resistance protein (TMV resistance protein N)	9.08	13.78	35.2
Csi173	chr5	20936161	20936391	exon	Cs5g19920	Disease resistance protein (TMV resistance protein N)	5.84	14.54	18.05
Csi174	chr5	21431267	21431497	exon	Cs5g20270	TIR-NBS-LRR resistance protein	2.27	15.69	54.16
Csi175	chr5	21523468	21523719	intergenic	NA	NA	6.81	98.74	47.39
Csi176	chr5	21547644	21547947	exon	Cs5g20360	TIR-NBS-LRR resistance protein	4.54	63.15	23.02
Csi177	chr5	21707926	21708135	exon	Cs5g20420	Glucosyltransferase (anthocyanin 5-O; UDP-)	4.54	2.3	27.53
Csi178	chr5	22193879	22194151	exon	Cs5g20755	NA	7.14	9.18	11.28
Csi179	chr5	22523165	22523541	exon	Cs5g21020	Disease resistance protein (RPP13-like)	26.28	38.65	68.6
Csi180	chr5	22540819	22541049	exon	Cs5g21040	Disease resistance protein (RPP13-like)	26.61	9.95	26.18
Csi181	chr5	22565221	22565489	intergenic	NA	NA	6.49	6.89	8.12
Csi182	chr5	22716538	22716726	intergenic	NA	NA	62.62	16.46	90.27
Csi183	chr5	22716998	22717228	intergenic	NA	NA	61.32	21.05	61.38
Csi184	chr5	22717577	22717765	intergenic	NA	NA	13.95	4.21	9.48
Csi185	chr5	24516170	24516715	exon	Cs5g21975	Disease resistance protein (RGA4)	168.07	39.42	459.9
Csi186	chr5	24577910	24578162	exon	Cs5g22030	Disease resistance protein (RFL1)	7.79	31	10.83
Csi187	chr5	24578248	24578499	exon	Cs5g22030	Disease resistance protein (RFL1)	15.57	49.37	30.24
Csi188	chr5	24666740	24667054	exon	Cs5g22150	Disease resistance protein (RPP13-like)	174.56	144.66	211.22
Csi189	chr5	24667184	24667372	exon	Cs5g22150	Disease resistance protein (RPP13-like)	83.71	51.28	83.04
Csi190	chr5	24843865	24844053	exon and intron	Cs5g22330	Disease resistance protein (RPP13-like)	5.19	3.83	12.64
Csi191	chr5	24911111	24911299	exon	Cs5g22370	TIR-NBS-LRR resistance protein	0	1.15	7.22
Csi192	chr5	24922693	24922881	exon	Cs5g22380	Disease resistance protein (TMV resistance protein N)	0	1.15	7.22
Csi193	chr5	25392383	25392571	exon	Cs5g22710	Disease resistance protein (RPP13-like)	0.97	1.91	50.55
Csi194	chr5	25844799	25845071	intergenic	NA	NA	25.31	91.08	225.21
Csi195	chr5	27140507	27140737	intergenic	NA	NA	3.24	31.38	17.15
Csi196	chr5	27143426	27143656	intergenic	NA	NA	3.57	32.53	18.05
Csi197	chr5	29032807	29033016	exon	Cs5g26170	Disease resistance protein (RFL1)	4.54	11.1	37.91
Csi198	chr5	29064177	29064365	exon	Cs5g26190	Disease resistance protein	8.44	10.72	71.31
Csi199	chr5	30897722	30898078	exon	Cs5g28645	Disease resistance protein (NB-ARC/LRR)	25.63	32.53	47.39
Csi200	chr5	30999310	30999603	exon	Cs5g28770	Disease resistance protein (RGA4)	20.77	11.86	110.57
Csi201	chr5	31576151	31577032	exon	Cs5g29510	Disease resistance protein (RPP13-like)	1141.45	993.88	2068.88
Csi202	chr5	33777352	33777645	exon	Cs5g32500	Transport inhibitor response1 (TIR1/Auxin F-box)	59.05	159.59	51.9
Csi203	chr6	128045	128317	exon	Cs6g01040	Disease resistance protein (RPP13-like)	355.61	288.56	206.26
Csi204	chr6	184991	185252	exon	Cs6g01070	Disease resistance protein (RPP13-like)	4.54	28.32	18.96
Csi205	chr6	217229	217417	exon	Cs6g01080	Disease resistance protein (RPP13-like)	5.84	11.86	15.8
Csi206	chr6	217461	217670	exon	Cs6g01080	Disease resistance protein (RPP13-like)	16.22	16.46	51.9
Csi207	chr6	217964	218152	exon	Cs6g01080	Disease resistance protein (RPP13-like)	9.08	17.22	4.96
Csi208	chr6	1648983	1649255	exon	Cs6g02100	Disease resistance protein	18.82	34.06	50.55
Csi209	chr6	1681191	1681379	exon	Cs6g02120	Disease resistance protein	5.19	11.48	4.51
Csi210	chr6	1688797	1689069	exon	Cs6g02130	Disease resistance protein	18.82	34.06	50.55
Csi211	chr6	1704265	1704579	exon	Cs6g02150	NA	17.2	30.62	50.55
Csi212	chr6	2232605	2232793	intergenic	NA	NA	14.28	23.35	45.58
Csi213	chr6	3233307	3233516	intergenic	NA	NA	7.46	8.42	20.31
Csi214	chr6	3911622	3911917	exon	Cs6g03500	"Argonaute and Dicer protein, PAZ"	30.5	32.53	38.81
Csi215	chr6	3912841	3913029	exon	Cs6g03500	"Argonaute and Dicer protein, PAZ"	36.34	95.29	113.28
Csi216	chr6	3972467	3972655	exon	Cs6g03520	Dicer-like protein 4	90.85	99.12	73.11
Csi217	chr6	4491311	4491625	exon	Cs6g03920	Disease resistance protein	0.97	4.21	18.05
Csi218	chr6	6507431	6507661	exon	Cs6g05250	Disease resistance protein (RPP13-like)	3.57	32.53	12.64
Csi219	chr6	8744162	8744371	exon	Cs6g06820	Importin subunit alpha-1a	8.11	6.51	5.42
Csi220	chr6	13973575	13973763	intergenic	NA	TAS4	94.74	352.47	16.25
Csi221	chr6	15788331	15788562	exon	Cs6g14690	Disease resistance protein (RPP13-like)	62.3	12.25	1.81
Csi222	chr6	18772553	18772741	intergenic	NA	NA	94.74	352.47	16.25
Csi223	chr7	769854	770252	exon	Cs7g02220	Disease resistance protein (RPP13-like)	42.18	10.33	9.03
Csi224	chr7	2574941	2575129	exon and intron	Cs7g04970	Methyltransferase (tRNA cytosine(38)-C(5))	0.97	4.98	8.12
Csi225	chr7	10236592	10236822	exon	Cs7g14510	Disease resistance protein (NB-ARC/LRR)	83.06	235.36	116.89
Csi226	chr7	10238060	10238248	exon	Cs7g14510	Disease resistance protein (NB-ARC/LRR)	6.81	23.73	6.32
Csi227	chr7	10251244	10251516	exon	Cs7g14540	Disease resistance protein (NB-ARC/LRR)	28.23	114.81	27.53
Csi228	chr7	11578408	11578638	exon	Cs7g16030	Disease resistance protein (RGA3)	6.16	9.18	4.96
Csi229	chr7	20080570	20081073	exon	Cs7g22420	NAC domain protein	13.95	88.79	252.29
Csi230	chr7	20088147	20088356	exon	Cs7g22430	NAC domain protein	1.62	18.37	41.52
Csi231	chr7	20098271	20098480	exon	Cs7g22450	NAC domain protein	1.62	18.37	41.52
Csi232	chr7	20104775	20105005	intergenic	NA	NA	57.75	64.68	64.99
Csi233	chr7	20124977	20125249	exon	Cs7g22470	NAC domain protein	314.08	322.62	658.03
Csi234	chr7	20226333	20226542	exon	Cs7g22510	NAC domain protein	73.33	26.02	78.53
Csi235	chr7	20230453	20230746	intergenic	NA	NA	73.33	26.41	78.98
Csi236	chr7	20275304	20275555	exon and intron	Cs7g22540	NAC domain protein	7.14	4.59	41.52
Csi237	chr7	20295801	20295989	exon	Cs7g22560	NAC domain protein	7.79	11.1	37.91
Csi238	chr7	26651520	26651750	exon and intron	Cs7g26085	NA	39.58	47.46	54.61
Csi239	chr7	26651792	26652337	intron	Cs7g26085	NA	508.76	404.14	667.96
Csi240	chr7	27404254	27404547	exon	Cs7g26730	Disease resistance protein (TMV resistance protein N)	19.47	21.43	23.02
Csi241	chr7	27450853	27451104	exon	Cs7g26750	Disease resistance protein (TMV resistance protein N)	22.39	15.69	23.47
Csi242	chr7	28939132	28939425	intergenic	NA	NA	10.38	14.54	19.86
Csi243	chr8	6296638	6296826	intergenic	NA	NA	50.62	27.94	56.42
Csi244	chr8	6332941	6333129	exon	Cs8g08160	Pentatricopeptide repeat-containing protein	50.94	27.94	56.42
Csi245	chr8	6792867	6793097	exon	Cs8g08549	NA	11.68	8.42	22.11
Csi246	chr8	6815594	6815929	exon	Cs8g08570	Pentatricopeptide repeat-containing protein	78.2	65.44	208.96
Csi247	chr8	9670960	9671316	exon and intron	Cs8g10560	Disease resistance protein	95.07	36.36	97.94
Csi248	chr8	9689957	9690313	intergenic	NA	NA	95.07	36.36	97.94
Csi249	chr8	9699095	9699451	exon and intron	Cs8g10570	Disease resistance protein (TMV resistance protein N)	95.07	36.36	97.94
Csi250	chr8	15909648	15909878	intergenic	NA	NA	8.76	492.92	5.42
Csi251	chr8	19841909	19842097	exon	Cs8g16930	Auxin response factor 4	18.49	6.89	0.45
Csi252	chr9	4268091	4268575	exon	Cs9g06846	NA	1263.45	827.41	1438.38
Csi253	chr9	11295552	11295782	exon	Cs9g12780	Putative uncharacterized protein OJ1111_A10.1	0	12.63	0.9
Csi254	chrUn	6602374	6602709	exon	orange1.1t00557	NA	41.86	14.16	79.43
Csi255	chrUn	22217207	22217437	intergenic	NA	NA	43.15	17.99	68.6
Csi256	chrUn	23148276	23148506	exon	orange1.1t01356	Disease resistance protein	49.97	38.65	68.6
Csi257	chrUn	23196991	23197179	exon	orange1.1t01359	Disease resistance protein	7.79	9.57	13.54
Csi258	chrUn	23197474	23197662	exon	orange1.1t01359	Disease resistance protein	43.48	26.41	70.41
Csi259	chrUn	23277773	23278025	exon	orange1.1t01362	Disease resistance protein (NB-ARC/LRR)	36.02	18.37	83.95
Csi260	chrUn	28546899	28547129	exon	orange1.1t01815	Disease resistance protein (TMV resistance protein N)	15.9	11.48	9.48
Csi261	chrUn	28669861	28670154	intergenic	NA	NA	76.57	31.38	69.5
Csi262	chrUn	28900963	28901529	exon	orange1.1t01829	TIR-NBS-LRR resistance protein	96.04	98.74	290.65
Csi263	chrUn	29057084	29057387	exon	orange1.1t01840	TIR-NBS-LRR resistance protein	4.54	46.31	18.96
Csi264	chrUn	29140706	29140936	exon	orange1.1t01844	TIR-NBS-LRR resistance protein	6.81	86.49	34.75
Csi265	chrUn	30134461	30134721	exon	orange1.1t01898	Disease resistance protein (RGA3)	201.49	183.32	336.69
Csi266	chrUn	30429799	30430050	exon	orange1.1t01918	Disease resistance protein (RGA1)	109.67	91.85	277.11
Csi267	chrUn	30546601	30546832	exon	orange1.1t01926	Disease resistance protein (RGA3)	12.65	15.69	21.21
Csi268	chrUn	32965158	32965558	intergenic	NA	NA	12.65	31.76	26.63
Csi269	chrUn	32972093	32972386	exon	orange1.1t02132	Disease resistance protein (TMV resistance protein N)	3.57	266.36	7.67
Csi270	chrUn	33136459	33136678	exon	orange1.1t02140	TIR-NBS-LRR resistance protein	7.46	62	18.5
Csi271	chrUn	33315871	33316059	exon	orange1.1t02159	Disease resistance protein (TMV resistance protein N)	3.24	15.69	13.99
Csi272	chrUn	33390784	33390972	intergenic	NA	NA	5.52	5.74	14.89
Csi273	chrUn	33471661	33472039	exon	orange1.1t02171	TIR-NBS-LRR resistance protein	76.57	85.73	104.71
Csi274	chrUn	33487208	33487521	exon	orange1.1t02175	WRKY transcription factor	42.83	63.53	48.29
Csi275	chrUn	35666572	35666907	exon	orange1.1t02367	basic helix-loop-helix (bHLH) protein	24.66	69.65	9.48
Csi276	chrUn	37826373	37826582	intergenic	NA	NA	2.92	2.68	15.35
Csi277	chrUn	38086419	38086733	exon	orange1.1t02495	Disease resistance protein (RPP13-like)	23.69	13.78	32.04
Csi278	chrUn	38110767	38111585	exon	orange1.1t02498	Disease resistance protein	1390.64	738.62	1306.59
Csi279	chrUn	38339469	38339762	exon	orange1.1t02518	Disease resistance protein (RGA3)	10.71	6.12	108.77
Csi280	chrUn	42231207	42231395	intergenic	NA	NA	20.12	1.91	9.93
Csi281	chrUn	42232158	42232451	intergenic	NA	NA	115.18	28.7	81.24
Csi282	chrUn	42232536	42232724	intergenic	NA	NA	27.25	9.57	21.21
Csi283	chrUn	48744850	48745101	exon	orange1.1t03137	Disease resistance protein (RPS5)	39.58	62.38	206.26
Csi284	chrUn	49451137	49451410	intergenic	NA	NA	381.57	132.42	175.11
Csi285	chrUn	49452623	49452811	intergenic	NA	NA	23.04	4.59	7.67
Csi286	chrUn	49454271	49454732	exon and intron	orange1.1t03192	NA	300.45	155.38	257.71
Csi287	chrUn	49475088	49475444	exon and intron	orange1.1t05881	NA	11009.3	8178.79	13236.5
Csi288	chrUn	51123673	51123861	intergenic	NA	NA	59.38	23.73	3.16
Csi289	chrUn	53221543	53221773	exon and intron	orange1.1t03475	Feruloyl esterase A	2.92	1.15	92.07
Csi290	chrUn	53275387	53275764	exon	orange1.1t03481	Disease resistance protein (RPP13-like)	14.6	16.07	103.81
Csi291	chrUn	53332645	53332875	intergenic	NA	NA	11.03	19.52	108.32
Csi292	chrUn	53373973	53374791	exon	orange1.1t03486	Disease resistance protein (RPP13-like)	93.77	124.38	660.74
Csi293	chrUn	53387479	53387794	exon	orange1.1t03487	Disease resistance protein (RPP13-like)	9.08	26.79	60.03
Csi294	chrUn	53813496	53813684	exon	orange1.1t03509	Disease resistance protein (TMV resistance protein N)	0	0.77	6.32
Csi295	chrUn	53978055	53978243	exon	orange1.1t03523	Disease resistance protein (TMV resistance protein N)	0	0.77	6.32
Csi296	chrUn	54083234	54083422	exon	orange1.1t03534	Disease resistance protein (RPP13-like)	30.5	25.26	23.47
Csi297	chrUn	54083447	54083635	exon	orange1.1t03534	Disease resistance protein (RPP13-like)	8.11	30.23	23.92
Csi298	chrUn	54084380	54084568	exon	orange1.1t03534	Disease resistance protein (RPP13-like)	23.69	36.74	18.5
Csi299	chrUn	55758998	55759207	exon	orange1.1t03640	Disease resistance protein (RGA2)	38.61	23.35	53.71
Csi300	chrUn	55864271	55864459	intergenic	NA	NA	33.1	48.22	20.31
Csi301	chrUn	55865556	55865744	intergenic	NA	NA	12.65	15.69	18.96
Csi302	chrUn	55904108	55904338	exon	orange1.1t03647	Disease resistance protein (RPP13-like)	69.43	68.5	45.13
Csi303	chrUn	55904549	55904737	exon	orange1.1t03647	Disease resistance protein (RPP13-like)	30.17	32.91	24.37
Csi304	chrUn	55909642	55909830	exon	orange1.1t03648	Disease resistance protein (RPP13-like)	21.41	76.54	42.88
Csi305	chrUn	55909946	55910134	exon	orange1.1t03648	Disease resistance protein (RPP13-like)	33.1	48.22	20.31
Csi306	chrUn	55910301	55910489	exon	orange1.1t03648	Disease resistance protein (RPP13-like)	74.95	75.78	111.93
Csi307	chrUn	56680510	56680740	exon	orange1.1t03701	Disease resistance protein	4.22	36.74	23.47
Csi308	chrUn	56744290	56744478	exon	orange1.1t03707	Disease resistance protein	0.65	1.15	11.28
Csi309	chrUn	56877057	56877371	exon	orange1.1t03712	Disease resistance protein	56.46	76.16	263.57
Csi310	chrUn	56896469	56896783	exon	orange1.1t03713	Disease resistance protein	49.97	68.89	236.95
Csi311	chrUn	56979073	56979282	intergenic	NA	NA	10.38	19.14	92.07
Csi312	chrUn	57195243	57195809	exon	orange1.1t03732	Disease resistance protein (RGA3)	569.43	557.6	2845.16
Csi313	chrUn	57226439	57226742	exon	orange1.1t03734	Disease resistance protein (RGA2)	458.79	611.18	882.79
Csi314	chrUn	57334836	57335159	intergenic	NA	NA	542.17	542.29	908.52
Csi315	chrUn	57394832	57395230	exon	orange1.1t03742	Disease resistance protein (RPH8A)	45.75	62.38	50.1
Csi316	chrUn	59556100	59556288	exon	orange1.1t03874	Disease resistance protein (RPP13-like)	12.01	9.18	7.22
Csi317	chrUn	59623011	59623199	exon	orange1.1t03879	Disease resistance protein (RPP13-like)	33.1	48.22	20.31
Csi318	chrUn	59623408	59623596	exon	orange1.1t03879	Disease resistance protein (RPP13-like)	44.78	65.44	69.5
Csi319	chrUn	59682171	59682359	intergenic	NA	NA	12.01	13.39	4.51
Csi320	chrUn	59682484	59682807	intergenic	NA	NA	93.77	104.48	106.96
Csi321	chrUn	62943023	62943211	exon	orange1.1t04055	AP2 domain transcription factor (APETALA 2)	1.3	87.64	3.61
Csi322	chrUn	63155452	63155661	exon	orange1.1t04079	Importin subunit alpha-1a	7.46	13.01	32.04
Csi323	chrUn	63188478	63188708	exon	orange1.1t04084	Importin subunit alpha-1a	7.79	13.01	32.5
Csi324	chrUn	63817688	63817960	exon	orange1.1t04119	Pentatricopeptide repeat-containing protein	39.26	35.21	163.83
Csi325	chrUn	63845357	63845587	exon	orange1.1t04122	Pentatricopeptide repeat-containing protein	49.64	23.73	72.21
Csi326	chrUn	63868125	63868334	exon	orange1.1t04123	Pentatricopeptide repeat-containing protein	10.38	6.12	31.59
Csi327	chrUn	63897516	63897704	intergenic	NA	NA	5.52	3.06	8.12
Csi328	chrUn	63984125	63984313	exon	orange1.1t04127	Pentatricopeptide repeat-containing protein	5.52	3.06	8.12
Csi329	chrUn	63985571	63985759	exon	orange1.1t04127	Pentatricopeptide repeat-containing protein	1.95	4.21	5.87
Csi330	chrUn	64024900	64025235	intergenic	NA	NA	12.98	5.36	19.86
Csi331	chrUn	64026417	64026647	intergenic	NA	NA	369.56	466.13	784.41
Csi332	chrUn	65641799	65642029	intergenic	NA	NA	39.58	25.26	53.71
Csi333	chrUn	65680992	65681201	intergenic	NA	NA	54.19	63.53	65.44
Csi334	chrUn	65700838	65701068	intergenic	NA	NA	69.11	68.5	45.13
Csi335	chrUn	65735997	65736185	exon	orange1.1t04211	Disease resistance protein (RGA2)	15.57	15.69	17.6
Csi336	chrUn	66974417	66974710	intergenic	NA	NA	25.63	9.95	17.6
Csi337	chrUn	71027500	71027772	exon and intron	orange1.1t04509	Disease resistance protein (RGA3)	3.89	19.9	0.9
Csi338	chrUn	71080073	71080261	exon	orange1.1t04513	Disease resistance protein (RGA3)	2.92	4.59	13.09
Csi339	chrUn	71108136	71108408	exon	orange1.1t04515	Disease resistance protein (RGA3)	6.49	22.2	1.35
Csi340	chrUn	71200318	71200506	exon	orange1.1t04520	Disease resistance protein	43.48	26.41	70.41
Csi341	chrUn	71261451	71261660	intergenic	NA	NA	33.42	24.49	83.04
Csi342	chrUn	71465485	71465883	intergenic	NA	NA	265.41	376.2	499.62
Csi343	chrUn	71475416	71475604	intergenic	NA	NA	5.52	2.68	9.93
Csi344	chrUn	71560499	71560708	exon	orange1.1t04537	Disease resistance protein	6.49	4.21	13.54
Csi345	chrUn	72320753	72320983	exon	orange1.1t04573	TIR-NBS-LRR resistance protein	6.81	86.49	34.75
Csi346	chrUn	72357745	72358038	intergenic	NA	NA	109.34	27.94	183.24
Csi347	chrUn	72358363	72358552	intergenic	NA	NA	76.57	32.15	148.49
Csi348	chrUn	72376890	72377267	intergenic	NA	NA	127.51	33.68	209.42
Csi349	chrUn	72377404	72377592	intergenic	NA	NA	94.09	17.22	170.6
Csi350	chrUn	72391075	72391263	intergenic	NA	NA	16.22	4.98	12.19
Csi351	chrUn	72580557	72580745	exon	orange1.1t04592	Disease resistance protein (R1-A)	7.14	4.59	2.71
Csi352	chrUn	74040661	74040922	intergenic	NA	NA	457.81	610.8	880.54
Csi353	chrUn	76575919	76576277	intergenic	NA	NA	181.37	208.57	862.48
Csi354	chrUn	77298800	77299030	exon and intron	orange1.1t04831	Disease resistance protein	20.12	10.33	21.21
Csi355	chrUn	77462015	77462266	intergenic	NA	NA	7.14	16.07	6.32
Csi356	chrUn	78703061	78703249	exon and intron	orange1.1t04913	TIR-NBS-LRR resistance protein	0.32	12.63	6.77
Csi357	chrUn	80998702	80998890	intergenic	NA	NA	21.74	19.14	28.43
Csi358	chrUn	80998933	80999268	intergenic	NA	NA	19.79	22.58	25.27
Csi359	chrUn	81119077	81119286	exon	orange1.1t05028	NA	6.16	13.78	1.35
Csi360	chrUn	81119308	81119496	exon	orange1.1t05028	NA	6.49	13.01	4.51
Csi361	chrUn	81502689	81502898	intergenic	NA	NA	7.46	13.01	32.04
Csi362	chrUn	81503110	81503298	intergenic	NA	NA	1.95	1.91	7.22
Csi363	chrUn	81847988	81848176	intergenic	NA	NA	1.62	2.68	20.76
Csi364	chrUn	82531666	82532013	exon and intron	orange1.1t05093	NAC domain protein	82.41	129.74	357.9
Csi365	chrUn	83352830	83353018	exon	orange1.1t05139	Disease resistance protein (TMV resistance protein N)	3.57	17.6	17.6
Csi366	chrUn	83850032	83850220	intergenic	NA	NA	2.92	4.59	13.09
Csi367	chrUn	84485962	84486171	exon	orange1.1t05207	Disease resistance protein	33.42	24.49	83.04
Csi368	chrUn	84487372	84487560	exon	orange1.1t05207	Disease resistance protein	4.22	2.3	3.16
Csi369	chrUn	85050740	85050992	exon	orange1.1t05262	Disease resistance protein	402.33	605.82	761.39
Csi370	chrUn	85063962	85064150	intergenic	NA	NA	0.65	1.15	11.28
Csi371	chrUn	85113656	85113844	intergenic	NA	NA	1.62	1.15	5.87
Csi372	chrUn	85318176	85318532	exon	orange1.1t05289	Disease resistance protein (R1-A)	59.05	61.23	130.43
Csi373	chrUn	85559665	85559874	exon	orange1.1t05310	Disease resistance protein (R1-A)	53.86	60.85	125.02
Csi374	chrUn	88896531	88896761	exon	orange1.1t05684	Receptor-like protein (Toll/interleukin-1 receptor)	23.69	20.28	20.31
Csi375	Cs1g01140.1	643	873	exon	Cs1g01140.1	Disease resistance protein (RGA3)	4.87	0.38	36.11
Csi376	Cs1g09575.1	362	613	exon	Cs1g09575.1	NA	52.24	133.95	435.98
Csi377	Cs1g09590.1	347	577	exon	Cs1g09590.1	NA	0.65	0.77	9.03
Csi378	Cs1g09665.1	416	604	exon	Cs1g09665.1	NA	286.82	427.1	3127.24
Csi379	Cs1g09710.1	168	419	exon	Cs1g09710.1	NAC domain protein	20.12	32.91	117.34
Csi380	Cs1g11410.1	921	1109	exon	Cs1g11410.1	Disease resistance protein	35.69	8.04	11.28
Csi381	Cs1g12050.1	451	639	exon	Cs1g12050.1	Disease resistance protein	5.84	19.52	11.28
Csi382	Cs1g12150.1	220	408	exon	Cs1g12150.1	Disease resistance protein	17.85	17.6	76.73
Csi383	Cs1g12190.1	493	681	exon	Cs1g12190.1	Disease resistance protein	20.44	9.18	21.66
Csi384	Cs1g12190.1	1024	1212	exon	Cs1g12190.1	Disease resistance protein	5.84	43.63	32.95
Csi385	Cs1g12940.1	895	1083	exon	Cs1g12940.1	Disease resistance protein	16.22	16.07	61.83
Csi386	Cs1g13010.1	705	893	exon	Cs1g13010.1	Disease resistance protein	22.39	19.9	45.58
Csi387	Cs1g13010.1	1205	1393	exon	Cs1g13010.1	Disease resistance protein	36.99	23.73	10.83
Csi388	Cs1g13030.1	944	1174	exon	Cs1g13030.1	Disease resistance protein	87.93	19.52	11.73
Csi389	Cs1g13050.1	901	1089	exon	Cs1g13050.1	Disease resistance protein	2.92	7.27	6.77
Csi390	Cs2g26460.1	3744	3932	exon	Cs2g26460.1	Disease resistance protein (RPP13-like)	19.14	2.68	9.03
Csi391	Cs3g13340.1	702	890	exon	Cs3g13340.1	Disease resistance protein (RGA4)	1.95	0	26.18
Csi392	Cs5g20580.1	1374	1562	exon	Cs5g20580.1	Disease resistance protein (RPP13-like)	25.31	6.89	11.28
Csi393	Cs5g21020.1	1136	1324	exon	Cs5g21020.1	Disease resistance protein (RPP13-like)	14.28	38.27	93.88
Csi394	Cs5g25680.1	168	356	exon	Cs5g25680.1	Germin-like protein subfamily 1 member 17	0	0	9.48
Csi395	Cs7g22460.9	523	711	exon	Cs7g22460.9	NA	23.04	61.23	18.5
Csi396	Cs8g08210.1	191	379	exon	Cs8g08210.1	Pentatricopeptide repeat-containing protein	29.2	48.6	42.42
Csi397	Cs8g08220.1	207	437	exon	Cs8g08220.1	Pentatricopeptide repeat-containing protein	49.32	17.6	46.49
Csi398	Cs8g08520.2	517	747	exon	Cs8g08520.2	Pentatricopeptide repeat-containing protein	131.08	29.09	169.25
Csi399	orange1.1t02140.1	1856	2044	exon	orange1.1t02140.1	TIR-NBS-LRR resistance protein	4.54	1.91	6.32
Csi400	orange1.1t02416.1	952	1140	exon	orange1.1t02416.1	NA	18.82	30.62	0.45
Csi401	orange1.1t03640.1	712	900	exon	orange1.1t03640.1	Disease resistance protein (RGA2)	37.31	21.43	49.65
Csi402	orange1.1t03874.1	984	1172	exon	orange1.1t03874.1	Disease resistance protein (RPP13-like)	11.03	11.48	4.96
Csi403	orange1.1t03874.1	2574	2762	exon	orange1.1t03874.1	Disease resistance protein (RPP13-like)	4.87	3.83	12.19
Csi404	orange1.1t04124.1	293	523	exon	orange1.1t04124.1	Pentatricopeptide repeat-containing protein	51.91	44.01	84.4
Csi405	orange1.1t04517.1	681	869	exon	orange1.1t04517.1	Disease resistance protein	28.55	9.57	52.35
Csi406	orange1.1t04526.1	1094	1282	exon	orange1.1t04526.1	Disease resistance protein	8.76	75.01	21.21
Csi407	orange1.1t05305.1	221	409	exon	orange1.1t05305.1	Pentatricopeptide repeat-containing protein	32.12	6.12	10.83

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Female cone	Male cone
Gbi001	PUT-169a-Ginkgo_biloba-10197	10	198	exon	PUT-169a-Ginkgo_biloba-10197	Unknown protein	49.27	36.76	50.48
Gbi002	PUT-169a-Ginkgo_biloba-1465	11	220	exon	PUT-169a-Ginkgo_biloba-1465	Unknown protein	440.08	377.57	634.98
Gbi003	PUT-169a-Ginkgo_biloba-1465	263	451	exon	PUT-169a-Ginkgo_biloba-1465	Unknown protein	34.72	36.42	33.17
Gbi004	PUT-169a-Ginkgo_biloba-1620	32	304	exon	PUT-169a-Ginkgo_biloba-1620	Unknown protein	38.35	31.95	25.6
Gbi005	PUT-169a-Ginkgo_biloba-1844	183	623	exon	PUT-169a-Ginkgo_biloba-1844	Unknown protein	3143.05	1076.36	3405.29
Gbi006	PUT-169a-Ginkgo_biloba-2530	32	220	exon	PUT-169a-Ginkgo_biloba-2530	Unknown protein	109.44	94.48	147.12
Gbi007	PUT-169a-Ginkgo_biloba-2803	18	206	exon	PUT-169a-Ginkgo_biloba-2803	TIR-NBS-LRR resistance protein	280.71	245.99	205.17
Gbi008	PUT-169a-Ginkgo_biloba-3320	20	208	exon	PUT-169a-Ginkgo_biloba-3320	Suppressor of gene silencing 3 (SGS3)	46.29	42.94	34.98
Gbi009	PUT-169a-Ginkgo_biloba-3504	356	607	exon	PUT-169a-Ginkgo_biloba-3504	Unknown protein	546.55	267.63	115.75
Gbi010	PUT-169a-Ginkgo_biloba-3703	117	326	exon	PUT-169a-Ginkgo_biloba-3703	Unknown protein	1169.47	797.39	359.5
Gbi011	PUT-169a-Ginkgo_biloba-3703	390	641	exon	PUT-169a-Ginkgo_biloba-3703	Unknown protein	16.2	14.09	12.62
Gbi012	PUT-169a-Ginkgo_biloba-3713	321	509	exon	PUT-169a-Ginkgo_biloba-3713	"ATP synthase subunit b, chloroplastic"	11.24	5.15	7.93
Gbi013	PUT-169a-Ginkgo_biloba-4243	218	511	exon	PUT-169a-Ginkgo_biloba-4243	Unknown protein	1573.51	637.98	1226.32
Gbi014	PUT-169a-Ginkgo_biloba-448	1129	1548	exon	PUT-169a-Ginkgo_biloba-448	Disease resistance protein (TMV resistance protein N)	3127.51	2324.49	2156.97
Gbi015	PUT-169a-Ginkgo_biloba-4950	251	439	exon	PUT-169a-Ginkgo_biloba-4950	NADH-plastoquinone oxidoreductase subunit 4 fragment	4.96	5.15	7.93
Gbi016	PUT-169a-Ginkgo_biloba-5240	234	485	exon	PUT-169a-Ginkgo_biloba-5240	Unknown protein	992.25	836.9	532.21
Gbi017	PUT-169a-Ginkgo_biloba-575	273	461	exon	PUT-169a-Ginkgo_biloba-575	AUXIN SIGNALING F-BOX 2	0	0.34	9.01
Gbi018	PUT-169a-Ginkgo_biloba-6343	17	268	exon	PUT-169a-Ginkgo_biloba-6343	Unknown protein	1234.94	794.99	1031.97
Gbi019	PUT-169a-Ginkgo_biloba-7028	292	480	exon	PUT-169a-Ginkgo_biloba-7028	ATP synthase CF0 B chain fragment	11.24	5.15	7.93
Gbi020	PUT-169a-Ginkgo_biloba-8226	32	514	exon	PUT-169a-Ginkgo_biloba-8226	Unknown protein	1664.1	2748.44	2662.5
Gbi021	PUT-169a-Ginkgo_biloba-9037	22	588	exon	PUT-169a-Ginkgo_biloba-9037	"LRR receptor-like kinase, RLP"	7556.42	7382.64	3274.76
Gbi022	PUT-169a-Ginkgo_biloba-9104	151	549	exon	PUT-169a-Ginkgo_biloba-9104	Unknown protein	174.25	142.23	146.39
Gbi023	PUT-169a-Ginkgo_biloba-9120	201	389	exon	PUT-169a-Ginkgo_biloba-9120	Unknown protein	4.3	7.21	5.41
Gbi024	PUT-169a-Ginkgo_biloba-9378	337	588	exon	PUT-169a-Ginkgo_biloba-9378	Unknown protein	318.41	323.97	223.2
Gbi025	PUT-169a-Ginkgo_biloba-9379	210	650	exon	PUT-169a-Ginkgo_biloba-9379	Unknown protein	300.55	293.05	180.29
Gbi026	PUT-169a-Ginkgo_biloba-9595	249	563	exon	PUT-169a-Ginkgo_biloba-9595	Unknown protein	242.03	105.47	293.51
Gbi027	PUT-169a-Ginkgo_biloba-9793	51	357	exon	PUT-169a-Ginkgo_biloba-9793	Unknown protein	75.05	52.56	53

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower	Fruit
Mac001	chr1	6618002	6618232	exon	GSMUA_Achr1G08690_001	Disease resistance protein (NBS-LRR)	3.28	7.74	13.92
Mac002	chr1	11762220	11762450	exon	GSMUA_Achr1G15683_001	NA	0.36	18.52	0
Mac003	chr10	21185001	21185189	exon	GSMUA_Achr10G12000_001	AUXIN SIGNALING F-BOX 2	9.1	6.91	6.63
Mac004	chr11	3699316	3699589	intergenic	NA	NA	61064.29	378.19	2149.44
Mac005	chr11	5825928	5826179	exon	GSMUA_Achr11G07440_001	NA	2.55	0.55	13.92
Mac006	chr11	22866957	22867145	intergenic	NA	NA	185.35	115.83	210.5
Mac007	chr2	9261493	9261681	exon	GSMUA_Achr2G03610_001	NA	6.19	1.11	11.93
Mac008	chr2	18416593	18416928	exon	GSMUA_Achr2G17960_001	MYB domain protein	501.43	20.18	197.91
Mac009	chr3	5529946	5530260	exon	GSMUA_Achr3G07950_001	MYB domain protein	18.57	2.21	6.85
Mac010	chr3	24568922	24569110	exon	GSMUA_Achr3G23850_001	NA	4.73	1.38	2.43
Mac011	chr4	20826964	20827152	intergenic	NA	NA	0.73	103.39	4.42
Mac012	chr4	20832370	20832558	exon and intron	GSMUA_Achr4G20060_001	Multidrug resistance protein ABC transporter family	0.73	48.66	2.43
Mac013	chr5	338754	338942	exon and intron	GSMUA_Achr5G00590_001	Auxin response factor 18	9.83	0	0.44
Mac014	chr5	20274225	20274413	intergenic	NA	NA	30.59	17.97	33.13
Mac015	chr5	27324670	27324858	exon	GSMUA_Achr5G26580_001	Auxin response factor 6	6.19	1.94	0.22
Mac016	chr6	5365859	5366173	exon	GSMUA_Achr6G08000_001	F-box family protein	10.92	5.25	4.86
Mac017	chr6	15272210	15272440	exon and intron	GSMUA_Achr6G20580_001	AUXIN SIGNALING F-BOX 2	19.3	25.16	15.02
Mac018	chr6	31600127	31600441	exon	GSMUA_Achr6G32050_001	Cc-nbs-lrr resistance protein	36.78	8.02	23.86
Mac019	chr6	33585361	33585591	exon and intron	GSMUA_Achr6G35350_001	Unknown protein	293.87	142.1	325.81
Mac020	chr7	24189710	24189940	exon	GSMUA_Achr7G21400_001	Disease resistance protein (NBS-LRR)	4.01	8.29	26.73
Mac021	chr8	5392272	5392460	intergenic	NA	NA	5.83	0.55	2.87
Mac022	chr8	5397510	5397698	intergenic	NA	NA	21.12	8.02	8.17
Mac023	chr9	880608	880796	exon	GSMUA_Achr9G01140_001	AUXIN SIGNALING F-BOX 2	7.28	27.92	14.8
Mac024	chr9	11842244	11842665	exon	GSMUA_Achr9G17310_001	Disease resistance protein (NBS-LRR)	9.1	7.46	21.21
Mac025	chr9	26898930	26899118	exon and intron	GSMUA_Achr9G21750_001	Unknown protein	5.46	4.98	6.85
Mac026	chr9	28047958	28048272	exon	GSMUA_Achr9G23050_001	Cc-nbs-lrr resistance protein	20.76	14.38	22.97
Mac027	GSMUA_Achr3T22290_001	263	472	exon	GSMUA_Achr3T22290_001	Cc-nbs-lrr resistance protein	28.77	12.16	28.72
Mac028	GSMUA_AchrUn_randomT10710_001	1389	1577	exon	GSMUA_AchrUn_randomT10710_001	Transport inhibitor response1 (TIR1/Auxin F-box)	6.55	9.68	4.86
Mac029	GSMUA_AchrUn_randomT26110_001	263	667	exon	GSMUA_AchrUn_randomT26110_001	Disease resistance protein (NBS-LRR)	37.51	22.95	38.66

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower	Fruit
Mgu001	mgv1a001090m	1835	2044	exon	mgv1a001090m	Disease resistance protein (NB-ARC/LRR)	25.43	1.06	7.24
Mgu002	mgv1a009417m	316	504	exon	mgv1a009417m	Disease resistance protein	4.75	0.26	0.26
Mgu003	mgv1a018432m	1424	1612	exon	mgv1a018432m	Disease resistance protein	10.85	2.38	0
Mgu004	mgv1a019841m	707	895	exon	mgv1a019841m	Cc-nbs-lrr resistance protein	10.17	2.11	0.26
Mgu005	mgv1a024460m	79	267	exon	mgv1a024460m	Unknown protein	6.78	1.06	0.78
Mgu006	mgv1a026954m	3176	3364	exon	mgv1a026954m	Disease resistance protein (NB-ARC/LRR)	7.8	1.32	0.52
Mgu007	scaffold_106	805690	805878	exon and intron	mgv1a017163m.g	NA	201.78	866.63	14.74
Mgu008	scaffold_109	246350	246622	intergenic	NA	NA	189.91	51.21	34.66
Mgu009	scaffold_109	259601	259894	intergenic	NA	NA	1568.09	307.27	351.76
Mgu010	scaffold_14	65172	65360	intergenic	NA	NA	30.18	1.85	0.52
Mgu011	scaffold_14	96783	96971	intergenic	NA	NA	3.39	0	0
Mgu012	scaffold_14	137873	138061	intergenic	NA	NA	31.2	1.85	0.52
Mgu013	scaffold_14	269242	269430	intergenic	NA	NA	4.07	0.26	0.26
Mgu014	scaffold_14	287883	288071	intergenic	NA	NA	15.6	0.53	0.26
Mgu015	scaffold_14	373515	373703	intergenic	NA	NA	15.6	0.53	0.26
Mgu016	scaffold_150	393489	393677	exon	mgv1a018316m.g	Disease resistance protein	9.5	0.53	0
Mgu017	scaffold_17	1952009	1952281	intergenic	NA	NA	848.48	123.01	61.56
Mgu018	scaffold_17	1955369	1955557	intergenic	NA	NA	7.12	0.53	0
Mgu019	scaffold_17	1956949	1957137	intergenic	NA	NA	94.61	6.34	1.55
Mgu020	scaffold_181	259096	259284	intergenic	NA	NA	102.75	17.16	0.78
Mgu021	scaffold_21	472171	472359	intergenic	NA	NA	3.73	0.79	0.78
Mgu022	scaffold_270	124932	125141	exon	mgv1a003473m.g	F-box family protein (LRR domain-containing)	34.93	2.11	1.55
Mgu023	scaffold_29	472562	472750	intergenic	NA	NA	4.75	0.26	0
Mgu024	scaffold_32	97085	97273	intergenic	NA	TAS4	716.9	107.97	0
Mgu025	scaffold_32	1141512	1141700	exon and intron	mgv1a018270m.g	Disease resistance protein	17.63	2.64	0.78
Mgu026	scaffold_40	40715	40903	intergenic	NA	NA	6.1	6.86	0
Mgu027	scaffold_483	5426	5635	exon	mgv1a023806m.g	Disease resistance protein (NB-ARC/LRR)	12.21	0.79	5.43
Mgu028	scaffold_57	1399036	1399224	exon	mgv1a024774m.g	Cc-nbs-lrr resistance protein	17.3	1.58	0
Mgu029	scaffold_65	901040	901228	intergenic	NA	NA	95.29	6.6	1.81
Mgu030	scaffold_65	941048	941278	intergenic	NA	NA	210.25	16.89	11.64
Mgu031	scaffold_68	999390	999578	exon	mgv1a000545m.g	ARGONAUTE 1	7.8	0.79	6.72
Mgu032	scaffold_7	3502705	3502893	exon	mgv1a026162m.g	Disease resistance protein	15.94	1.32	0.52
Mgu033	scaffold_7	3582082	3582270	exon	mgv1a021514m.g	Disease resistance protein	25.77	6.6	0.78
Mgu034	scaffold_7	3589302	3589490	exon	mgv1a001107m.g	Disease resistance protein	22.04	6.6	0.52
Mgu035	scaffold_8	1032411	1032620	intergenic	NA	NA	15.6	1.06	6.98
Mgu036	scaffold_9	1174996	1175184	intergenic	NA	NA	11.53	5.28	0.26
Mgu037	scaffold_90	499039	499227	intergenic	NA	NA	828.47	24.29	100.87
Mgu038	scaffold_96	326353	326562	exon	mgv1a025955m.g	Disease resistance protein (NB-ARC/LRR)	16.96	1.06	5.17
Mgu039	scaffold_96	440524	440712	intergenic	NA	NA	10.85	7.66	1.03
Mgu040	scaffold_96	545498	545686	exon	mgv1a001240m.g	Disease resistance protein	32.89	0.53	1.03

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower	Pod
Nta001	NbS00001268g0003.1	195	383	exon	NbS00001268g0003.1	NA	2.58	15.98	7.21
Nta002	NbS00001880g0003.1	2664	2852	exon	NbS00001880g0003.1	Helicase (DEAD box ATP dependent RNA helicase)	67.48	8.11	62.28
Nta003	NbS00002969g0004.1	1459	1689	exon	NbS00002969g0004.1	NA	1.29	8.6	41.96
Nta004	NbS00003586g0002.1	807	1058	exon	NbS00003586g0002.1	NA	1362.57	110.35	1368.86
Nta005	NbS00007454g0001.1	50	238	exon	NbS00007454g0001.1	NA	0.43	0.49	33.43
Nta006	NbS00018913g0115.1	467	655	exon	NbS00018913g0115.1	NA	1.29	4.67	5.24
Nta007	NbS00022154g0003.1	75	263	exon	NbS00022154g0003.1	NA	9.03	12.04	17.7
Nta008	NbS00025322g0006.1	6	194	exon	NbS00025322g0006.1	NA	2.58	18.43	1.31
Nta009	NbS00028065g0011.1	991	1179	exon	NbS00028065g0011.1	NA	12.89	9.34	6.56
Nta010	NbS00032054g0003.1	1540	1728	exon	NbS00032054g0003.1	NA	9.46	6.64	31.47
Nta011	NbS00040351g0004.1	1082	1270	exon	NbS00040351g0004.1	NA	2.15	1.97	6.56
Nta012	NbS00043675g0005.1	1570	1800	exon	NbS00043675g0005.1	NA	1.29	9.09	41.96
Nta013	NbS00046013g0008.1	2064	2252	exon	NbS00046013g0008.1	NA	248.01	60.46	111.45
Nta014	Niben044Scf00001223	85308	85517	exon	NbS00001223g0007.1	Cc-nbs-lrr resistance protein	13.75	1.47	0.66
Nta015	Niben044Scf00003175	149515	149703	intergenic	NA	NA	15.04	0	2.62
Nta016	Niben044Scf00003803	2990	3178	exon	NbS00003803g0002.1	Pectinesterase/pectinesterase inhibitor PPE8B	0	0	200.61
Nta017	Niben044Scf00005733	34319	34507	exon and intron	NbS00005733g0010.1	AT2G45380 protein Fragment	28.8	7.62	15.08
Nta018	Niben044Scf00006732	45822	46010	intergenic	NA	TAS4	0	109.37	0
Nta019	Niben044Scf00008803	42968	43240	exon	NbS00008803g0010.1	Cc-nbs-lrr resistance protein (R1)	12.89	1.23	3.28
Nta020	Niben044Scf00010886	238358	238546	intergenic	NA	NA	9.03	0	0.66
Nta021	Niben044Scf00011373	40277	40549	exon	NbS00011373g0014.1	AUXIN SIGNALING F-BOX 3	10.32	14.5	38.02
Nta022	Niben044Scf00016215	24019	24207	exon and intron	NbS00016215g0011.1	AT2G45380 protein Fragment	30.09	7.86	14.42
Nta023	Niben044Scf00017755	38372	38581	intergenic	NA	NA	658.93	80.61	548.07
Nta024	Niben044Scf00022154	3444	3632	exon and intron	NbS00022154g0003.1	Dicer-like protein 2	1.72	3.93	8.52
Nta025	Niben044Scf00028709	38351	38539	intergenic	NA	TAS3	30.09	177.45	175.04
Nta026	Niben044Scf00031321	7375	7563	intron	NbS00031321g0004.1	NA	254.89	26.3	165.86
Nta027	Niben044Scf00032054	24448	24657	exon and intron	NbS00032054g0003.1	AUXIN SIGNALING F-BOX 3	10.32	14.5	38.02
Nta028	Niben044Scf00049233	1012	1200	intergenic	NA	TAS4	0	69.06	0

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Shoot	Root	Seed
Oru001	c035500057.Contig1	9590	9778	intron	9311_GLEAN_10040332	Unknown protein	0	0	3.80
Oru002	c069400083.Contig1	16225	16413	intergenic	NA	NA	1.98	1.15	0.28
Oru003	c087900101.Contig1	8936	9166	exon	LOC_Os01g24460	nuclear factor Y, subunit C4	0	0	556.43
Oru004	c089400136.Contig1	5117	5326	intron	9311_GLEAN_10032517	Neutral invertase	5.12	135.45	20.50
Oru005	c092900094.Contig1	19290	19604	exon	LOC_Os12g42390	NA	723.32	198.33	147.36
Oru006	c107200091.Contig1	10723	10911	intron	LOC_Os09g17730	proton pump interactor 1	8.91	5.75	2.69
Oru007	c112400121.Contig1	11112	11342	intergenic	NA	TAS3b-1	43.25	0.33	23.18
Oru008	c117900058.Contig1	797	1006	intergenic	NA	TAS3b-2	0.58	1.31	2.78
Oru009	c126800058.Contig1	4103	4291	exon	LOC_Os08g30910	SU(VAR)3-9 homolog 5	5.86	0.16	0
Oru010	c146300118.Contig1	6913	7101	intergenic	NA	NA	94.58	70.10	14.65
Oru011	c157600025.Contig1	5234	5443	exon	LOC_Os12g38590	pumilio-family RNA binding repeat containing protein, expressed	0	0	9.46
Oru012	c163200007.Contig1	6732	6920	exon	LOC_Os08g37350	Ubiquitin carboxyl-terminal hydrolase	0	0	1.85
Oru013	contig_1320_000000573	5486	5758	exon and intron	9311_GLEAN_10005852	Phosphoinositide phosphatase family protein	0	0	857.65

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Shoot	Root	Seed
Oru24-001	c005600451.Contig1	7540	7755	intergenic	NA	NA	16.01	14.28	0
Oru24-002	c019500008.Contig1	11194	11697	intergenic	NA	NA	168.04	142.51	0
Oru24-003	c065000022.Contig1	25399	25662	intergenic	NA	NA	12.3	13.46	0.09
Oru24-004	c116300161.Contig1	28368	28799	intergenic	NA	NA	72.46	55.16	0.09
Oru24-005	c121800395.Contig1	10841	11056	intergenic	NA	NA	32.68	22.66	0.09
Oru24-006	c129900032.Contig1	14844	15251	intergenic	NA	NA	43.58	33.98	0
Oru24-007	contig_1320_000000539	33963	34226	intergenic	NA	NA	8.75	6.4	0.09

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Shoot
Osai001	9311_chr01	782641	782871	exon	9311_GLEAN_10035530	Unknown protein	32.03
Osai002	9311_chr01	11616324	11616554	exon	9311_GLEAN_10036870	Unknown protein	24.88
Osai003	9311_chr02	21630643	21630831	intron	9311_GLEAN_10025697	NAD(P)-binding Rossmann-fold superfamily protein (LOC_Os02g35039)	10.58
Osai004	9311_chr02	24595542	24595793	intergenic	NA	TAS3b-1	561.13
Osai005	9311_chr03	11988276	11988527	intron	9311_GLEAN_10032517	Neutral invertase	292.29
Osai006	9311_chr03	12009567	12009818	intergenic	9311_GLEAN_10032519	Unknown protein	237.66
Osai007	9311_chr04	25233749	25233958	intron	9311_GLEAN_10029447	TAS3b-2	140.14
Osai008	9311_chr05	2055267	2055497	intergenic	NA	TAS3a-2	142.71
Osai009	9311_chr05	23220960	23221169	exon	9311_GLEAN_10016853	laccase 17	11.73
Osai010	9311_chr05	23245801	23245989	exon and intron	9311_GLEAN_10016855	laccase 17	4.58
Osai011	9311_chr06	1185568	1185756	exon and intron	9311_GLEAN_10020772	Protease (Ulp1 family)	18.02
Osai012	9311_chr07	21543565	21543753	exon	9311_GLEAN_10011347	Unknown protein	14.59
Osai013	9311_chr09	16263453	16263641	intergenic	NA	NA	31.17
Osai014	9311_chr12	7005601	7005789	intergenic	NA	NA	6.29
Osai015	9311_chr12	24938753	24938941	exon	9311_GLEAN_10009240	Unknown protein	372.94
Osai016	9311_chr12	24944248	24944520	exon	9311_GLEAN_10009241	Unknown protein	2145.27

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Shoot
Osaj001	Chr1	10960853	10961041	intergenic	NA	NA	8.42
Osaj002	Chr12	26345093	26345428	exon	LOC_Os12g42390	Expressed gene	572.01
Osaj003	Chr2	24021977	24022186	intergenic	NA	TAS3b-1	281.37
Osaj004	Chr3	4494918	4495106	intergenic	NA	NA	12.07
Osaj005	Chr3	11276257	11276466	intergenic	NA	NA	51.39
Osaj006	Chr4	24905399	24905587	intron	LOC_Os04g42050	TAS3b-2	46.61
Osaj007	Chr5	1900912	1901142	intergenic	NA	TAS3a-2	28.08
Osaj008	LOC_Os03g02240.1	2214	2402	exon	LOC_Os03g02240.1	Duplicated homeodomain-like superfamily protein	2.53

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Protonemata	YoungGametophores	GamteophoresSporophytes
Ppt001	scaffold_13	2972368	2972620	intergenic	NA	NA	4266.69	909.54	0
Ppt002	scaffold_2	4440113	4440322	intergenic	NA	NA	573.06	693.64	622.46
Ppt003	scaffold_37	2031168	2031356	intergenic	NA	NA	4459.45	748.76	0
Ppt004	scaffold_61	113226	113477	intergenic	NA	NA	7725.89	20400.38	14555.28

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Xylem	Mechanically treated xylem
Ptc001	Chr01	2133319	2133591	exon	Potri.001G028700	TIR-NBS-LRR resistance protein	22.58	13.98	19.78
Ptc002	Chr01	2146111	2146299	exon	Potri.001G029300	Disease resistance protein (NBS-LRR)	8	3.29	3.77
Ptc003	Chr01	9950874	9951146	exon	Potri.001G122800	GRAS family transcription factor	0.57	29.6	13.66
Ptc004	Chr01	14215732	14216088	exon	Potri.001G168900	Unknown protein	349.48	97.01	3.77
Ptc005	Chr01	14331636	14331824	exon	Potri.001G169600	MYB domain protein	76.01	9.87	9.42
Ptc006	Chr01	26653920	26654108	exon	Potri.001G257000	Sulfite reductase [NADPH] hemoprotein beta-component	2.29	3.29	3.3
Ptc007	Chr01	32728077	32728370	exon	Potri.001G323100	AUXIN SIGNALING F-BOX	222.89	405.03	444.68
Ptc008	Chr01	36830980	36831210	exon	Potri.001G358500	Auxin response factor 3	23.43	0.55	0.47
Ptc009	Chr01	39574476	39574727	exon	Potri.001G379700	Disease resistance protein (NBS-LRR)	4.86	6.58	4.71
Ptc010	Chr01	45600685	45600957	exon	Potri.001G427700	Cc-nbs-lrr resistance protein	58.87	49.6	42.87
Ptc011	Chr01	46430847	46431035	exon	Potri.001G433500	Cc-nbs-lrr resistance protein	6.86	4.11	2.83
Ptc012	Chr01	46492846	46493034	exon	Potri.001G434000	Cc-nbs-lrr resistance protein	2.57	1.1	1.88
Ptc013	Chr02	7311568	7311756	exon	Potri.002G101200	"Early nodulin 20, putative"	0	143.87	15.54
Ptc014	Chr02	11616111	11616567	exon	Potri.002G154100	NAC domain protein	73.44	276.51	185.12
Ptc015	Chr02	14275043	14275240	exon	Potri.002G182400	NAC domain protein	521.23	954.76	732.96
Ptc016	Chr02	22898688	22898918	exon	Potri.002G235400	basic helix-loop-helix (bHLH) protein	0.57	94	125.77
Ptc017	Chr02	22899003	22899233	exon	Potri.002G235400	basic helix-loop-helix (bHLH) protein	0.29	101.12	126.24
Ptc018	Chr03	9325160	9325390	exon	Potri.003G064600	MYB domain protein	2.29	63.58	51.82
Ptc019	Chr03	10222248	10222436	intron	Potri.003G073400	Unknown protein	24	3.29	0.94
Ptc020	Chr03	13428162	13428434	exon and intron	Potri.003G110800	GRAS family transcription factor	0.57	13.98	5.18
Ptc021	Chr03	16425583	16425855	exon	Potri.003G149800	Disease resistance protein	20.57	58.1	55.11
Ptc022	Chr03	16444227	16444415	exon	Potri.003G150200	Disease resistance protein	4.86	10.96	11.78
Ptc023	Chr03	18164627	18164899	exon	Potri.003G171700	Unknown protein	418.64	408.05	328.33
Ptc024	Chr03	20234578	20234766	exon	Potri.003G199600	Cc-nbs-lrr resistance protein	0.86	7.67	5.18
Ptc025	Chr04	19006328	19006516	exon	Potri.004G170700	Disease resistance protein (NB-ARC/LRR)	9.43	4.11	9.42
Ptc026	Chr05	780326	780640	exon	Potri.005G010500	Cc-nbs-lrr resistance protein	3292.25	1545.87	1786.71
Ptc027	Chr05	781367	781576	exon	Potri.005G010500	Cc-nbs-lrr resistance protein	44.86	8.5	14.13
Ptc028	Chr05	2819668	2819982	exon	Potri.005G038400	Pentatricopeptide repeat-containing protein	42.58	18.63	23.08
Ptc029	Chr05	2820131	2820362	exon	Potri.005G038400	Pentatricopeptide repeat-containing protein	28	10.69	11.78
Ptc030	Chr05	3018735	3018923	exon	Potri.005G041300	Disease resistance protein (NB-ARC/LRR)	10	7.67	5.18
Ptc031	Chr05	3018988	3019176	exon	Potri.005G041300	Disease resistance protein (NB-ARC/LRR)	22.86	17.81	18.37
Ptc032	Chr05	3138794	3138982	exon	Potri.005G042400	Cc-nbs-lrr resistance protein	10	7.67	5.18
Ptc033	Chr05	3139047	3139235	exon	Potri.005G042400	Cc-nbs-lrr resistance protein	23.15	17.81	18.37
Ptc034	Chr05	3303705	3303935	exon	Potri.005G045000	Pentatricopeptide repeat-containing protein	19.72	12.33	15.54
Ptc035	Chr05	3372735	3373070	exon	Potri.005G046000	Pentatricopeptide repeat-containing protein	60.3	35.35	36.74
Ptc036	Chr05	3379010	3379282	exon	Potri.005G046100	Pentatricopeptide repeat-containing protein	45.15	13.98	11.78
Ptc037	Chr05	3382465	3382653	exon	Potri.005G046200	Pentatricopeptide repeat-containing protein	20.57	8.22	6.12
Ptc038	Chr05	3612345	3612764	exon	Potri.005G050100	Pentatricopeptide repeat-containing protein	150.02	88.24	72.54
Ptc039	Chr05	3617304	3617534	exon	Potri.005G050200	Pentatricopeptide repeat-containing protein	262.04	103.59	114.94
Ptc040	Chr05	3617705	3617956	exon	Potri.005G050200	Pentatricopeptide repeat-containing protein	40.29	27.68	20.73
Ptc041	Chr05	3621955	3622249	exon	Potri.005G050300	Pentatricopeptide repeat-containing protein	133.74	46.04	38.63
Ptc042	Chr05	3626475	3626768	exon	Potri.005G050400	Pentatricopeptide repeat-containing protein	45.15	18.91	20.73
Ptc043	Chr05	3629967	3630155	exon	Potri.005G050500	Pentatricopeptide repeat-containing protein	163.17	49.88	66.89
Ptc044	Chr05	3630177	3630407	exon	Potri.005G050500	Pentatricopeptide repeat-containing protein	31.72	12.33	11.78
Ptc045	Chr05	9285821	9286051	exon	Potri.005G119800	Disease resistance protein (RPP13-like)	6	1.64	0.94
Ptc046	Chr06	535094	535345	exon	Potri.006G007900	Unknown protein	394.06	498.76	1598.29
Ptc047	Chr06	535397	535585	exon	Potri.006G007900	Unknown protein	45.44	21.65	81.02
Ptc048	Chr06	23378467	23378802	exon	Potri.006G221200	MYB domain protein	99.44	14.25	16.02
Ptc049	Chr06	23403050	23403238	exon	Potri.006G221500	MYB domain protein	4.86	0	0
Ptc050	Chr06	25126720	25126908	exon	Potri.006G243200	GTP binding protein	4.86	3.56	0.47
Ptc051	Chr07	14931538	14931747	exon	Potri.007G137100	Disease resistance protein (NBS-LRR)	114.88	3.29	1.88
Ptc052	Chr08	1652795	1653151	exon	Potri.008G030000	TIR-NBS-LRR resistance protein	40.86	1425.56	1708.52
Ptc053	Chr08	6460068	6460319	exon	Potri.008G101700	TAS3	3.71	37.54	52.29
Ptc054	Chr08	16648189	16648377	exon	Potri.008G212200	Disease resistance protein (NBS-LRR)	17.15	3.84	3.77
Ptc055	Chr08	18452832	18453020	exon	Potri.008G220200	TIR-NBS-LRR resistance protein	24.29	0.27	0.47
Ptc056	Chr10	16237181	16237369	exon	Potri.010G154800	Unknown protein	52.29	38.64	4.71
Ptc057	Chr10	21293740	21294327	exon	Potri.010G231200	TIR-NBS-LRR resistance protein	3653.45	1917.74	1244.53
Ptc058	Chr11	11144409	11144681	exon	Potri.011G091900	Auxin response factor 3	71.15	1.1	0.94
Ptc059	Chr11	14898821	14899009	exon	Potri.011G124000	Disease resistance protein (NBS-LRR)	2	3.56	2.83
Ptc060	Chr11	14899034	14899222	exon	Potri.011G124000	Disease resistance protein (NBS-LRR)	8	5.48	3.3
Ptc061	Chr11	15232828	15233101	exon	Potri.011G127300	Disease resistance protein (NBS-LRR)	37.72	20.83	30.62
Ptc062	Chr12	10675124	10675354	exon	Potri.012G080400	MYB domain protein	1185.33	2.19	2.83
Ptc063	Chr13	1069006	1069194	exon	Potri.013G016400	Cc-nbs-lrr resistance protein	3.71	0.82	2.83
Ptc064	Chr13	2538521	2538856	exon	Potri.013G037300	TIR-NBS-LRR resistance protein	18.86	158.4	101.75
Ptc065	Chr13	6935582	6935770	exon	Potri.013G079700	No apical meristem (NAM) protein	51.44	32.61	24.97
Ptc066	Chr13	14792596	14792784	exon	Potri.013G140000	Unknown protein	0	0.82	6.59
Ptc067	Chr13	14841697	14841885	intergenic	NA	NA	0	1.1	3.3
Ptc068	Chr14	1240400	1240588	exon	Potri.014G012000	Disease resistance protein (NBS-LRR)	10.86	2.47	2.36
Ptc069	Chr14	2929551	2929739	exon	Potri.014G035800	Nucleobase-ascorbate transporter	8.57	1.1	0.47
Ptc070	Chr14	4649605	4649919	exon	Potri.014G060200	GRAS family transcription factor	0.57	38.91	36.74
Ptc071	Chr14	4683262	4683660	exon	Potri.014G060500	GRAS family transcription factor	0.29	26.86	24.02
Ptc072	Chr14	5766810	5767255	exon and intron	Potri.014G071000	Unknown protein	1288.49	1942.95	2987.91
Ptc073	Chr14	6150395	6150667	exon	Potri.014G075900	NAC domain protein	12.86	33.16	22.14
Ptc074	Chr14	6150812	6151000	exon	Potri.014G075900	NAC domain protein	14.86	26.86	15.07
Ptc075	Chr14	6163359	6163589	exon	Potri.014G076100	NAC domain protein	144.88	186.62	137.55
Ptc076	Chr14	6163734	6163922	exon and intron	Potri.014G076100	NAC domain protein	12.86	33.16	22.14
Ptc077	Chr14	8494017	8494205	exon	Potri.014G108100	NAC domain protein	5.72	11.51	11.31
Ptc078	Chr14	8495094	8495282	exon	Potri.014G108100	NAC domain protein	81.16	92.35	126.24
Ptc079	Chr14	11387369	11387830	exon	Potri.014G148900	basic helix-loop-helix (bHLH) protein	2.29	155.38	232.7
Ptc080	Chr15	10033959	10034147	exon	Potri.015G075600	MYB domain protein	61.72	1.37	0.47
Ptc081	Chr16	691876	692064	intergenic	NA	NA	52.29	38.64	4.71
Ptc082	Chr16	692171	692359	intergenic	NA	NA	70.3	44.67	8.95
Ptc083	Chr17	1254833	1255021	exon	Potri.017G015200	Cc-nbs-lrr resistance protein	4.86	3.01	2.83
Ptc084	Chr17	1327249	1327479	exon	Potri.017G015600	Disease resistance protein (NB-ARC/LRR)	18.86	3.56	8.95
Ptc085	Chr17	5744808	5745017	exon	Potri.017G061600	AUXIN SIGNALING F-BOX 2	195.75	354.06	373.08
Ptc086	Chr17	14316639	14317080	exon	Potri.017G133600	Disease resistance protein (NBS-LRR)	65.15	148.8	94.68
Ptc087	Chr17	14492575	14492763	intergenic	NA	NA	3.71	15.07	7.07
Ptc088	Chr17	14518607	14518837	exon	Potri.017G136400	Disease resistance protein (NBS-LRR)	19.72	33.98	26.38
Ptc089	Chr17	14537539	14537727	exon	Potri.017G136700	Disease resistance protein (NBS-LRR)	3.71	15.07	7.07
Ptc090	Chr17	14546312	14546500	exon	Potri.017G136900	Disease resistance protein (NBS-LRR)	22.86	43.02	29.68
Ptc091	Chr17	14659738	14660181	exon	Potri.017G138100	Disease resistance protein (NB-ARC/LRR)	14.29	28.5	21.67
Ptc092	Chr18	1069387	1069575	exon	Potri.018G013800	CONSTANS-like protein	0.29	9.04	5.18
Ptc093	Chr18	3054462	3054650	exon	Potri.018G037000	GTP binding protein	15.43	21.1	3.77
Ptc094	Chr18	3055013	3055201	exon	Potri.018G037000	GTP binding protein	40.01	52.89	10.83
Ptc095	Chr18	10744112	10744300	exon	Potri.018G080500	Disease resistance protein (NBS-LRR)	3.71	15.07	6.59
Ptc096	Chr18	15533108	15533358	exon	Potri.018G135600	Disease resistance protein (NBS-LRR)	151.45	352.14	406.99
Ptc097	Chr18	15621803	15622117	exon	Potri.018G136300	Disease resistance protein (NBS-LRR)	59.72	435.18	405.58
Ptc098	Chr18	15638187	15638375	intron	Potri.018G136500	Disease resistance protein (NBS-LRR)	13.43	76.46	58.41
Ptc099	Chr18	15638480	15638815	exon	Potri.018G136500	Disease resistance protein (NBS-LRR)	68.01	463.13	420.65
Ptc100	Chr18	15659909	15660223	exon	Potri.018G136700	Disease resistance protein (NBS-LRR)	53.15	69.33	96.57
Ptc101	Chr18	15739059	15739247	exon	Potri.018G137900	Disease resistance protein (NBS-LRR)	15.15	3.29	2.36
Ptc102	Chr18	15860956	15861207	exon	Potri.018G138500	Disease resistance protein (NBS-LRR)	10.29	10.41	5.18
Ptc103	Chr19	315264	315452	exon	Potri.019G002800	Disease resistance protein (NBS-LRR)	15.43	46.86	21.67
Ptc104	Chr19	10148749	10148937	exon	Potri.019G068200	TIR-NBS-LRR resistance protein	5.14	7.4	4.24
Ptc105	Chr19	12790839	12791048	intron	Potri.019G097500	TIR-NBS-LRR resistance protein	15.15	14.25	10.83
Ptc106	Chr19	12965049	12965237	exon	Potri.019G099900	No apical meristem (NAM) protein	31.72	37.27	11.78
Ptc107	Chr19	15292506	15292757	intergenic	NA	NA	1177.9	693.33	952
Ptc108	Potri.001G209300.1	96	431	exon	Potri.001G209300.1	Blue copper protein (Basic)	0.29	205.53	46.16
Ptc109	Potri.001G427700.1	694	882	exon	Potri.001G427700.1	Cc-nbs-lrr resistance protein	52.01	40.01	37.68
Ptc110	Potri.005G042900.1	740	928	exon	Potri.005G042900.1	Cc-nbs-lrr resistance protein	2	8.5	7.07
Ptc111	Potri.005G046200.1	644	832	exon	Potri.005G046200.1	Pentatricopeptide repeat-containing protein	26.58	8.5	5.65
Ptc112	Potri.007G100600.1	893	1081	exon	Potri.007G100600.1	Phytoalexin-deficient 4-1 protein	21.72	18.36	2.83
Ptc113	Potri.007G100600.1	1146	1355	exon	Potri.007G100600.1	Phytoalexin-deficient 4-1 protein	25.72	11.51	1.41
Ptc114	Potri.007G142000.1	512	700	exon	Potri.007G142000.1	"LETM1 and EF-hand domain-containing protein 1, mitochondrial"	4.29	28.5	24.49
Ptc115	Potri.008G101700.1	512	805	exon	Potri.008G101700.1	Unknown protein	120.02	691.13	838.48
Ptc116	Potri.011G013800.1	479	688	exon	Potri.011G013800.1	TIR-NBS-LRR resistance protein	32.29	16.72	13.66
Ptc117	Potri.011G059300.1	1867	2055	exon	Potri.011G059300.1	Auxin response factor	5.14	4.38	3.3
Ptc118	Potri.013G141800.1	91	279	exon	Potri.013G141800.1	Photosystem I P700 chlorophyll a apoprotein A1	0.86	1.37	4.71
Ptc119	Potri.014G035700.1	570	800	exon	Potri.014G035700.1	Disease resistance protein (NBS-LRR)	24	7.67	2.36
Ptc120	Potri.014G072300.4	1446	1634	exon	Potri.014G072300.4	Cytochrome P450	2.86	0.27	0
Ptc121	Potri.014G076100.1	118	390	exon	Potri.014G076100.1	NAC domain protein	124.31	168.81	135.66
Ptc122	Potri.014G108100.1	141	413	exon	Potri.014G108100.1	NAC domain protein	108.02	125.79	146.97
Ptc123	Potri.017G138100.1	634	864	exon	Potri.017G138100.1	Cc-nbs-lrr resistance protein	13.14	20.83	18.37
Ptc124	Potri.018G080700.1	634	822	exon	Potri.018G080700.1	Disease resistance protein (NBS-LRR)	3.71	8.77	8.48
Ptc125	Potri.T015300.1	1049	1237	exon	Potri.T015300.1	Disease resistance protein (NBS-LRR)	2	6.03	8.95
Ptc126	Potri.T025300.1	88	276	exon	Potri.T025300.1	Disease resistance protein (NBS-LRR)	2.29	9.87	8.48
Ptc127	Potri.T028700.1	88	276	exon	Potri.T028700.1	Disease resistance protein (NBS-LRR)	80.01	39.74	57.47
Ptc128	Potri.T046000.1	256	444	exon	Potri.T046000.1	Disease resistance protein (NBS-LRR)	21.72	9.59	6.59
Ptc129	Potri.T105500.1	1510	1698	exon	Potri.T105500.1	Disease resistance protein (NB-ARC/LRR)	22	35.63	38.16
Ptc130	scaffold_128	91601	91874	exon	Potri.T096100	Disease resistance protein (NBS-LRR)	11.43	23.02	16.49
Ptc131	scaffold_139	53555	53785	exon	Potri.T098700	Disease resistance protein (NBS-LRR)	91.44	2.47	1.88
Ptc132	scaffold_1726	15	309	exon	Potri.T178000	Pentatricopeptide repeat-containing protein	93.44	36.72	29.68
Ptc133	scaffold_1726	4412	4600	exon and intron	Potri.T178100	Pentatricopeptide repeat-containing protein	13.72	8.22	6.59
Ptc134	scaffold_20	641747	642189	exon	Potri.T003600	Disease resistance protein (NBS-LRR)	913.86	122.77	91.86
Ptc135	scaffold_20	705806	706098	exon	Potri.T004100	Disease resistance protein (NBS-LRR)	60.58	50.7	39.1
Ptc136	scaffold_238	50074	50262	exon	Potri.T129400	TIR-NBS-LRR resistance protein	16.29	6.58	10.36
Ptc137	scaffold_25	238907	239095	exon	Potri.T013300	Disease resistance protein (NBS-LRR)	6	9.59	12.25
Ptc138	scaffold_25	267646	268023	exon	Potri.T013600	Disease resistance protein (NBS-LRR)	9.72	47.14	44.28
Ptc139	scaffold_25	289956	290144	exon	Potri.T013800	Disease resistance protein (NBS-LRR)	51.15	64.95	89.5
Ptc140	scaffold_25	319551	319983	exon	Potri.T013900	Disease resistance protein (NBS-LRR)	33.72	187.17	220.45
Ptc141	scaffold_25	353688	353918	exon	Potri.T014300	Disease resistance protein (NBS-LRR)	49.15	58.37	58.88
Ptc142	scaffold_25	375007	375278	exon	Potri.T014500	Disease resistance protein (NBS-LRR)	50.58	229.1	317.96
Ptc143	scaffold_25	388348	388642	exon	Potri.T014600	Disease resistance protein (NBS-LRR)	15.43	64.67	63.12
Ptc144	scaffold_25	403389	403767	exon	Potri.T014700	Cc-nbs-lrr resistance protein	22	106.33	94.68
Ptc145	scaffold_25	546501	546836	exon	Potri.T016200	Disease resistance protein (NBS-LRR)	136.02	139.76	99.86
Ptc146	scaffold_25	550869	551057	exon	Potri.T016200	Disease resistance protein (NBS-LRR)	32.29	34.8	26.38
Ptc147	scaffold_30	63702	63953	exon	Potri.T025000	Disease resistance protein (NBS-LRR)	8.57	14.8	13.66
Ptc148	scaffold_30	71074	71389	intergenic	NA	NA	9.43	28.23	28.73
Ptc149	scaffold_30	103939	104127	exon	Potri.T025300	Disease resistance protein (NBS-LRR)	1.14	7.4	4.71
Ptc150	scaffold_30	116157	116387	exon	Potri.T025500	Disease resistance protein (NB-ARC/LRR)	85.44	69.06	67.36
Ptc151	scaffold_30	126713	127027	exon	Potri.T025800	Disease resistance protein (NBS-LRR)	98.3	57.27	61.71
Ptc152	scaffold_30	302552	302887	exon	Potri.T026900	Disease resistance protein (NBS-LRR)	4.57	10.41	14.13
Ptc153	scaffold_30	399788	399976	exon and intron	Potri.T028000	Disease resistance protein (NB-ARC/LRR)	11.43	26.31	25.91
Ptc154	scaffold_30	450694	450903	exon	Potri.T028700	Disease resistance protein (NBS-LRR)	81.16	39.74	56.53
Ptc155	scaffold_42	81293	81481	exon	Potri.T044800	Disease resistance protein (NB-ARC/LRR)	70.58	99.2	127.18
Ptc156	scaffold_42	100315	100566	exon	Potri.T045000	Disease resistance protein (NBS-LRR)	184.6	243.35	244.01
Ptc157	scaffold_42	132895	133209	exon	Potri.T045200	Disease resistance protein (NBS-LRR)	60.3	434.36	400.4
Ptc158	scaffold_42	159149	159380	exon	Potri.T045300	Disease resistance protein (NBS-LRR)	88.87	301.99	370.25
Ptc159	scaffold_42	185054	185347	intergenic	NA	NA	54.01	390.24	366.95
Ptc160	scaffold_42	260327	260515	exon	Potri.T046000	Disease resistance protein (NBS-LRR)	22.86	9.04	6.59
Ptc161	scaffold_48	182686	182874	intron	Potri.T052400	Disease resistance protein (NBS-LRR)	30.58	14.8	21.67
Ptc162	scaffold_48	194790	195020	exon and intron	Potri.T052600	Disease resistance protein (NBS-LRR)	23.72	7.95	8.48
Ptc163	scaffold_48	226501	226816	intergenic	NA	NA	9.43	28.23	28.73
Ptc164	scaffold_48	238409	238597	exon and intron	Potri.T053000	Cc-nbs-lrr resistance protein	5.72	21.1	24.97
Ptc165	scaffold_68	17047	17235	intergenic	NA	NA	8	10.14	4.24
Ptc166	scaffold_73	91613	91801	exon	Potri.T068700	TIR-NBS-LRR resistance protein	8.57	4.11	6.12
Ptc167	scaffold_80	24731	24982	exon and intron	Potri.T073600	TIR-NBS-LRR resistance protein	29.15	5.21	3.3
Ptc168	scaffold_80	74602	74790	exon	Potri.T074000	TIR-NBS-LRR resistance protein	14	2.19	2.36
Ptc169	scaffold_80	114239	114574	exon	Potri.T074200	TIR-NBS-LRR resistance protein	13.43	16.17	21.2
Ptc170	scaffold_81	72307	72537	exon	Potri.T074600	NADH-Ubiquinone/plastoquinone (complex I) protein	0.29	2.47	9.42
Ptc171	scaffold_888	7448	7825	intergenic	NA	NA	3470.56	1.92	0.94

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Control leaf	Flower	Drought-treated leaf
Pvi001	Pavirv00054624m	649	837	exon	Pavirv00054624m	Disease resistance protein (NBS-LRR)	8.03	12.05	13.21
Pvi002	Pavirv00055642m	889	1077	exon	Pavirv00055642m	Disease resistance protein (NBS-LRR)	8.03	12.05	13.21
Pvi003	Pavirv00067923m	706	894	exon	Pavirv00067923m	Disease resistance protein (NBS-LRR)	8.03	11.69	13.21
Pvi004	Pavirv00069229m	2062	2250	exon	Pavirv00069229m	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies	3.21	2.83	9.19
Pvi005	sg0.contig01555	7414	7665	intergenic	NA	NA	0.8	55.98	0.57
Pvi006	sg0.contig02748	1546	1734	exon	Pavirv00022754m.g	MYB domain protein	8.03	1.06	14.36
Pvi007	sg0.contig06163	7999	8187	exon	Pavirv00030456m.g	cysteine protease 1	4.01	0	2.3
Pvi008	sg0.contig06685	9423	9611	intergenic	NA	NA	8.03	2.83	10.34
Pvi009	sg0.contig08160	862	1050	exon	Pavirv00069232m.g	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED	3.61	3.54	9.76
Pvi010	sg0.contig120156	845	1033	exon	Pavirv00065363m.g	NA	6.42	6.38	1.72
Pvi011	sg0.contig128385	2193	2528	intergenic	NA	NA	46.55	182.1	9.76
Pvi012	sg0.contig163407	742	930	intergenic	NA	NA	23.68	1.06	25.84
Pvi013	sg0.contig16791	2662	2871	exon	Pavirv00042857m.g	Unknown protein	3.61	173.24	2.3
Pvi014	sg0.contig168921	1654	1842	intergenic	NA	NA	0	0	71.78
Pvi015	sg0.contig243741	1552	1740	exon	Pavirv00026129m.g	FAE1/Type III polyketide synthase-like protein	73.44	329.84	80.4
Pvi016	sg0.contig270164	349	558	intergenic	NA	NA	0	0	132.66
Pvi017	sg0.contig279582	327	536	intergenic	NA	NA	0	0	132.08
Pvi018	sg0.contig28677	7415	7603	intergenic	NA	NA	0	0	16.65
Pvi019	sg0.contig31377	5106	5357	intergenic	NA	TAS3b	659.78	3246.29	155.63
Pvi020	sg0.contig32864	5165	5395	intergenic	NA	NA	627.68	1647.41	168.26
Pvi021	sg0.contig33790	3275	3484	intergenic	NA	NA	695.9	1917.02	190.08
Pvi022	sg0.contig346546	982	1170	intergenic	NA	NA	111.97	4.96	192.95
Pvi023	sg0.contig44369	5664	5852	intergenic	NA	NA	41.34	461.98	9.19
Pvi024	sg0.contig54128	2825	3034	intergenic	NA	TAS3b	82.27	266.77	12.06

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower	Panicle
Sbi001	chromosome_1	8844205	8844540	exon	Sb01g010000	Calmodulin	0	0	123.05
Sbi002	chromosome_1	12085982	12086212	exon	Sb01g013070	2-aminoethanethiol dioxygenase	0	0	80.7
Sbi003	chromosome_1	14038275	14038463	exon	Sb01g014720	Protein kinase 1	0	0	4.86
Sbi004	chromosome_1	14729967	14730155	exon	Sb01g015220	similar to DEK domain-containing chromatin associated protein	0	0	4.86
Sbi005	chromosome_1	60705161	60705412	intergenic	NA	TAS3a	357.52	690.03	1440.53
Sbi006	chromosome_1	66161037	66161372	exon	Sb01g042880	Ninja-family protein 1	0	0.75	241.52
Sbi007	chromosome_1	68854756	68854944	exon and intron	Sb01g045760	F-box family protein (RNI-like)	0	0	49.51
Sbi008	chromosome_1	69685299	69685487	intergenic	NA	NA	0.39	0	2
Sbi009	chromosome_10	2346346	2346765	intergenic	NA	NA	0	0	1104.86
Sbi010	chromosome_10	2357568	2358050	intergenic	NA	NA	0	0	642.14
Sbi011	chromosome_10	9550364	9550552	exon	Sb10g008970	Ninja-family protein 1	0	0	80.12
Sbi012	chromosome_10	56580303	56580596	intergenic	NA	NA	0	0	869.07
Sbi013	chromosome_10	56924015	56924203	exon	Sb10g027220	Auxin response factor 18	0	2.26	8.58
Sbi014	chromosome_2	1600301	1600636	intergenic	NA	NA	0	0	204.03
Sbi015	chromosome_2	1610230	1610565	intergenic	NA	NA	0	0	945.47
Sbi016	chromosome_2	1649847	1650203	intron	Sb02g001725	Unknown protein	0	0	349.69
Sbi017	chromosome_2	1668780	1669409	intergenic	NA	NA	0	0	1392.17
Sbi018	chromosome_2	4491033	4491221	intergenic	NA	NA	0	4.78	0
Sbi019	chromosome_2	4740996	4741226	exon	Sb02g004180	Pumilio-like protein 1	0	0	20.32
Sbi020	chromosome_2	5469757	5469966	exon and intron	Sb02g004730	Histone H1	0	0	211.47
Sbi021	chromosome_2	54531694	54532050	exon	Sb02g022100	"Receptor-like kinase, RLP"	0	0	196.59
Sbi022	chromosome_2	57932092	57932280	exon	Sb02g023960	NAC domain protein	0	0	12.88
Sbi023	chromosome_2	67954678	67954908	exon	Sb02g033260	Transposon protein (Retrovirus-related Pol polyprotein from TNT 1-94)	0	0	6.01
Sbi024	chromosome_2	75985697	75985927	exon and intron	Sb02g042300	zinc finger protein	0	0	16.31
Sbi025	chromosome_2	76717335	76717523	exon and intron	Sb02g042970	NA	0	0	17.46
Sbi026	chromosome_3	28876749	28876937	exon	Sb03g017590	Photosystem II reaction center protein H	6.61	2.01	3.72
Sbi027	chromosome_4	1403569	1403757	exon	Sb04g001670	Trehalose-6-phosphate synthase 9	0	0	7.73
Sbi028	chromosome_4	6207621	6207809	exon	Sb04g006240	Methyl-CpG-binding domain-containing protein 9	0	0	94.72
Sbi029	chromosome_4	8708404	8708655	intergenic	NA	NA	0.39	1.01	80.41
Sbi030	chromosome_4	54797159	54797347	intergenic	NA	NA	11.27	2.77	67.25
Sbi031	chromosome_4	55470182	55470412	intergenic	NA	TAS3b	95.99	133.88	112.17
Sbi032	chromosome_4	55474178	55474408	intergenic	NA	NA	101.43	388.8	250.39
Sbi033	chromosome_4	58779380	58779568	exon	Sb04g028640	microtubule-associated proteins 70-2	0	0	74.4
Sbi034	chromosome_5	1134423	1134611	exon	Sb05g001080	"Nucleotidyltransferase family protein, putative, expressed"	0	0	19.75
Sbi035	chromosome_5	10522813	10523001	intron	Sb05g006470	Terpene synthase	0	0	5.72
Sbi036	chromosome_5	49711729	49711917	exon	Sb05g020280	Retinoblastoma protein 2	0	0	12.02
Sbi037	chromosome_5	58850688	58850876	exon	Sb05g025560	Forkhead family transcription factor	0	0	14.02
Sbi038	chromosome_6	52411580	52411789	exon	Sb06g023250	Protein of unknown function (DUF789)	0	0	16.02
Sbi039	chromosome_7	5674099	5674287	exon	Sb07g004460	MYB domain protein	0	0	60.38
Sbi040	chromosome_7	36753466	36753654	intergenic	NA	NA	0	0	1212.46
Sbi041	chromosome_7	62374633	62374821	exon	Sb07g027260	Ethylene-responsive transcription factor	0	0	10.59
Sbi042	chromosome_8	6109458	6109646	intergenic	NA	NA	24.87	41.27	244.38
Sbi043	chromosome_8	7098142	7098351	exon	Sb08g005380	PLATZ transcription factor	0	0	9.16
Sbi044	chromosome_9	988238	988426	exon	Sb09g001110	Retinoblastoma protein 2	0	0	21.18
Sbi045	chromosome_9	6329927	6330136	intergenic	NA	NA	0	0	11.16
Sbi046	chromosome_9	6651265	6651453	exon and intron	Sb09g005195	Receptor-like kinase	0	0	20.89
Sbi047	chromosome_9	11835824	11836033	exon	Sb09g007190	Receptor-like kinase	0	0.5	52.37
Sbi048	chromosome_9	52255994	52256245	exon and intron	Sb09g022600	Ubiquitin-conjugating enzyme E2 7	0.78	0	46.64
Sbi049	Sb01g006630.1	1609	1797	exon	Sb01g006630.1	Nucleotidase (5')	0	0	35.48
Sbi050	Sb01g007120.1	1441	1629	exon	Sb01g007120.1	Serine/threonine protein kinase (SAPK8)	0	0	8.58
Sbi051	Sb01g030290.1	1099	1287	exon	Sb01g030290.1	"Protein kinase family protein, putative, expressed"	0	0	4.86
Sbi052	Sb01g031870.1	325	555	exon	Sb01g031870.1	Allene oxide cyclase	0	1.01	37.49
Sbi053	Sb01g033165.1	350	538	exon	Sb01g033165.1	PLATZ transcription factor	0	0	6.58
Sbi054	Sb02g022120.1	832	1020	exon	Sb02g022120.1	Receptor-like kinase (CLV1-like)	0	0	5.44
Sbi055	Sb02g035170.2	634	822	exon	Sb02g035170.2	Translation factor (SUI1-like)	0	4.03	8.58
Sbi056	Sb03g046950.1	537	725	exon	Sb03g046950.1	Histone-lysine N-methyltransferase	0	0	10.59
Sbi057	Sb04g025840.1	776	964	exon	Sb04g025840.1	Sister chromatid cohesion protein PDS5-like protein	0	0	5.15
Sbi058	Sb06g022050.1	1011	1241	exon	Sb06g022050.1	Isocitrate dehydrogenase [NADP]	0	0.25	15.17
Sbi059	Sb07g006830.1	127	315	exon	Sb07g006830.1	Paired amphipathic helix protein Sin3	0	0	30.62
Sbi060	Sb07g014930.1	9	596	exon	Sb07g014930.1	Nucleobase-ascorbate transporter 2	0	0	1787.35
Sbi061	Sb07g021430.1	332	520	exon	Sb07g021430.1	MYB domain protein	0	0	7.73
Sbi062	Sb07g026820.1	1765	1953	exon	Sb07g026820.1	Serrate RNA effector molecule	0	0	4.86
Sbi063	Sb09g019930.1	1707	1937	exon	Sb09g019930.1	Pyruvate phosphate dikinase	6.61	0	5.15
Sbi064	Sb10g005020.1	400	588	exon	Sb10g005020.1	MYB domain protein	0	0	28.62
Sbi065	Sb10g025230.1	563	751	exon	Sb10g025230.1	Receptor-like protein (Adiponectin receptor)	0	0	9.44
Sbi066	super_414	2303	2491	intergenic	NA	NA	0	1.01	2.29
Sbi067	super_59	105365	105553	intergenic	NA	NA	5.05	2.01	3.72
Sbi068	super_59	309757	309945	intergenic	NA	NA	6.61	0.75	7.73

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower	Panicle
Sbi24-001	chromosome_1	69451916	69452179	intergenic	NA	NA	0	34.73	0
Sbi24-002	chromosome_5	59021037	59021564	intergenic	NA	NA	0	90.34	0.86
Sbi24-003	chromosome_8	54109581	54109916	intergenic	NA	NA	0	12.08	0

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower	Root
Sit001	scaffold_1	8695639	8695890	intergenic	NA	NA	0	35.62	0.29
Sit002	scaffold_1	8697426	8697740	intergenic	NA	NA	0	18.4	0
Sit003	scaffold_1	8699041	8699229	intergenic	NA	NA	0	22.36	0
Sit004	scaffold_1	8710806	8711036	intergenic	NA	NA	0	17.61	0
Sit005	scaffold_1	8722838	8723047	intergenic	NA	NA	0	52.05	0.29
Sit006	scaffold_1	8725831	8726082	intergenic	NA	NA	0	31.27	0.29
Sit007	scaffold_1	8731488	8731760	intergenic	NA	NA	0	12.67	0
Sit008	scaffold_1	8732928	8733368	intergenic	NA	NA	0	59.57	0.29
Sit009	scaffold_1	8734765	8735079	intergenic	NA	NA	0	11.68	0.29
Sit010	scaffold_1	8739552	8739761	intergenic	NA	NA	0	19.39	0.58
Sit011	scaffold_1	11472390	11472578	intergenic	NA	NA	0	3.17	0
Sit012	scaffold_1	11486041	11486229	intergenic	NA	NA	0	19	0.29
Sit013	scaffold_1	11488606	11488815	intergenic	NA	NA	0	63.72	1.44
Sit014	scaffold_1	11490460	11490732	intergenic	NA	NA	0	48.09	0.29
Sit015	scaffold_1	11492305	11492535	intergenic	NA	NA	0	16.62	0
Sit016	scaffold_1	11518824	11519117	intergenic	NA	NA	0	10.29	0
Sit017	scaffold_1	11547435	11547623	intergenic	NA	NA	0	6.53	0
Sit018	scaffold_1	11560441	11560713	intergenic	NA	NA	0.33	91.43	0.58
Sit019	scaffold_1	11573596	11573889	intergenic	NA	NA	0	15.83	0
Sit020	scaffold_1	11575135	11575323	intergenic	NA	NA	0	14.45	0.29
Sit021	scaffold_1	12799467	12799802	intergenic	NA	NA	0	15.44	0
Sit022	scaffold_1	22720722	22720973	intergenic	NA	NA	0	18.21	0
Sit023	scaffold_1	22744636	22744845	intergenic	NA	NA	0	93.21	1.15
Sit024	scaffold_1	22762850	22763080	intergenic	NA	NA	0	142.29	2.02
Sit025	scaffold_1	22767909	22768202	intergenic	NA	NA	0	69.46	0.29
Sit026	scaffold_1	26950955	26951227	intergenic	NA	NA	0	42.35	0
Sit027	scaffold_1	26983802	26984179	intergenic	NA	NA	0	38.99	0.29
Sit028	scaffold_1	26985538	26985810	intergenic	NA	NA	0	28.5	0
Sit029	scaffold_1	26987932	26988225	intergenic	NA	NA	0	97.96	0
Sit030	scaffold_1	29380972	29381433	intergenic	NA	NA	0	120.32	1.15
Sit031	scaffold_1	29386951	29387391	intergenic	NA	NA	0	79.75	0.29
Sit032	scaffold_1	29393164	29393352	intergenic	NA	NA	0	35.23	0
Sit033	scaffold_1	29410683	29410871	intergenic	NA	NA	0	12.86	0.58
Sit034	scaffold_1	29411494	29411682	intergenic	NA	NA	0	337.81	0.87
Sit035	scaffold_1	29435907	29436221	intergenic	NA	NA	0	26.32	0.29
Sit036	scaffold_1	29438586	29438879	intergenic	NA	NA	0	16.43	0
Sit037	scaffold_1	29440626	29440898	intergenic	NA	NA	0	10.49	0.29
Sit038	scaffold_1	29441482	29441670	intergenic	NA	NA	0	14.05	0
Sit039	scaffold_1	29442517	29442768	intergenic	NA	NA	0	57.19	0
Sit040	scaffold_1	29444970	29445326	intergenic	NA	NA	0	48.68	0
Sit041	scaffold_1	30572775	30573047	intergenic	NA	TAS3b	5258.53	8974.1	81.89
Sit042	scaffold_123	507	695	intergenic	NA	NA	0	371.46	1.15
Sit043	scaffold_123	1412	1600	intergenic	NA	NA	0	810.2	8.07
Sit044	scaffold_123	3646	3834	intergenic	NA	NA	0	100.14	1.15
Sit045	scaffold_2	2226608	2227006	intergenic	NA	NA	0	144.47	1.15
Sit046	scaffold_2	2229370	2229726	intergenic	NA	NA	0	91.03	1.15
Sit047	scaffold_2	2234777	2235007	intergenic	NA	NA	0	18.01	0.29
Sit048	scaffold_2	2237072	2237302	intergenic	NA	NA	0	95.78	0.87
Sit049	scaffold_2	2240054	2240242	intergenic	NA	NA	0	10.88	0.29
Sit050	scaffold_2	2245240	2245533	intergenic	NA	NA	0	32.46	0.29
Sit051	scaffold_2	2247906	2248115	intergenic	NA	NA	0	31.86	0
Sit052	scaffold_2	2248607	2248795	intergenic	NA	NA	0	15.44	0
Sit053	scaffold_2	2249305	2249493	intergenic	NA	NA	0	51.26	0.29
Sit054	scaffold_2	2252234	2252422	intergenic	NA	NA	0	12.07	0.29
Sit055	scaffold_2	2254127	2254420	intergenic	NA	NA	0	17.61	0.58
Sit056	scaffold_2	2255224	2255412	intergenic	NA	NA	0	24.74	0
Sit057	scaffold_2	2260247	2260456	intergenic	NA	NA	0	13.85	0
Sit058	scaffold_2	2263595	2263783	intergenic	NA	NA	0	542.04	4.33
Sit059	scaffold_2	2264595	2264825	intergenic	NA	NA	0	54.82	0.29
Sit060	scaffold_2	2267157	2267429	intergenic	NA	NA	0	41.76	0
Sit061	scaffold_2	2275635	2275844	intergenic	NA	NA	0	31.47	0
Sit062	scaffold_2	2277778	2278050	intergenic	NA	NA	0	28.5	0
Sit063	scaffold_2	2935747	2935977	intergenic	NA	NA	0	28.5	0.58
Sit064	scaffold_2	2938424	2938654	intergenic	NA	NA	0	27.9	0
Sit065	scaffold_2	2946250	2946627	intergenic	NA	NA	0	65.31	0
Sit066	scaffold_2	2952855	2953106	intergenic	NA	NA	0	223.03	0.87
Sit067	scaffold_2	2954324	2954596	intergenic	NA	NA	0	17.42	0.29
Sit068	scaffold_2	2959640	2959933	intergenic	NA	NA	0	21.57	0
Sit069	scaffold_2	3003986	3004258	intergenic	NA	NA	0	63.92	0.29
Sit070	scaffold_2	3006730	3006918	intergenic	NA	NA	0	11.87	0
Sit071	scaffold_2	3007735	3007986	intergenic	NA	NA	0	60.95	0
Sit072	scaffold_2	3011780	3011968	intergenic	NA	NA	0	4.95	0
Sit073	scaffold_2	3025581	3026021	intergenic	NA	NA	0	101.72	0.29
Sit074	scaffold_2	3028241	3028597	intergenic	NA	NA	0	125.27	0
Sit075	scaffold_2	3030570	3030947	intergenic	NA	NA	0	105.88	1.73
Sit076	scaffold_2	3031779	3032093	intergenic	NA	NA	0	7.12	0
Sit077	scaffold_2	3055366	3055617	intergenic	NA	NA	0	26.72	0
Sit078	scaffold_2	3058088	3058402	intergenic	NA	NA	0	117.95	0.87
Sit079	scaffold_2	3059093	3059344	intergenic	NA	NA	0	37.01	0.29
Sit080	scaffold_2	3059812	3060084	exon	Si031682m.g	Unknown protein	0	13.26	0
Sit081	scaffold_2	3060918	3061106	intergenic	NA	NA	0	207.6	1.73
Sit082	scaffold_2	3061525	3061713	intergenic	NA	NA	0	15.44	0.29
Sit083	scaffold_2	3064275	3064547	intergenic	NA	NA	0	114.19	0.87
Sit084	scaffold_2	3715833	3716021	intergenic	NA	NA	0	15.24	0
Sit085	scaffold_2	3718693	3718965	intergenic	NA	NA	0	45.12	0.29
Sit086	scaffold_2	3720144	3720437	intergenic	NA	NA	0	59.77	0
Sit087	scaffold_2	3729906	3730157	exon	Si031795m.g	Unknown protein	0	48.68	0
Sit088	scaffold_2	3732462	3732713	intergenic	NA	NA	0	98.16	0.87
Sit089	scaffold_2	3737879	3738067	intergenic	NA	NA	0	21.97	0.29
Sit090	scaffold_2	3739141	3739392	intergenic	NA	NA	0	11.87	0.29
Sit091	scaffold_2	3740319	3740528	intergenic	NA	NA	0	18.8	0
Sit092	scaffold_2	3741469	3741783	intergenic	NA	NA	0	186.62	0.58
Sit093	scaffold_2	3743300	3743488	intergenic	NA	NA	0	25.53	0
Sit094	scaffold_2	3744406	3744594	intergenic	NA	NA	0	5.94	0
Sit095	scaffold_2	3745327	3745599	intergenic	NA	NA	0	17.02	0.87
Sit096	scaffold_2	4364629	4364817	intergenic	NA	NA	0	22.96	0.58
Sit097	scaffold_2	4364991	4365179	intergenic	NA	NA	0	8.51	0
Sit098	scaffold_2	4366857	4367129	intergenic	NA	NA	0	23.75	0.29
Sit099	scaffold_2	4369595	4369846	intergenic	NA	NA	0	11.48	0
Sit100	scaffold_2	4381730	4381918	intergenic	NA	NA	0	8.31	0.29
Sit101	scaffold_2	4393802	4394179	intergenic	NA	NA	0	35.82	0
Sit102	scaffold_2	4394981	4395253	intergenic	NA	NA	0	79.16	0.58
Sit103	scaffold_2	4401977	4402207	intergenic	NA	NA	0	13.06	0
Sit104	scaffold_2	4403716	4403904	intergenic	NA	NA	0	34.04	0.58
Sit105	scaffold_2	4404657	4405034	intergenic	NA	NA	0	247.57	1.44
Sit106	scaffold_2	4408475	4408915	intergenic	NA	NA	0	240.05	1.15
Sit107	scaffold_2	4420721	4420972	intergenic	NA	NA	0	143.28	0.29
Sit108	scaffold_2	4427007	4427363	intergenic	NA	NA	0	181.08	2.02
Sit109	scaffold_2	4429317	4429589	intergenic	NA	NA	0	61.55	1.15
Sit110	scaffold_2	4431766	4432227	intergenic	NA	NA	0	19	0
Sit111	scaffold_2	4443400	4443693	intergenic	NA	NA	0	16.03	0.29
Sit112	scaffold_2	4446112	4446447	intergenic	NA	NA	0	145.06	0
Sit113	scaffold_2	4452789	4453166	intergenic	NA	NA	0	68.47	0
Sit114	scaffold_2	4454792	4455169	intergenic	NA	NA	0	45.12	0
Sit115	scaffold_2	4457032	4457262	intergenic	NA	NA	0	87.47	0
Sit116	scaffold_2	4458038	4458352	intergenic	NA	NA	0	226.59	2.88
Sit117	scaffold_2	4459191	4459442	intergenic	NA	NA	0	10.69	0
Sit118	scaffold_2	4461734	4462069	intergenic	NA	NA	0	172.96	0.58
Sit119	scaffold_2	4464182	4464559	intergenic	NA	NA	0	16.62	0.58
Sit120	scaffold_2	4505769	4506083	intergenic	NA	NA	0	57.39	1.15
Sit121	scaffold_2	4517991	4518200	intergenic	NA	NA	0	8.11	0
Sit122	scaffold_2	4521073	4521366	intergenic	NA	NA	0	21.18	0.58
Sit123	scaffold_2	4522448	4522720	intergenic	NA	NA	0	32.65	0
Sit124	scaffold_2	4524101	4524310	intergenic	NA	NA	0	94.2	0.58
Sit125	scaffold_2	4528407	4528658	intergenic	NA	NA	0	19.99	0
Sit126	scaffold_2	4531691	4532005	intergenic	NA	NA	0	27.51	0
Sit127	scaffold_2	6558909	6559286	intergenic	NA	NA	0	256.67	2.6
Sit128	scaffold_2	6560210	6560545	intergenic	NA	NA	0	45.71	0
Sit129	scaffold_2	6566461	6566670	intergenic	NA	NA	0	27.11	0
Sit130	scaffold_2	6572761	6572949	intergenic	NA	NA	0	12.67	0.58
Sit131	scaffold_2	6576278	6576466	intergenic	NA	NA	0	25.92	0
Sit132	scaffold_2	6578028	6578279	intergenic	NA	NA	0	10.69	0
Sit133	scaffold_2	6589863	6590156	intergenic	NA	NA	0	38.59	0
Sit134	scaffold_2	6591001	6591189	intergenic	NA	NA	0	9.3	0.29
Sit135	scaffold_2	6591862	6592050	intergenic	NA	NA	0	63.53	0.58
Sit136	scaffold_2	6633015	6633224	intergenic	NA	NA	0	36.02	0
Sit137	scaffold_2	6636929	6637117	intergenic	NA	NA	0	114.58	0.58
Sit138	scaffold_2	6644849	6645289	intergenic	NA	NA	0	38.59	0.58
Sit139	scaffold_2	6646011	6646199	intergenic	NA	NA	0	32.85	0
Sit140	scaffold_2	6659763	6660077	intergenic	NA	NA	0	15.04	0
Sit141	scaffold_2	6662644	6662937	intergenic	NA	NA	0	92.22	0.58
Sit142	scaffold_2	6676912	6677121	intergenic	NA	NA	0	14.25	0
Sit143	scaffold_2	6678746	6679207	intergenic	NA	NA	0	139.12	1.15
Sit144	scaffold_2	6707248	6707583	intergenic	NA	NA	0	40.77	0
Sit145	scaffold_2	6714225	6714560	intergenic	NA	NA	0	79.75	0
Sit146	scaffold_2	6716005	6716235	intergenic	NA	NA	0	35.82	0.29
Sit147	scaffold_2	6717056	6717286	intergenic	NA	NA	0	10.09	0.29
Sit148	scaffold_2	6748782	6749012	intergenic	NA	NA	0	29.09	0
Sit149	scaffold_2	6762344	6762595	intergenic	NA	NA	0	51.85	0
Sit150	scaffold_2	6763034	6763243	intergenic	NA	NA	0	39.78	0.87
Sit151	scaffold_2	6765830	6766018	intergenic	NA	NA	0	102.12	0.29
Sit152	scaffold_2	6783327	6783515	intergenic	NA	NA	0	35.42	0.87
Sit153	scaffold_2	6789926	6790114	intergenic	NA	NA	0	9.7	0
Sit154	scaffold_2	6805375	6805605	intergenic	NA	NA	0	39.58	0.87
Sit155	scaffold_2	6810415	6810666	intergenic	NA	NA	0	39.98	0.29
Sit156	scaffold_2	6814869	6815099	intergenic	NA	NA	0	15.44	0
Sit157	scaffold_2	6817185	6817373	intergenic	NA	NA	0	17.61	0.29
Sit158	scaffold_2	6817817	6818047	intergenic	NA	NA	0	12.86	0.29
Sit159	scaffold_2	6825708	6825896	intergenic	NA	NA	0	12.27	0
Sit160	scaffold_2	6828920	6829150	intergenic	NA	NA	0	70.65	0.58
Sit161	scaffold_2	6857308	6857496	intergenic	NA	NA	0	61.15	0.87
Sit162	scaffold_2	6863514	6863702	intergenic	NA	NA	0	8.31	0
Sit163	scaffold_2	6865240	6865533	intergenic	NA	NA	0	63.92	0
Sit164	scaffold_2	7435133	7435384	intergenic	NA	NA	0	249.95	2.6
Sit165	scaffold_2	7436060	7436290	intergenic	NA	NA	0	21.18	0.29
Sit166	scaffold_2	7453197	7453427	intergenic	NA	NA	0	35.62	0
Sit167	scaffold_2	7467009	7467260	intergenic	NA	NA	0	74.01	0
Sit168	scaffold_2	7471199	7471429	intergenic	NA	NA	0	29.88	0
Sit169	scaffold_2	7491864	7492094	intergenic	NA	NA	0	11.08	0
Sit170	scaffold_2	7504782	7505159	intergenic	NA	NA	0	37.4	0.29
Sit171	scaffold_2	7512869	7513162	intergenic	NA	NA	0	33.84	0.58
Sit172	scaffold_2	7514779	7515072	intergenic	NA	NA	0	31.07	0.87
Sit173	scaffold_2	7516309	7516497	intergenic	NA	NA	0	15.04	0
Sit174	scaffold_2	7600929	7601348	intergenic	NA	NA	0	103.5	0.29
Sit175	scaffold_2	7602085	7602420	intergenic	NA	NA	0	14.05	0
Sit176	scaffold_2	7605484	7605672	intergenic	NA	NA	0	8.11	0
Sit177	scaffold_2	7607518	7607853	intergenic	NA	NA	0	161.68	1.15
Sit178	scaffold_2	7609441	7609797	intergenic	NA	NA	0	16.23	0
Sit179	scaffold_2	7634975	7635247	intergenic	NA	NA	0	71.84	0.58
Sit180	scaffold_2	7635823	7636179	intergenic	NA	NA	0	34.83	0.29
Sit181	scaffold_2	7683505	7683798	intergenic	NA	NA	0	22.76	0
Sit182	scaffold_2	7686815	7687192	intergenic	NA	NA	0	76.98	0
Sit183	scaffold_2	7726294	7726482	intergenic	NA	NA	0	12.86	0.29
Sit184	scaffold_2	7727992	7728306	intergenic	NA	NA	0	22.36	0
Sit185	scaffold_2	7729123	7729353	intergenic	NA	NA	0	26.12	0
Sit186	scaffold_2	7736913	7737164	intergenic	NA	NA	0	41.16	0.58
Sit187	scaffold_2	7740752	7741066	intergenic	NA	NA	0	31.07	0.29
Sit188	scaffold_2	7741724	7742080	intergenic	NA	NA	0	32.65	0
Sit189	scaffold_2	7742403	7742591	intergenic	NA	NA	0	6.93	0
Sit190	scaffold_2	7755080	7755310	intergenic	NA	NA	0	8.31	0
Sit191	scaffold_2	7823134	7823343	intergenic	NA	NA	0	3.56	0
Sit192	scaffold_2	7830839	7831048	intergenic	NA	NA	0	22.76	0
Sit193	scaffold_2	7831934	7832164	intergenic	NA	NA	0	23.95	0
Sit194	scaffold_2	7833892	7834143	intergenic	NA	NA	0	90.84	0.58
Sit195	scaffold_2	7834924	7835196	intergenic	NA	NA	0	55.41	0.29
Sit196	scaffold_2	7836016	7836225	intergenic	NA	NA	0	205.22	1.73
Sit197	scaffold_2	7836644	7836874	intergenic	NA	NA	0	47.89	0.29
Sit198	scaffold_2	7838356	7838544	intergenic	NA	NA	0	213.73	1.73
Sit199	scaffold_2	7839657	7839845	intergenic	NA	NA	0	42.55	0
Sit200	scaffold_2	7844446	7844634	intergenic	NA	NA	0	16.43	0.58
Sit201	scaffold_2	9142009	9142260	intergenic	NA	NA	0	87.87	0.87
Sit202	scaffold_2	9149193	9149507	intergenic	NA	NA	0	52.64	0.87
Sit203	scaffold_2	9153045	9153359	intergenic	NA	NA	0	25.73	0.29
Sit204	scaffold_2	9197849	9198163	intergenic	NA	NA	0	25.73	0.29
Sit205	scaffold_2	9216246	9216560	intergenic	NA	NA	0	173.36	0.58
Sit206	scaffold_2	9217288	9217560	intergenic	NA	NA	0	21.97	0
Sit207	scaffold_2	9263789	9264103	intergenic	NA	NA	0	32.26	0
Sit208	scaffold_2	9264767	9264976	intergenic	NA	NA	0	40.96	0
Sit209	scaffold_2	9265627	9265941	intergenic	NA	NA	0	29.09	0.29
Sit210	scaffold_2	9272454	9272747	intergenic	NA	NA	0	12.27	0.29
Sit211	scaffold_2	9281411	9281725	intergenic	NA	NA	0	8.31	0
Sit212	scaffold_2	9283734	9284027	intergenic	NA	NA	0	312.28	2.88
Sit213	scaffold_2	9288412	9288684	intergenic	NA	NA	0	20.78	0.29
Sit214	scaffold_2	9294604	9294834	intergenic	NA	NA	0	56.99	0.58
Sit215	scaffold_2	9295631	9295861	intergenic	NA	NA	0	20.98	0
Sit216	scaffold_2	9299040	9299228	intergenic	NA	NA	0	10.09	0
Sit217	scaffold_2	9451103	9451354	intergenic	NA	NA	0	78.96	0.29
Sit218	scaffold_2	9452400	9452714	intergenic	NA	NA	0	54.62	2.31
Sit219	scaffold_2	9453689	9453898	intergenic	NA	NA	0	4.16	0
Sit220	scaffold_2	9457042	9457293	intergenic	NA	NA	0	16.82	0
Sit221	scaffold_2	9459687	9459938	intergenic	NA	NA	0	21.77	0
Sit222	scaffold_2	9461191	9461547	intergenic	NA	NA	0	32.46	0.29
Sit223	scaffold_2	9462448	9462636	intergenic	NA	NA	0	16.23	0.58
Sit224	scaffold_2	9543744	9544037	intergenic	NA	NA	0	12.67	0
Sit225	scaffold_2	9544578	9544829	intergenic	NA	NA	0	34.83	0.29
Sit226	scaffold_2	9545625	9545834	intergenic	NA	NA	0	109.24	0.87
Sit227	scaffold_2	9550941	9551213	intergenic	NA	NA	0	26.12	0.29
Sit228	scaffold_2	9555509	9555802	intergenic	NA	NA	0	23.55	0.29
Sit229	scaffold_2	9564393	9564623	intergenic	NA	NA	0	12.27	0
Sit230	scaffold_2	9565157	9565387	intergenic	NA	NA	0	31.47	0.87
Sit231	scaffold_2	9572334	9572564	intergenic	NA	NA	0	4.16	0
Sit232	scaffold_2	9583501	9583752	intergenic	NA	NA	0	39.18	0.29
Sit233	scaffold_2	9610934	9611143	intergenic	NA	NA	0	36.22	0
Sit234	scaffold_2	9613436	9613645	intergenic	NA	NA	0	20.58	0.29
Sit235	scaffold_2	9638185	9638478	intergenic	NA	NA	0	27.31	0
Sit236	scaffold_2	9640496	9640705	intergenic	NA	NA	0	12.27	0
Sit237	scaffold_2	10371028	10371447	intergenic	NA	NA	0	87.67	2.02
Sit238	scaffold_2	10373781	10374053	intergenic	NA	NA	0	61.55	0.29
Sit239	scaffold_2	10375691	10375963	intergenic	NA	NA	0	8.51	0
Sit240	scaffold_2	11335368	11335577	intergenic	NA	NA	0	33.05	0.58
Sit241	scaffold_2	11342703	11342954	intergenic	NA	NA	0	42.75	0.29
Sit242	scaffold_2	11758376	11758564	intergenic	NA	NA	0	11.28	0
Sit243	scaffold_2	11761586	11761774	intergenic	NA	NA	0	3.96	0
Sit244	scaffold_2	11767150	11767338	intergenic	NA	NA	0	86.48	0.29
Sit245	scaffold_2	11768071	11768280	intergenic	NA	NA	0	33.05	0.87
Sit246	scaffold_2	11771813	11772001	intergenic	NA	NA	0	6.93	0
Sit247	scaffold_2	11774779	11774967	intergenic	NA	NA	0	25.53	0
Sit248	scaffold_2	11801326	11801514	intergenic	NA	NA	0	16.23	0
Sit249	scaffold_2	11841511	11841825	intergenic	NA	NA	0	107.85	0.87
Sit250	scaffold_2	11842066	11842254	intergenic	NA	NA	0	6.73	0
Sit251	scaffold_2	11857500	11857856	intergenic	NA	NA	0	22.96	0
Sit252	scaffold_2	11861240	11861491	intergenic	NA	NA	0	40.37	0
Sit253	scaffold_2	15018323	15018574	intergenic	NA	NA	0	25.92	0
Sit254	scaffold_2	23201044	23201274	intergenic	NA	NA	0	9.1	0
Sit255	scaffold_2	24657046	24657234	intergenic	NA	NA	0	17.61	0
Sit256	scaffold_2	24671427	24671615	intergenic	NA	NA	0	10.88	0
Sit257	scaffold_2	24905463	24905651	intergenic	NA	NA	0	26.52	0.87
Sit258	scaffold_2	25012172	25012507	intergenic	NA	NA	0	19.59	0
Sit259	scaffold_2	25042247	25042477	intergenic	NA	NA	0	20.38	0
Sit260	scaffold_2	25043107	25043442	intergenic	NA	NA	0	10.09	0
Sit261	scaffold_2	25047203	25047391	intergenic	NA	NA	0	11.28	0
Sit262	scaffold_2	25123313	25123648	intergenic	NA	NA	0	17.02	0
Sit263	scaffold_2	26262148	26262420	intergenic	NA	NA	0	9.3	0
Sit264	scaffold_2	26281630	26281818	intergenic	NA	NA	0	19	0
Sit265	scaffold_2	26295575	26295763	intergenic	NA	NA	0	40.37	0
Sit266	scaffold_2	26298312	26298521	intergenic	NA	NA	0	16.23	0
Sit267	scaffold_2	37247811	37247999	intergenic	NA	NA	0	41.56	1.73
Sit268	scaffold_2	37248483	37248734	intergenic	NA	NA	0	8.71	0
Sit269	scaffold_2	37250480	37250794	intergenic	NA	NA	0	44.53	0.29
Sit270	scaffold_2	37252604	37252792	intergenic	NA	NA	0	18.4	0
Sit271	scaffold_2	37254298	37254528	intergenic	NA	NA	0	42.35	0.29
Sit272	scaffold_2	37255185	37255415	intergenic	NA	NA	0	32.06	0.29
Sit273	scaffold_2	37256115	37256366	intergenic	NA	NA	0	28.1	0.29
Sit274	scaffold_2	37257182	37257433	intergenic	NA	NA	0	18.4	0
Sit275	scaffold_2	37260071	37260259	intergenic	NA	NA	0.33	18.8	0
Sit276	scaffold_2	37261605	37261856	intergenic	NA	NA	0	59.17	0.87
Sit277	scaffold_2	37264730	37265065	intergenic	NA	NA	0	31.47	0
Sit278	scaffold_2	37265761	37265991	intergenic	NA	NA	0	24.14	0.29
Sit279	scaffold_2	37267310	37267540	intergenic	NA	NA	0	33.05	0.29
Sit280	scaffold_2	37271302	37271490	intergenic	NA	NA	0	11.48	0
Sit281	scaffold_2	37272481	37272669	intergenic	NA	NA	0	27.9	0.29
Sit282	scaffold_2	38363229	38363522	intergenic	NA	NA	0	28.5	0
Sit283	scaffold_2	38370890	38371078	intergenic	NA	NA	0	14.05	0
Sit284	scaffold_2	38374799	38375113	intergenic	NA	NA	0	18.4	0
Sit285	scaffold_2	38395458	38395688	intergenic	NA	NA	0	113	0.29
Sit286	scaffold_2	39063896	39064231	intergenic	NA	NA	0	79.36	0.29
Sit287	scaffold_2	39064907	39065242	intergenic	NA	NA	0	28.5	0.29
Sit288	scaffold_2	39066704	39067039	intergenic	NA	NA	0	14.05	0
Sit289	scaffold_2	39608863	39609093	intergenic	NA	NA	0	48.68	0.29
Sit290	scaffold_2	39618125	39618334	intergenic	NA	NA	0	16.62	0.87
Sit291	scaffold_2	39628647	39628835	intergenic	NA	NA	0	154.16	2.88
Sit292	scaffold_2	39632238	39632426	intergenic	NA	NA	0	5.74	0
Sit293	scaffold_2	39633337	39633567	intergenic	NA	NA	0	4.35	0
Sit294	scaffold_2	39639542	39639961	intergenic	NA	NA	0	58.78	0
Sit295	scaffold_2	39642065	39642400	intergenic	NA	NA	0	20.19	0
Sit296	scaffold_2	39650294	39650629	intergenic	NA	NA	0	33.84	0
Sit297	scaffold_2	39651503	39652048	intergenic	NA	NA	0	186.22	1.73
Sit298	scaffold_2	39652887	39653075	intergenic	NA	NA	0	58.18	0.29
Sit299	scaffold_2	39655577	39655828	intergenic	NA	NA	0.33	38.79	0.87
Sit300	scaffold_2	39671137	39671430	intergenic	NA	NA	0	29.29	0
Sit301	scaffold_2	39672427	39672741	intergenic	NA	NA	0	26.12	0
Sit302	scaffold_2	39682023	39682211	intergenic	NA	NA	0	13.26	0
Sit303	scaffold_2	39683773	39684087	intergenic	NA	NA	0	32.65	0
Sit304	scaffold_2	39690925	39691470	intergenic	NA	NA	0	142.09	0.58
Sit305	scaffold_2	39698716	39698946	intergenic	NA	NA	0	17.61	0.58
Sit306	scaffold_2	39701868	39702119	intergenic	NA	NA	0	58.78	0.58
Sit307	scaffold_2	40071824	40072138	intergenic	NA	NA	0	53.43	0.29
Sit308	scaffold_2	40073872	40074060	intron	Si031670m.g	Unknown protein	0	4.75	0
Sit309	scaffold_2	40078870	40079184	intergenic	NA	NA	0	244.21	0.87
Sit310	scaffold_2	40081431	40081808	intergenic	NA	NA	0	73.82	0.58
Sit311	scaffold_2	40082064	40082399	intergenic	NA	NA	0	42.75	0
Sit312	scaffold_2	47536683	47536913	exon	Si033798m.g	Unknown protein	0	14.45	0.29
Sit313	scaffold_2	47538499	47538708	intergenic	NA	NA	0	73.82	0.29
Sit314	scaffold_2	47539380	47539568	intergenic	NA	NA	0	12.86	0
Sit315	scaffold_3	3259901	3260110	intergenic	NA	NA	21.28	228.18	18.17
Sit316	scaffold_3	5278344	5278616	intergenic	NA	NA	0	86.88	0.58
Sit317	scaffold_3	5279571	5279906	intergenic	NA	NA	0	25.13	0.29
Sit318	scaffold_3	5282679	5282993	intergenic	NA	NA	0	40.37	0.29
Sit319	scaffold_3	5370544	5370732	intergenic	NA	NA	0	8.71	0
Sit320	scaffold_3	5467207	5467395	intergenic	NA	NA	0	78.96	0.87
Sit321	scaffold_3	5469483	5469713	intergenic	NA	NA	0	12.67	0
Sit322	scaffold_3	5504426	5504761	intergenic	NA	NA	0	14.84	0
Sit323	scaffold_3	5507028	5507258	exon	Si023884m.g	NA	0	28.3	0.58
Sit324	scaffold_3	5510990	5511325	intergenic	NA	NA	0	88.06	0
Sit325	scaffold_3	5512761	5513201	intergenic	NA	NA	0	89.85	0.29
Sit326	scaffold_3	5521332	5521520	intergenic	NA	NA	0	17.22	0
Sit327	scaffold_3	14073843	14074199	intergenic	NA	NA	0	31.07	0
Sit328	scaffold_3	14074655	14074990	intergenic	NA	NA	0	78.57	0.29
Sit329	scaffold_3	14088349	14088684	intergenic	NA	NA	0	7.72	0
Sit330	scaffold_3	14089302	14089490	intergenic	NA	NA	0	20.58	0
Sit331	scaffold_3	14091449	14091868	intergenic	NA	NA	0	197.7	1.44
Sit332	scaffold_3	14103234	14103506	intergenic	NA	NA	0	24.94	0
Sit333	scaffold_3	14104189	14104398	intergenic	NA	NA	0	6.53	0
Sit334	scaffold_3	14105892	14106122	intergenic	NA	NA	0	289.33	1.15
Sit335	scaffold_3	14106811	14107104	intergenic	NA	NA	0	80.15	2.02
Sit336	scaffold_3	14120623	14120979	intergenic	NA	NA	0	28.3	0.29
Sit337	scaffold_3	14122487	14122843	intergenic	NA	NA	0	109.24	0.87
Sit338	scaffold_3	14143096	14143389	intergenic	NA	NA	0	229.36	1.15
Sit339	scaffold_3	14147722	14147910	intergenic	NA	NA	0	26.12	0
Sit340	scaffold_3	14149007	14149279	intergenic	NA	NA	0	83.51	0.58
Sit341	scaffold_3	14157656	14157886	intergenic	NA	NA	0	14.45	0
Sit342	scaffold_3	20531947	20532135	intergenic	NA	NA	0	1.58	0
Sit343	scaffold_3	21982494	21982703	intergenic	NA	NA	0	56.6	1.44
Sit344	scaffold_3	21983620	21983934	intergenic	NA	NA	0	49.08	0
Sit345	scaffold_3	21986104	21986460	intergenic	NA	NA	0	25.13	0
Sit346	scaffold_3	34357143	34357394	intergenic	NA	NA	0	38	0.29
Sit347	scaffold_3	38680062	38680271	intergenic	NA	NA	0	18.01	0.29
Sit348	scaffold_3	38762680	38762868	intergenic	NA	NA	0	48.68	0.87
Sit349	scaffold_3	38763903	38764238	intergenic	NA	NA	0	12.86	0
Sit350	scaffold_3	43754639	43754932	intergenic	NA	NA	0	388.08	2.31
Sit351	scaffold_3	43759599	43759871	intergenic	NA	NA	0	20.98	0.29
Sit352	scaffold_3	43787937	43788209	intergenic	NA	NA	0	54.82	0.29
Sit353	scaffold_3	43981978	43982397	intergenic	NA	NA	0	194.34	1.73
Sit354	scaffold_3	44004542	44004772	intergenic	NA	NA	0	16.62	0.29
Sit355	scaffold_3	44008604	44008960	intergenic	NA	NA	0	35.62	0.29
Sit356	scaffold_3	44009481	44009711	intergenic	NA	NA	0	12.27	0
Sit357	scaffold_3	44024321	44024572	intergenic	NA	NA	0	96.77	1.15
Sit358	scaffold_3	44027134	44027385	intergenic	NA	NA	0	31.47	0.58
Sit359	scaffold_3	44034506	44034694	intergenic	NA	NA	0	11.28	0
Sit360	scaffold_3	44042950	44043243	intergenic	NA	NA	0	109.04	0.29
Sit361	scaffold_3	44051188	44051460	intergenic	NA	NA	0	19.59	0
Sit362	scaffold_3	45778379	45778609	intergenic	NA	NA	0	14.84	0
Sit363	scaffold_3	45781560	45781916	intergenic	NA	NA	0	32.06	1.15
Sit364	scaffold_3	45786649	45786963	intergenic	NA	NA	0	72.23	0
Sit365	scaffold_3	45790079	45790351	intergenic	NA	NA	0	33.25	0.29
Sit366	scaffold_3	45790982	45791275	intergenic	NA	NA	0	81.53	0.29
Sit367	scaffold_3	45807506	45807757	intergenic	NA	NA	0	20.78	0
Sit368	scaffold_3	45811998	45812354	intergenic	NA	NA	0	112.41	1.15
Sit369	scaffold_3	45814357	45814566	intergenic	NA	NA	0	24.94	0.29
Sit370	scaffold_3	45822045	45822359	intergenic	NA	NA	0	19.2	0.29
Sit371	scaffold_3	45828306	45828578	intergenic	NA	NA	0	53.23	0
Sit372	scaffold_3	45852858	45853046	intergenic	NA	NA	0	7.12	0
Sit373	scaffold_3	45855536	45855724	intergenic	NA	NA	0	24.54	0
Sit374	scaffold_3	45872874	45873062	intergenic	NA	NA	0	9.89	0.29
Sit375	scaffold_3	46167986	46168174	intergenic	NA	NA	0	32.06	0.29
Sit376	scaffold_3	46183976	46184227	intergenic	NA	NA	0	27.51	0.29
Sit377	scaffold_3	46186418	46186816	intergenic	NA	NA	0	37.2	0
Sit378	scaffold_3	46189615	46189845	intergenic	NA	NA	0	12.67	0
Sit379	scaffold_3	46193228	46193584	intergenic	NA	NA	0	54.42	0.58
Sit380	scaffold_3	46209428	46209700	intergenic	NA	NA	0	33.25	0.29
Sit381	scaffold_3	46212147	46212419	intergenic	NA	NA	0	59.57	0
Sit382	scaffold_3	46223835	46224023	intergenic	NA	NA	0	8.71	0
Sit383	scaffold_3	46225730	46225939	intergenic	NA	NA	0	16.62	0
Sit384	scaffold_3	46233126	46233314	intergenic	NA	NA	0	14.05	0
Sit385	scaffold_3	46235667	46235876	intergenic	NA	NA	0	34.43	0
Sit386	scaffold_3	46242051	46242323	intergenic	NA	NA	0	88.46	0
Sit387	scaffold_3	46296164	46296394	intergenic	NA	NA	0	45.52	0
Sit388	scaffold_3	46299414	46299644	intergenic	NA	NA	0	94.2	1.44
Sit389	scaffold_3	46307664	46307894	intergenic	NA	NA	0	3.56	0
Sit390	scaffold_3	46309237	46309593	intergenic	NA	NA	0	55.21	1.44
Sit391	scaffold_3	46310249	46310458	intergenic	NA	NA	0	19.2	0
Sit392	scaffold_3	46315593	46315928	intergenic	NA	NA	0	89.65	0.58
Sit393	scaffold_3	46316589	46316840	intergenic	NA	NA	0	21.18	0.58
Sit394	scaffold_3	46319148	46319357	intergenic	NA	NA	0	10.29	0
Sit395	scaffold_3	46320114	46320428	exon	Si025773m.g	Unknown protein	0	31.47	0.29
Sit396	scaffold_3	46322219	46322428	intergenic	NA	NA	0	15.83	0
Sit397	scaffold_3	46339793	46340107	intergenic	NA	NA	0	65.5	0.87
Sit398	scaffold_3	46342046	46342255	intergenic	NA	NA	0	6.13	0
Sit399	scaffold_3	46343234	46343422	intergenic	NA	NA	0	46.51	0
Sit400	scaffold_3	46345303	46345554	intergenic	NA	NA	0	9.89	0
Sit401	scaffold_3	46348916	46349167	intergenic	NA	NA	0	32.46	0
Sit402	scaffold_3	46349811	46349999	intergenic	NA	NA	0	38.59	0
Sit403	scaffold_3	46361057	46361413	exon	Si023846m.g	Unknown protein	0	11.28	0
Sit404	scaffold_3	46373090	46373383	intergenic	NA	NA	0	76.78	0.29
Sit405	scaffold_3	46376689	46376877	intergenic	NA	NA	0	16.03	0
Sit406	scaffold_3	46383939	46384232	intergenic	NA	NA	0	67.48	0
Sit407	scaffold_3	46400526	46400903	intergenic	NA	NA	0	109.24	0.87
Sit408	scaffold_3	46403239	46403784	intergenic	NA	NA	0	101.92	0
Sit409	scaffold_3	46413072	46413449	intergenic	NA	NA	0	168.81	1.44
Sit410	scaffold_3	46415488	46415739	intergenic	NA	NA	0	67.09	0.58
Sit411	scaffold_3	46417342	46417635	intergenic	NA	NA	0	11.87	0
Sit412	scaffold_3	46483111	46483341	intergenic	NA	NA	0	61.35	0.29
Sit413	scaffold_3	46488120	46488371	intergenic	NA	NA	0	19.2	0
Sit414	scaffold_3	46492304	46492555	intergenic	NA	NA	0	399.36	2.02
Sit415	scaffold_3	46493525	46493713	intergenic	NA	NA	0	4.35	0
Sit416	scaffold_3	46494672	46494923	intergenic	NA	NA	0	13.65	0
Sit417	scaffold_3	47069520	47069918	intergenic	NA	NA	0	16.62	0
Sit418	scaffold_3	47071919	47072107	intergenic	NA	NA	0	22.76	0.29
Sit419	scaffold_3	47072898	47073380	intergenic	NA	NA	0	156.74	0.58
Sit420	scaffold_3	47075295	47075546	intergenic	NA	NA	0	15.44	0.29
Sit421	scaffold_3	47076201	47076452	intergenic	NA	NA	0	42.35	0.58
Sit422	scaffold_3	47077444	47077674	intergenic	NA	NA	0	14.84	0
Sit423	scaffold_3	47083209	47083649	intergenic	NA	NA	0	37.4	0
Sit424	scaffold_3	47090049	47090447	intergenic	NA	NA	0	80.74	0.29
Sit425	scaffold_3	47093601	47093936	intergenic	NA	NA	0	152.18	0.87
Sit426	scaffold_3	47095269	47095457	intergenic	NA	NA	0	10.29	0
Sit427	scaffold_3	47096092	47096280	intergenic	NA	NA	0	25.53	0.58
Sit428	scaffold_3	47097265	47097495	intergenic	NA	NA	0	10.88	0
Sit429	scaffold_3	47131110	47131340	intergenic	NA	NA	0	62.73	0
Sit430	scaffold_3	47133457	47133729	intergenic	NA	NA	0	84.11	0
Sit431	scaffold_3	47232001	47232189	intergenic	NA	NA	0	13.65	0.29
Sit432	scaffold_3	47237316	47237504	intergenic	NA	NA	0	6.33	0
Sit433	scaffold_3	47242774	47243004	intergenic	NA	NA	0	20.38	0
Sit434	scaffold_3	47247631	47247840	intergenic	NA	NA	0	11.68	0
Sit435	scaffold_3	47251013	47251243	intergenic	NA	NA	0	17.02	0
Sit436	scaffold_3	47251820	47252050	intergenic	NA	NA	0	38.79	0.29
Sit437	scaffold_3	47252622	47252915	intergenic	NA	NA	0	13.65	0.29
Sit438	scaffold_3	47254299	47254487	intergenic	NA	NA	0	18.4	0.58
Sit439	scaffold_3	47261109	47261381	intergenic	NA	NA	0	10.69	0
Sit440	scaffold_3	47263212	47263400	intergenic	NA	NA	0	8.71	0
Sit441	scaffold_3	47264451	47264681	intergenic	NA	NA	0	87.08	0.58
Sit442	scaffold_3	47273009	47273407	intergenic	NA	NA	0	132.59	1.44
Sit443	scaffold_3	47278384	47278803	intergenic	NA	NA	0	42.35	0.29
Sit444	scaffold_3	47283445	47283633	intergenic	NA	NA	0	10.09	0.29
Sit445	scaffold_3	47291388	47291723	intergenic	NA	NA	0	48.29	0.29
Sit446	scaffold_3	47295816	47296046	intergenic	NA	NA	0	18.21	0
Sit447	scaffold_3	47298283	47298534	intergenic	NA	NA	0	293.68	1.73
Sit448	scaffold_3	47299049	47299279	intergenic	NA	NA	0.33	180.68	2.02
Sit449	scaffold_3	47303164	47303457	intergenic	NA	NA	0	169.01	0.58
Sit450	scaffold_3	47304026	47304424	intergenic	NA	NA	0	60.75	0.29
Sit451	scaffold_3	47305421	47305609	intergenic	NA	NA	0	123.29	0.58
Sit452	scaffold_3	47306653	47306841	intergenic	NA	NA	0	20.78	0
Sit453	scaffold_3	47307606	47307878	intergenic	NA	NA	0	129.43	0
Sit454	scaffold_3	47310181	47310621	intergenic	NA	NA	0	43.14	0.87
Sit455	scaffold_3	47320734	47320964	intergenic	NA	NA	0	31.07	0
Sit456	scaffold_3	47322183	47322497	intergenic	NA	NA	0	58.78	0.29
Sit457	scaffold_3	47323789	47324040	intergenic	NA	NA	0	29.49	0
Sit458	scaffold_3	47325980	47326252	intergenic	NA	NA	0	32.65	0.29
Sit459	scaffold_3	47330493	47330765	intergenic	NA	NA	0	35.03	0.29
Sit460	scaffold_3	47345630	47345881	intergenic	NA	NA	0	49.08	0
Sit461	scaffold_3	47357416	47357688	intergenic	NA	NA	0	17.02	0
Sit462	scaffold_3	47359155	47359385	intergenic	NA	NA	0	126.85	1.15
Sit463	scaffold_3	47367699	47367950	intergenic	NA	NA	0	105.88	0.29
Sit464	scaffold_3	48918153	48918530	intergenic	NA	NA	0	22.76	0
Sit465	scaffold_3	48919539	48919790	intergenic	NA	NA	0	81.14	0.58
Sit466	scaffold_3	48920747	48920998	intergenic	NA	NA	0	20.38	0
Sit467	scaffold_3	48923009	48923197	intergenic	NA	NA	0	17.61	0.29
Sit468	scaffold_3	48923879	48924088	intergenic	NA	NA	0	29.68	0
Sit469	scaffold_3	48924853	48925041	intergenic	NA	NA	0	11.87	0
Sit470	scaffold_3	49058434	49058748	intergenic	NA	NA	0	24.34	0.29
Sit471	scaffold_3	49063592	49063969	intergenic	NA	NA	0	64.71	0.58
Sit472	scaffold_3	49070347	49070577	intergenic	NA	NA	0	43.34	1.15
Sit473	scaffold_3	49072858	49073172	intergenic	NA	NA	0	46.51	0.87
Sit474	scaffold_3	49073839	49074195	intergenic	NA	NA	0	107.06	0
Sit475	scaffold_3	49075019	49075207	intergenic	NA	NA	0	54.62	0.29
Sit476	scaffold_3	49075938	49076168	intergenic	NA	NA	0	74.41	0
Sit477	scaffold_3	49080404	49080592	intergenic	NA	NA	0	54.42	0.87
Sit478	scaffold_3	49081369	49081578	intergenic	NA	NA	0	178.9	0
Sit479	scaffold_3	50038674	50038862	intergenic	NA	NA	0	3.96	0
Sit480	scaffold_3	50055988	50056449	intergenic	NA	NA	0	113.79	0.58
Sit481	scaffold_3	50060974	50061162	intergenic	NA	NA	0	49.87	0.29
Sit482	scaffold_380	3231	3419	intergenic	NA	NA	0	31.47	0
Sit483	scaffold_4	1541377	1541586	intergenic	NA	NA	0	20.98	0.29
Sit484	scaffold_4	1542654	1542842	intergenic	NA	NA	0	54.03	0
Sit485	scaffold_4	1544016	1544330	intergenic	NA	NA	0	94.79	0.29
Sit486	scaffold_4	2949484	2949714	intergenic	NA	NA	0	116.17	0.58
Sit487	scaffold_4	2959058	2959246	intergenic	NA	NA	0	7.12	0
Sit488	scaffold_4	2960221	2960409	intergenic	NA	NA	0	26.91	0.29
Sit489	scaffold_4	2971430	2971660	intergenic	NA	NA	0	34.43	0
Sit490	scaffold_4	2974496	2974684	intergenic	NA	NA	0	19.39	0.29
Sit491	scaffold_4	2976296	2976484	intergenic	NA	NA	0	17.61	0.58
Sit492	scaffold_4	3009615	3009803	intergenic	NA	NA	0	14.64	0
Sit493	scaffold_4	3054538	3054747	intergenic	NA	NA	0	24.54	0.29
Sit494	scaffold_4	3073254	3073505	intergenic	NA	NA	0	16.03	0.29
Sit495	scaffold_4	3078222	3078620	intergenic	NA	NA	0	34.43	0.29
Sit496	scaffold_4	15727080	15727268	intergenic	NA	NA	0	9.7	13.84
Sit497	scaffold_4	33280023	33280253	intergenic	NA	NA	0	20.98	0
Sit498	scaffold_4	33285398	33285691	intergenic	NA	NA	0	10.88	0
Sit499	scaffold_4	33286433	33286684	intergenic	NA	NA	0	41.36	0.29
Sit500	scaffold_4	33291731	33292108	intergenic	NA	NA	0	29.68	0.29
Sit501	scaffold_4	33306185	33306478	intergenic	NA	NA	0	120.92	0.29
Sit502	scaffold_4	33315981	33316211	intergenic	NA	NA	0	43.34	0.29
Sit503	scaffold_4	33328342	33328614	intergenic	NA	NA	0	31.27	0
Sit504	scaffold_4	33335944	33336321	intergenic	NA	NA	0	27.9	0
Sit505	scaffold_4	33342642	33342977	intergenic	NA	NA	0	38.59	0
Sit506	scaffold_4	33344145	33344354	intergenic	NA	NA	0	7.52	0
Sit507	scaffold_4	33347224	33347538	intergenic	NA	NA	0	38.99	0
Sit508	scaffold_4	33353163	33353372	intergenic	NA	NA	0	16.43	0.29
Sit509	scaffold_4	33360580	33360810	intergenic	NA	NA	0	18.21	0
Sit510	scaffold_4	33361776	33361985	intergenic	NA	NA	0	22.96	0
Sit511	scaffold_4	37304892	37305080	intergenic	NA	NA	0	36.41	0
Sit512	scaffold_4	37521182	37521496	intergenic	NA	NA	0	43.54	0
Sit513	scaffold_4	37531020	37531334	intergenic	NA	NA	0	18.01	0
Sit514	scaffold_4	37932620	37932808	intergenic	NA	NA	0	32.06	0.29
Sit515	scaffold_4	37936789	37937082	intergenic	NA	NA	0	55.02	0.29
Sit516	scaffold_4	37937509	37937697	intergenic	NA	NA	0	6.93	0
Sit517	scaffold_4	37950493	37950765	intergenic	NA	NA	0	100.53	0.87
Sit518	scaffold_5	8404339	8404569	intergenic	NA	NA	0	109.64	0
Sit519	scaffold_5	8407192	8407401	intergenic	NA	NA	0	62.93	0.58
Sit520	scaffold_5	8411834	8412022	intergenic	NA	NA	0	6.53	0
Sit521	scaffold_5	14407898	14408128	intergenic	NA	NA	0	16.23	0.29
Sit522	scaffold_5	14412583	14412855	intergenic	NA	NA	0	21.18	0
Sit523	scaffold_5	14419046	14419297	intergenic	NA	NA	0	44.53	0.29
Sit524	scaffold_5	14425758	14426072	intergenic	NA	NA	0	432.8	5.19
Sit525	scaffold_5	14432591	14432989	intergenic	NA	NA	0	17.42	0.29
Sit526	scaffold_5	14441997	14442353	intergenic	NA	NA	0	52.44	0.87
Sit527	scaffold_5	14443395	14443667	intergenic	NA	NA	0	8.31	0
Sit528	scaffold_5	14467765	14468016	intergenic	NA	NA	0	70.25	0
Sit529	scaffold_5	14468953	14469225	intergenic	NA	NA	0	16.82	0
Sit530	scaffold_5	14733948	14734136	intergenic	NA	NA	0	6.53	0
Sit531	scaffold_5	39478696	39478947	intergenic	NA	NA	0.33	450.02	2.6
Sit532	scaffold_5	39483784	39484245	intergenic	NA	NA	0	65.31	0
Sit533	scaffold_5	39490811	39491083	intergenic	NA	NA	0	38.99	0
Sit534	scaffold_5	39492373	39492603	intergenic	NA	NA	0	41.56	0.29
Sit535	scaffold_5	39493842	39494114	intergenic	NA	NA	0	18.01	0
Sit536	scaffold_5	39500283	39500639	intergenic	NA	NA	0	45.32	0.58
Sit537	scaffold_5	39502810	39503061	intergenic	NA	NA	0	19.99	0
Sit538	scaffold_5	45957998	45958333	intergenic	NA	NA	0	17.42	0
Sit539	scaffold_5	45958841	45959029	intergenic	NA	NA	0	119.53	0.87
Sit540	scaffold_5	45962778	45963092	intergenic	NA	NA	0	32.85	0.58
Sit541	scaffold_6	2364056	2364517	intergenic	NA	NA	0	107.85	0.29
Sit542	scaffold_6	2368453	2368725	exon	Si015877m.g	Unknown protein	0	322.57	2.02
Sit543	scaffold_6	2371431	2371619	intergenic	NA	NA	0	38.59	0
Sit544	scaffold_6	2373536	2373850	intergenic	NA	NA	0	40.57	0
Sit545	scaffold_6	2375776	2376006	intergenic	NA	NA	0	16.23	0
Sit546	scaffold_6	2382163	2382519	intergenic	NA	NA	0	103.5	0
Sit547	scaffold_6	2384965	2385153	intergenic	NA	NA	0	30.48	0
Sit548	scaffold_6	5404320	5404529	intergenic	NA	NA	0	9.5	0
Sit549	scaffold_6	5410373	5410666	intergenic	NA	NA	0	111.02	0.87
Sit550	scaffold_6	5415138	5415431	intergenic	NA	NA	0	50.07	1.15
Sit551	scaffold_6	5418046	5418255	intergenic	NA	NA	0	32.85	0
Sit552	scaffold_6	5425151	5425591	intergenic	NA	NA	0	290.51	2.02
Sit553	scaffold_6	5427152	5427361	intergenic	NA	NA	0	17.02	0.87
Sit554	scaffold_6	5451463	5451651	intergenic	NA	NA	0	15.63	0
Sit555	scaffold_6	5452217	5452405	intergenic	NA	NA	0	55.61	0
Sit556	scaffold_6	5453997	5454185	intergenic	NA	NA	0	64.12	0.29
Sit557	scaffold_6	5458757	5458945	intergenic	NA	NA	0	25.53	0
Sit558	scaffold_6	5461718	5461906	intergenic	NA	NA	0	67.68	0.87
Sit559	scaffold_6	5462774	5462983	intergenic	NA	NA	0	20.58	0.29
Sit560	scaffold_6	5463851	5464081	intergenic	NA	NA	0	8.31	0
Sit561	scaffold_6	5469479	5469793	intergenic	NA	NA	0	159.51	1.44
Sit562	scaffold_6	5476244	5476432	intergenic	NA	NA	0	36.22	0.58
Sit563	scaffold_6	5564585	5564920	exon	Si014422m.g	Unknown protein	0.33	37.6	0.58
Sit564	scaffold_6	5572020	5572271	intergenic	NA	NA	0	33.84	0
Sit565	scaffold_6	8553074	8553346	intergenic	NA	NA	0	31.27	0
Sit566	scaffold_6	8560102	8560311	intergenic	NA	NA	0	6.13	0
Sit567	scaffold_6	8639329	8639538	intergenic	NA	NA	0	17.61	0
Sit568	scaffold_6	9161138	9161347	intergenic	NA	NA	0	15.83	0
Sit569	scaffold_6	9449652	9449987	intergenic	NA	NA	0	6.53	0
Sit570	scaffold_7	13181987	13182196	intergenic	NA	NA	0	8.51	0
Sit571	scaffold_7	13238379	13238651	intergenic	NA	NA	0	7.72	0
Sit572	scaffold_7	13603674	13603925	intergenic	NA	NA	0	16.03	0
Sit573	scaffold_7	13605202	13605516	intergenic	NA	NA	0	18.01	0.29
Sit574	scaffold_7	13608412	13608705	intergenic	NA	NA	0	25.13	0
Sit575	scaffold_7	14096943	14097341	intergenic	NA	NA	0	18.4	0
Sit576	scaffold_7	14282207	14282626	intergenic	NA	NA	0	58.58	0.87
Sit577	scaffold_7	14288358	14288546	intergenic	NA	NA	0	11.48	0
Sit578	scaffold_7	14306845	14307075	intergenic	NA	NA	0	100.14	0.58
Sit579	scaffold_7	15523123	15523395	intergenic	NA	NA	0	18.6	0
Sit580	scaffold_7	15524795	15524983	intergenic	NA	NA	0	30.67	0.58
Sit581	scaffold_7	16580623	16580832	intergenic	NA	NA	0	5.74	0.29
Sit582	scaffold_7	16588328	16588537	intergenic	NA	NA	0	14.84	0
Sit583	scaffold_7	16599698	16599886	intergenic	NA	NA	0	6.73	0
Sit584	scaffold_7	17096239	17096553	intergenic	NA	NA	0	44.33	0
Sit585	scaffold_7	17100841	17101071	intergenic	NA	NA	0	15.44	0
Sit586	scaffold_7	17115013	17115411	intergenic	NA	NA	0	65.5	1.15
Sit587	scaffold_7	17117049	17117237	intergenic	NA	NA	0	3.17	0
Sit588	scaffold_7	17119334	17119585	intergenic	NA	NA	0	79.16	0.58
Sit589	scaffold_7	17121904	17122092	intergenic	NA	NA	0	35.82	1.73
Sit590	scaffold_7	17136103	17136480	intergenic	NA	NA	0	75	0.58
Sit591	scaffold_7	17138690	17138920	intergenic	NA	NA	0	17.22	0.29
Sit592	scaffold_7	17141162	17141455	intergenic	NA	NA	0	41.56	0
Sit593	scaffold_7	17144206	17144499	intergenic	NA	NA	0	17.81	0
Sit594	scaffold_7	17149025	17149255	intergenic	NA	NA	0	6.13	0
Sit595	scaffold_7	17177599	17177787	intergenic	NA	NA	0	36.81	0.29
Sit596	scaffold_7	17189431	17189682	intergenic	NA	NA	0	39.18	0.29
Sit597	scaffold_7	17199001	17199273	intergenic	NA	NA	0	351.67	3.75
Sit598	scaffold_7	17218436	17218624	intergenic	NA	NA	0	5.94	0
Sit599	scaffold_7	17227081	17227269	intergenic	NA	NA	0	46.51	0
Sit600	scaffold_7	17227826	17228014	intergenic	NA	NA	0	12.47	0
Sit601	scaffold_7	20022736	20023071	intergenic	NA	NA	0	16.43	0
Sit602	scaffold_7	20026386	20026574	intergenic	NA	NA	0	13.26	0
Sit603	scaffold_7	20031306	20031599	intergenic	NA	NA	0	17.61	0
Sit604	scaffold_7	20032135	20032470	intergenic	NA	NA	0	31.47	0.58
Sit605	scaffold_7	20033607	20033816	intergenic	NA	NA	0	18.8	0.58
Sit606	scaffold_7	20034636	20034950	intergenic	NA	NA	0	59.96	0.29
Sit607	scaffold_7	20037228	20037458	intergenic	NA	NA	0	40.96	0.29
Sit608	scaffold_7	20038486	20038905	intergenic	NA	NA	0	75	0.29
Sit609	scaffold_7	20046537	20046788	intergenic	NA	NA	0	42.55	0.29
Sit610	scaffold_7	20048235	20048549	intergenic	NA	NA	0	28.5	0.87
Sit611	scaffold_7	20049224	20049475	exon	Si011631m.g	Unknown protein	0	53.23	0.87
Sit612	scaffold_7	20084809	20085039	intergenic	NA	NA	0	27.9	0
Sit613	scaffold_7	20086580	20086768	intergenic	NA	NA	0	43.54	0.29
Sit614	scaffold_7	20492098	20492286	intergenic	NA	NA	0	5.94	0
Sit615	scaffold_7	20512594	20512782	intergenic	NA	NA	0	24.34	0.29
Sit616	scaffold_7	20523375	20523563	intergenic	NA	NA	0	4.55	0
Sit617	scaffold_7	30793844	30794137	intergenic	NA	NA	0	191.37	0.29
Sit618	scaffold_7	31804336	31804545	intergenic	NA	NA	0	11.87	0
Sit619	scaffold_7	31808072	31808323	intergenic	NA	NA	0	42.94	0.87
Sit620	scaffold_7	31809536	31809745	intergenic	NA	NA	0	23.35	0.29
Sit621	scaffold_7	31810330	31810581	intergenic	NA	NA	0	43.74	0.29
Sit622	scaffold_7	31815124	31815459	intergenic	NA	NA	0	52.84	0.29
Sit623	scaffold_7	31817115	31817324	intergenic	NA	NA	0	35.03	0
Sit624	scaffold_7	31824429	31824659	intergenic	NA	NA	0	65.7	0
Sit625	scaffold_7	31827182	31827454	intergenic	NA	NA	0	35.23	0
Sit626	scaffold_7	31834462	31834797	intergenic	NA	NA	0	57.19	0
Sit627	scaffold_7	31835454	31835642	intergenic	NA	NA	0	76.98	0.58
Sit628	scaffold_7	31838973	31839224	intergenic	NA	NA	0	67.09	0.87
Sit629	scaffold_7	31843710	31843898	intergenic	NA	NA	0	138.92	1.73
Sit630	scaffold_7	31846112	31846342	intergenic	NA	NA	0.33	27.51	0
Sit631	scaffold_7	31846936	31847187	intergenic	NA	NA	0	23.15	0
Sit632	scaffold_7	31848047	31848235	intergenic	NA	NA	0	25.53	0.58
Sit633	scaffold_7	31849657	31849929	intergenic	NA	NA	0.33	249.95	3.17
Sit634	scaffold_7	31857102	31857395	intergenic	NA	NA	0	58.38	0.29
Sit635	scaffold_7	31860518	31860853	intergenic	NA	NA	0	44.92	0
Sit636	scaffold_7	31862527	31862715	intergenic	NA	NA	0	25.53	0
Sit637	scaffold_7	31878553	31878741	intergenic	NA	NA	0	43.14	0
Sit638	scaffold_7	31879958	31880230	intergenic	NA	NA	0	66.69	0.29
Sit639	scaffold_7	31881215	31881550	intergenic	NA	NA	0	247.77	2.02
Sit640	scaffold_7	31883122	31883373	intergenic	NA	NA	0	43.14	0
Sit641	scaffold_7	31889608	31889901	intergenic	NA	NA	0	23.15	0
Sit642	scaffold_7	31890465	31890674	intergenic	NA	NA	0	61.74	0.87
Sit643	scaffold_7	31898611	31898967	exon	Si009445m.g	Gamma-tubulin complex component 4-like protein	0	58.58	0.29
Sit644	scaffold_7	31988146	31988418	intergenic	NA	NA	0	17.81	0.29
Sit645	scaffold_7	31991136	31991408	intergenic	NA	NA	0	30.08	0
Sit646	scaffold_7	31992364	31992615	intergenic	NA	NA	0	21.77	0
Sit647	scaffold_7	32000724	32000912	intergenic	NA	NA	0	50.46	0
Sit648	scaffold_7	32012928	32013158	intergenic	NA	NA	0	46.31	0
Sit649	scaffold_7	32013978	32014439	intergenic	NA	NA	0	81.14	0
Sit650	scaffold_7	32019168	32019419	intergenic	NA	NA	0	86.28	1.15
Sit651	scaffold_7	32020635	32020865	intergenic	NA	NA	0	5.34	0
Sit652	scaffold_7	32037979	32038230	intergenic	NA	NA	0	10.09	0
Sit653	scaffold_7	32038969	32039304	intergenic	NA	NA	0	34.43	0
Sit654	scaffold_7	32042325	32042513	intergenic	NA	NA	0	28.5	0
Sit655	scaffold_7	32397223	32397579	intergenic	NA	NA	0	41.56	0
Sit656	scaffold_7	32397780	32398031	intergenic	NA	NA	0	28.3	0
Sit657	scaffold_7	32401016	32401372	intergenic	NA	NA	0	96.77	0.87
Sit658	scaffold_7	32411136	32411345	intergenic	NA	NA	0	23.75	0
Sit659	scaffold_7	32414005	32414319	intergenic	NA	NA	0	75.6	0.58
Sit660	scaffold_7	35362884	35363156	intergenic	NA	NA	0	70.25	0.58
Sit661	scaffold_8	3707548	3707757	intergenic	NA	NA	0	18.21	0
Sit662	scaffold_8	3716140	3716370	intergenic	NA	NA	0	4.16	0
Sit663	scaffold_8	3718511	3718699	intergenic	NA	NA	0	5.74	0
Sit664	scaffold_8	3720357	3720545	intergenic	NA	NA	0	8.91	0.29
Sit665	scaffold_8	3721031	3721219	intergenic	NA	NA	0	27.31	0.29
Sit666	scaffold_8	3728270	3728458	intergenic	NA	NA	0	23.75	0.29
Sit667	scaffold_8	3759922	3760215	intergenic	NA	NA	0	14.05	0
Sit668	scaffold_8	3760698	3760949	intergenic	NA	NA	0	12.67	0
Sit669	scaffold_8	3761663	3761935	intergenic	NA	NA	0	65.9	0.29
Sit670	scaffold_8	3768286	3768726	intergenic	NA	NA	0	40.96	0.29
Sit671	scaffold_8	3770327	3770557	intergenic	NA	NA	0	42.15	0.29
Sit672	scaffold_8	3773859	3774110	intergenic	NA	NA	0	9.3	0
Sit673	scaffold_8	3779050	3779427	intergenic	NA	NA	0	278.64	1.73
Sit674	scaffold_8	3785074	3785451	intergenic	NA	NA	0	71.05	0.29
Sit675	scaffold_8	3788759	3788947	intergenic	NA	NA	0	3.36	0
Sit676	scaffold_8	3791684	3791956	intergenic	NA	NA	0	22.76	0.29
Sit677	scaffold_8	3792445	3792717	intergenic	NA	NA	0	32.26	0.29
Sit678	scaffold_8	3793747	3794145	intergenic	NA	NA	0	135.36	1.73
Sit679	scaffold_8	3794945	3795217	intergenic	NA	NA	0	37.8	0.58
Sit680	scaffold_8	3808545	3808775	intergenic	NA	NA	0	27.71	0
Sit681	scaffold_8	3813725	3814102	intergenic	NA	NA	0	61.35	0.29
Sit682	scaffold_8	3832405	3832593	intergenic	NA	NA	0	14.45	0
Sit683	scaffold_8	3841750	3842001	intergenic	NA	NA	0	12.47	0
Sit684	scaffold_8	3843400	3843630	intergenic	NA	NA	0	14.45	0
Sit685	scaffold_8	3848859	3849047	intergenic	NA	NA	0	40.77	1.15
Sit686	scaffold_8	3850708	3850938	intergenic	NA	NA	0	15.63	0
Sit687	scaffold_8	3852190	3852378	intergenic	NA	NA	0	13.65	0
Sit688	scaffold_8	3854245	3854496	intergenic	NA	NA	0	149.61	0.87
Sit689	scaffold_8	3857369	3857557	exon	Si028542m.g	Unknown protein	0	28.7	0
Sit690	scaffold_8	3859071	3859385	intergenic	NA	NA	0	19.99	0
Sit691	scaffold_8	3860670	3860900	intergenic	NA	NA	0	18.4	0.87
Sit692	scaffold_8	3861709	3861981	intergenic	NA	NA	0	53.04	0.87
Sit693	scaffold_8	3863059	3863352	intergenic	NA	NA	0	98.36	0
Sit694	scaffold_8	3863932	3864183	intergenic	NA	NA	0	74.61	0.87
Sit695	scaffold_8	3865579	3865851	intergenic	NA	NA	0	30.08	0
Sit696	scaffold_8	3866431	3866619	intergenic	NA	NA	0	50.66	0
Sit697	scaffold_8	3869904	3870365	intergenic	NA	NA	0	54.03	0.29
Sit698	scaffold_8	3871700	3872140	intergenic	NA	NA	0	70.85	0
Sit699	scaffold_8	3873173	3873466	intergenic	NA	NA	0	80.15	0.58
Sit700	scaffold_8	3876582	3876896	intergenic	NA	NA	0	24.74	0.87
Sit701	scaffold_8	3878421	3878651	intergenic	NA	NA	0	53.04	0.29
Sit702	scaffold_8	3879416	3879625	intergenic	NA	NA	0	19.79	0
Sit703	scaffold_8	3880518	3880790	intergenic	NA	NA	0	13.65	0
Sit704	scaffold_8	3883485	3883799	intergenic	NA	NA	0	77.18	0
Sit705	scaffold_8	3884643	3884999	intergenic	NA	NA	0	36.41	0.29
Sit706	scaffold_8	3886316	3886588	intergenic	NA	NA	0	36.81	0
Sit707	scaffold_8	3899641	3899913	intergenic	NA	NA	0	15.24	0
Sit708	scaffold_8	3903318	3903527	intergenic	NA	NA	0	15.83	0
Sit709	scaffold_8	3913483	3913671	intergenic	NA	NA	0	25.53	0
Sit710	scaffold_8	3925463	3925651	intergenic	NA	NA	0	1.78	0
Sit711	scaffold_8	8015304	8015492	intergenic	NA	NA	0	35.42	0
Sit712	scaffold_8	9565059	9565331	intergenic	NA	NA	0	19	0
Sit713	scaffold_8	9601237	9601467	intergenic	NA	NA	0	12.47	0
Sit714	scaffold_8	9633263	9633493	intergenic	NA	NA	0	10.88	0
Sit715	scaffold_8	11474898	11475128	intergenic	NA	NA	0	11.28	0
Sit716	scaffold_8	26185604	26185876	intergenic	NA	NA	0	22.36	0.29
Sit717	scaffold_8	26188849	26189037	intergenic	NA	NA	0	17.22	0.29
Sit718	scaffold_8	26199730	26199960	intergenic	NA	NA	0	4.16	0
Sit719	scaffold_8	26203039	26203227	intergenic	NA	NA	0	26.72	0
Sit720	scaffold_8	26203928	26204200	intergenic	NA	NA	0	13.65	0
Sit721	scaffold_8	26204924	26205217	intergenic	NA	NA	0	27.11	0
Sit722	scaffold_8	26207382	26207570	intergenic	NA	NA	0	4.75	0
Sit723	scaffold_8	26208956	26209312	intergenic	NA	NA	0	90.24	0.29
Sit724	scaffold_8	31798557	31798745	intergenic	NA	NA	0	30.28	0.29
Sit725	scaffold_8	31799181	31799558	intergenic	NA	NA	0	21.37	0
Sit726	scaffold_8	33796328	33796558	intergenic	NA	NA	0	17.22	0
Sit727	scaffold_8	34760780	34761010	intergenic	NA	NA	0	11.28	0
Sit728	scaffold_8	34765942	34766151	intergenic	NA	NA	0	10.29	0
Sit729	scaffold_8	34771768	34772019	intergenic	NA	NA	0	21.57	0
Sit730	scaffold_8	34892539	34892832	intergenic	NA	NA	0	87.67	0
Sit731	scaffold_8	34902939	34903274	intergenic	NA	NA	0	169.99	0.29
Sit732	scaffold_8	34904442	34904651	intergenic	NA	NA	0	49.87	0
Sit733	scaffold_8	34906049	34906279	exon	Si027210m.g	Unknown protein	0	167.03	1.15
Sit734	scaffold_8	34908443	34908715	intergenic	NA	NA	0	723.91	6.06
Sit735	scaffold_8	34910429	34910617	intergenic	NA	NA	0	4.55	0.29
Sit736	scaffold_8	34911498	34911770	intergenic	NA	NA	0	18.6	0
Sit737	scaffold_8	34913058	34913309	intergenic	NA	NA	0	124.87	1.15
Sit738	scaffold_8	34914057	34914266	intergenic	NA	NA	0	32.06	0.58
Sit739	scaffold_8	34953843	34954031	intergenic	NA	NA	0	100.14	1.15
Sit740	scaffold_8	34956075	34956263	intergenic	NA	NA	0	810.2	8.07
Sit741	scaffold_8	34956979	34957167	intergenic	NA	NA	0	371.46	1.15
Sit742	scaffold_8	34961738	34961968	intergenic	NA	NA	0	71.44	0.87
Sit743	scaffold_8	34968281	34968532	intergenic	NA	NA	0	24.14	0
Sit744	scaffold_8	34969623	34969811	intergenic	NA	NA	0	68.08	0.58
Sit745	scaffold_8	34971228	34971416	intergenic	NA	NA	0	69.66	0.87
Sit746	scaffold_8	34972016	34972246	intergenic	NA	NA	0	73.22	0.58
Sit747	scaffold_8	34973557	34973871	intergenic	NA	NA	0	28.3	0
Sit748	scaffold_8	34975603	34975875	intergenic	NA	NA	0	6.73	0
Sit749	scaffold_8	34977729	34978022	intergenic	NA	NA	0	238.86	2.31
Sit750	scaffold_8	34982062	34982355	intergenic	NA	NA	0	32.46	0
Sit751	scaffold_8	34983003	34983275	intergenic	NA	NA	0	162.08	2.31
Sit752	scaffold_8	34983960	34984253	intergenic	NA	NA	0	9.1	0
Sit753	scaffold_8	34985974	34986246	intergenic	NA	NA	0	9.1	0
Sit754	scaffold_8	34986973	34987224	intergenic	NA	NA	0	8.51	0
Sit755	scaffold_8	34987867	34988055	intergenic	NA	NA	0	3.56	0
Sit756	scaffold_8	34992622	34992957	intergenic	NA	NA	0	59.96	0.58
Sit757	scaffold_8	34994256	34994528	intergenic	NA	NA	0	19.79	0
Sit758	scaffold_8	34995146	34995397	intergenic	NA	NA	0.33	216.9	0.87
Sit759	scaffold_8	34996699	34996908	intergenic	NA	NA	0	11.48	0
Sit760	scaffold_8	35010980	35011189	intergenic	NA	NA	0	9.89	0
Sit761	scaffold_8	35057107	35057358	intergenic	NA	NA	0	15.24	0.29
Sit762	scaffold_8	35138590	35138778	intergenic	NA	NA	0	6.33	0
Sit763	scaffold_8	35164514	35164744	intergenic	NA	NA	0	18.6	0.29
Sit764	scaffold_8	35166733	35166963	intergenic	NA	NA	0	57.98	0.29
Sit765	scaffold_8	35168527	35168757	intergenic	NA	NA	0	9.89	0
Sit766	scaffold_8	35196706	35196894	intergenic	NA	NA	0	103.5	1.15
Sit767	scaffold_8	35234944	35235195	intergenic	NA	NA	0	17.81	0
Sit768	scaffold_8	35236987	35237301	intergenic	NA	NA	0	15.24	0.29
Sit769	scaffold_8	35237990	35238241	intergenic	NA	NA	0	39.98	0
Sit770	scaffold_8	35239668	35239877	intergenic	NA	NA	0	66.1	0
Sit771	scaffold_8	35243964	35244152	intergenic	NA	NA	0	169.99	0.58
Sit772	scaffold_8	35247277	35247528	intergenic	NA	NA	0	20.19	0
Sit773	scaffold_8	35252550	35252822	intergenic	NA	NA	0	40.57	0.29
Sit774	scaffold_8	35278233	35278463	intergenic	NA	NA	0	53.23	0.58
Sit775	scaffold_8	35280295	35280504	intergenic	NA	NA	0	21.97	0.29
Sit776	scaffold_8	35280942	35281130	intergenic	NA	NA	0	4.16	0
Sit777	scaffold_8	35281765	35281953	intergenic	NA	NA	0	20.78	0
Sit778	scaffold_8	35282449	35282721	intergenic	NA	NA	0	15.63	0
Sit779	scaffold_8	35283356	35283544	intergenic	NA	NA	0	21.57	0
Sit780	scaffold_8	35284292	35284606	intergenic	NA	NA	0	8.71	0
Sit781	scaffold_8	35287745	35288080	intergenic	NA	NA	0	15.24	0.29
Sit782	scaffold_8	35289612	35289863	intergenic	NA	NA	0	37.6	0.29
Sit783	scaffold_8	35294858	35295193	intergenic	NA	NA	0	28.3	0
Sit784	scaffold_8	37388460	37388690	intergenic	NA	NA	0	16.62	0
Sit785	scaffold_8	37391072	37391470	intergenic	NA	NA	0	366.31	3.46
Sit786	scaffold_8	37392917	37393273	intergenic	NA	NA	0	47.1	0
Sit787	scaffold_8	37393901	37394089	intergenic	NA	NA	0	21.18	0
Sit788	scaffold_9	3822381	3822569	intergenic	NA	NA	0	53.63	0.58
Sit789	scaffold_9	3832026	3832277	intergenic	NA	NA	0	17.02	0
Sit790	scaffold_9	3835378	3835566	intergenic	NA	NA	0	11.28	0
Sit791	scaffold_9	3838755	3838943	intergenic	NA	NA	0	10.69	0.29
Sit792	scaffold_9	3840139	3840327	intergenic	NA	NA	0	10.29	0
Sit793	scaffold_9	3851303	3851512	intergenic	NA	NA	0	27.51	0
Sit794	scaffold_9	3853661	3853849	intergenic	NA	NA	0	7.52	0
Sit795	scaffold_9	3857199	3857387	intergenic	NA	NA	0	41.76	0.58
Sit796	scaffold_9	3858172	3858360	intergenic	NA	NA	0	52.05	0
Sit797	scaffold_9	3860050	3860406	intergenic	NA	NA	0	576.48	3.46
Sit798	scaffold_9	3863076	3863306	intergenic	NA	NA	0	8.71	0
Sit799	scaffold_9	3864368	3864556	intergenic	NA	NA	0	17.42	0
Sit800	scaffold_9	3865310	3865624	intergenic	NA	NA	0	116.36	0.29
Sit801	scaffold_9	3867612	3867800	intergenic	NA	NA	0	4.35	0
Sit802	scaffold_9	3870584	3870772	exon and intron	Si038150m.g	Unknown protein	0	22.36	0
Sit803	scaffold_9	3872161	3872349	intergenic	NA	NA	0	96.77	0
Sit804	scaffold_9	3881051	3881365	intergenic	NA	NA	0	76.78	0.58
Sit805	scaffold_9	3886010	3886324	intergenic	NA	NA	0	54.62	0.87
Sit806	scaffold_9	3893809	3894039	intergenic	NA	NA	0	34.63	0.58
Sit807	scaffold_9	4007824	4008054	intergenic	NA	NA	0	7.12	0
Sit808	scaffold_9	4012724	4012954	intergenic	NA	NA	0	10.69	0
Sit809	scaffold_9	4015023	4015211	intergenic	NA	NA	0	23.15	0.58
Sit810	scaffold_9	4025433	4025873	intergenic	NA	NA	0	105.68	1.44
Sit811	scaffold_9	4027453	4027641	intergenic	NA	NA	0	5.94	0
Sit812	scaffold_9	4030388	4030597	intergenic	NA	NA	0	11.87	0
Sit813	scaffold_9	4032101	4032310	intergenic	NA	NA	0	17.61	0
Sit814	scaffold_9	4033727	4033936	intergenic	NA	NA	0	52.25	0
Sit815	scaffold_9	4042624	4042812	intergenic	NA	NA	0	17.02	0
Sit816	scaffold_9	4044113	4044616	intergenic	NA	NA	0	31.47	0
Sit817	scaffold_9	4053658	4053993	intergenic	NA	NA	0	18.4	0
Sit818	scaffold_9	4055727	4055957	intergenic	NA	NA	0	24.14	0
Sit819	scaffold_9	4059056	4059244	intergenic	NA	NA	0	28.7	0
Sit820	scaffold_9	4063531	4063719	intergenic	NA	NA	0	10.29	0.58
Sit821	scaffold_9	8377444	8377842	intergenic	NA	NA	0	80.54	0.58
Sit822	scaffold_9	8379011	8379262	intergenic	NA	NA	0	29.29	0
Sit823	scaffold_9	8384671	8385048	intergenic	NA	NA	0	91.63	0.58
Sit824	scaffold_9	8392319	8392675	intergenic	NA	NA	0	20.19	0
Sit825	scaffold_9	8396908	8397243	intergenic	NA	NA	0	42.75	0.29
Sit826	scaffold_9	8397951	8398223	intergenic	NA	NA	0	113.2	0.58
Sit827	scaffold_9	8398847	8399140	intergenic	NA	NA	0	24.14	0
Sit828	scaffold_9	8400436	8400771	intergenic	NA	NA	0	197.5	0.87
Sit829	scaffold_9	8401701	8401889	intergenic	NA	NA	0	66.3	0.58
Sit830	scaffold_9	8404855	8405064	intergenic	NA	NA	0	42.55	0
Sit831	scaffold_9	8966175	8966426	intergenic	NA	NA	0	43.14	1.15
Sit832	scaffold_9	8966712	8966900	intergenic	NA	NA	0	16.43	0.29
Sit833	scaffold_9	8969469	8969783	intergenic	NA	NA	0	26.72	0
Sit834	scaffold_9	11734417	11734605	intergenic	NA	NA	0	6.93	0.29
Sit835	scaffold_9	11747128	11747358	intergenic	NA	NA	0	14.25	0
Sit836	scaffold_9	11830955	11831143	intergenic	NA	NA	0	60.95	0.29
Sit837	scaffold_9	11833479	11833856	intergenic	NA	NA	0	53.83	0.58
Sit838	scaffold_9	11834915	11835166	intergenic	NA	NA	0	22.16	0.29
Sit839	scaffold_9	11837848	11838162	intergenic	NA	NA	0	265.58	0.87
Sit840	scaffold_9	11840086	11840316	exon	Si038412m.g	Unknown protein	0	16.82	0
Sit841	scaffold_9	11898751	11898939	intergenic	NA	NA	0	18.8	0
Sit842	scaffold_9	11899892	11900143	intergenic	NA	NA	0	7.32	0
Sit843	scaffold_9	11902212	11902400	intergenic	NA	NA	0	107.06	1.15
Sit844	scaffold_9	36148906	36149157	intergenic	NA	NA	0	13.46	0.58
Sit845	scaffold_9	36194909	36195202	intergenic	NA	NA	0	11.48	0
Sit846	scaffold_9	36286513	36286869	intergenic	NA	NA	0	20.78	0
Sit847	scaffold_9	36289837	36290151	intergenic	NA	NA	0	37.8	0.29
Sit848	scaffold_9	36290961	36291212	intergenic	NA	NA	0	19.2	0
Sit849	scaffold_9	36324251	36324544	intergenic	NA	NA	0	111.02	1.73
Sit850	scaffold_9	36325564	36325773	intergenic	NA	NA	0	16.43	0.29
Sit851	scaffold_9	36332612	36332800	intergenic	NA	NA	0	8.51	0
Sit852	scaffold_9	41396255	41396464	intergenic	NA	NA	0	61.94	0.87
Sit853	scaffold_9	44370721	44370909	intergenic	NA	NA	0	41.95	0
Sit854	scaffold_9	44373060	44373290	intergenic	NA	NA	0	177.12	0.87
Sit855	scaffold_9	44376782	44377012	intergenic	NA	NA	0	102.31	0.29
Sit856	scaffold_9	44378410	44378766	intergenic	NA	NA	0	137.34	0.87
Sit857	scaffold_9	44384382	44384570	intergenic	NA	NA	0	32.26	0.29
Sit858	scaffold_9	44386721	44386930	intergenic	NA	NA	0	38.19	0.58
Sit859	scaffold_9	44391490	44391825	intergenic	NA	NA	0	20.58	0
Sit860	scaffold_9	44392348	44392683	intergenic	NA	NA	0	126.85	0.58
Sit861	scaffold_9	44393376	44393648	intergenic	NA	NA	0	57.59	0.87
Sit862	scaffold_9	44456808	44457080	intergenic	NA	NA	0	6.13	0
Sit863	scaffold_9	44509441	44509629	intergenic	NA	NA	0	11.68	0.29
Sit864	scaffold_9	44588879	44589214	intergenic	NA	NA	0.67	18.01	0
Sit865	scaffold_9	44590860	44591111	intergenic	NA	NA	0	33.64	0.29
Sit866	scaffold_9	44615805	44615993	intergenic	NA	NA	0	8.91	0
Sit867	scaffold_9	44637956	44638186	intergenic	NA	NA	0	54.62	1.44
Sit868	scaffold_9	44640368	44640682	intergenic	NA	NA	0.33	33.84	0
Sit869	scaffold_9	44647536	44647787	intergenic	NA	NA	0	97.17	0.87
Sit870	scaffold_9	44648607	44648795	intergenic	NA	NA	0	6.33	0
Sit871	scaffold_9	44650726	44650914	intergenic	NA	NA	0	14.84	0
Sit872	scaffold_9	44664313	44664522	intergenic	NA	NA	0	7.52	0
Sit873	scaffold_9	44667025	44667255	intergenic	NA	NA	0	57.98	0.29
Sit874	scaffold_9	44675188	44675376	intergenic	NA	NA	0	65.31	0.58
Sit875	scaffold_9	44680672	44680902	intergenic	NA	NA	0	88.06	0.29
Sit876	scaffold_9	44682107	44682379	intergenic	NA	NA	0	256.48	1.73
Sit877	scaffold_9	44687408	44687617	intergenic	NA	NA	0	49.08	0.58
Sit878	scaffold_9	44692616	44692888	intergenic	NA	NA	0	40.17	0.29
Sit879	scaffold_9	44711598	44712080	intergenic	NA	NA	0	94.4	0.87
Sit880	scaffold_9	44727726	44728019	intergenic	NA	NA	0	16.82	0.58
Sit881	scaffold_9	44730106	44730294	intergenic	NA	NA	0	52.05	0.29
Sit882	scaffold_9	44734580	44734768	intergenic	NA	NA	0	23.75	0
Sit883	scaffold_9	44735740	44735928	intergenic	NA	NA	0	11.87	0
Sit884	scaffold_9	44746406	44746594	intergenic	NA	NA	0	7.32	0.58
Sit885	scaffold_9	44757549	44757842	intergenic	NA	NA	0	17.02	0.29
Sit886	scaffold_9	44771619	44771849	intergenic	NA	NA	0	39.58	0
Sit887	scaffold_9	44980541	44980834	intergenic	NA	NA	0	50.46	0.58
Sit888	scaffold_9	44981738	44981926	intergenic	NA	NA	0	40.57	0
Sit889	scaffold_9	44983440	44983670	intergenic	NA	NA	0	74.21	0
Sit890	scaffold_9	44986408	44986680	intergenic	NA	NA	0	8.71	0
Sit891	scaffold_9	44987360	44987548	intergenic	NA	NA	0	44.33	0.58
Sit892	scaffold_9	44988982	44989296	intergenic	NA	NA	0	43.54	0
Sit893	scaffold_9	44991608	44991817	intergenic	NA	NA	0	342.96	1.73
Sit894	scaffold_9	44997153	44997467	intergenic	NA	NA	0	25.13	0.29
Sit895	scaffold_9	45000472	45000660	intergenic	NA	NA	0	3.76	0
Sit896	scaffold_9	45006137	45006325	intergenic	NA	NA	0	19.59	0
Sit897	scaffold_9	45007959	45008147	intergenic	NA	NA	0	19.59	0
Sit898	scaffold_9	45016880	45017320	intergenic	NA	NA	0	70.85	0.58
Sit899	scaffold_9	45027162	45027455	intergenic	NA	NA	0	16.03	0
Sit900	scaffold_9	45031839	45032153	intergenic	NA	NA	0	21.18	0
Sit901	scaffold_9	45034289	45034498	intergenic	NA	NA	0	119.93	0.58
Sit902	scaffold_9	45038416	45038646	intergenic	NA	NA	0.33	45.32	0
Sit903	scaffold_9	45041964	45042152	intergenic	NA	NA	0	336.43	2.88
Sit904	scaffold_9	45046415	45046603	intergenic	NA	NA	0	5.94	0
Sit905	scaffold_9	45046839	45047174	intergenic	NA	NA	0	29.29	0
Sit906	scaffold_9	45050317	45050505	intergenic	NA	NA	0.33	45.71	0
Sit907	scaffold_9	45054863	45055051	intergenic	NA	NA	0	336.43	2.88
Sit908	scaffold_9	45060652	45060945	intergenic	NA	NA	0	8.51	0
Sit909	scaffold_9	45061122	45061310	intergenic	NA	NA	0	25.33	0.29
Sit910	scaffold_9	45087103	45087459	intergenic	NA	NA	0	76.78	0
Sit911	scaffold_9	45092926	45093240	intergenic	NA	NA	0	114.58	0.29
Sit912	scaffold_9	45120928	45121179	intergenic	NA	NA	0	72.83	0.87
Sit913	scaffold_9	48103594	48103782	intergenic	NA	NA	651.12	661.77	2854.9
Sit914	Si008344m	673	861	exon	Si008344m	RNA-dependent RNA polymerase (RDR)	4.32	7.32	4.04
Sit915	Si020124m	1601	1789	exon	Si020124m	Transposase (MuDR family)	1.33	72.43	1.73
Sit916	Si027215m	252	482	exon	Si027215m	Unknown protein	0	8.31	0

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower	Root
Sit24-001	scaffold_1	29310531	29310938	intergenic	NA	NA	0.33	39.58	0.29
Sit24-002	scaffold_2	36104540	36104755	intergenic	NA	NA	0	27.71	0
Sit24-003	scaffold_2	44171138	44171353	intergenic	NA	NA	0	31.66	0
Sit24-004	scaffold_2	46190198	46190893	intergenic	NA	NA	0	246.38	0.87
Sit24-005	scaffold_2	7068045	7068356	intergenic	NA	NA	2.99	6.33	2.88
Sit24-006	scaffold_3	46774825	46775688	intergenic	NA	NA	1.33	1184.03	3.46
Sit24-007	scaffold_3	49797860	49798123	intergenic	NA	NA	0	11.28	0
Sit24-008	scaffold_3	49812201	49812656	intergenic	NA	NA	0	13.65	0
Sit24-009	scaffold_65	11923	12186	intergenic	NA	NA	0	19.2	0
Sit24-010	scaffold_7	34955355	34955714	intergenic	NA	NA	0.33	241.63	0.29
Sit24-011	scaffold_7	35559312	35559911	intergenic	NA	NA	0.33	133.58	0
Sit24-012	scaffold_8	1158918	1159805	intergenic	NA	NA	1	1414.78	5.48
Sit24-013	scaffold_8	1165258	1166145	intergenic	NA	NA	0.33	1432.39	4.61
Sit24-014	scaffold_8	31967939	31968274	intergenic	NA	NA	0	27.11	0
Sit24-015	scaffold_8	31986958	31987221	intergenic	NA	NA	0	41.16	0
Sit24-016	scaffold_8	32009906	32010169	intergenic	NA	NA	0	38.59	0
Sit24-017	scaffold_8	32011179	32011442	intergenic	NA	NA	0	41.16	0
Sit24-018	scaffold_8	36844855	36845094	intergenic	NA	NA	0	12.07	0
Sit24-019	scaffold_8	37526223	37526486	intergenic	NA	NA	0	32.06	0
Sit24-020	scaffold_8	38697129	38697344	intergenic	NA	NA	0.33	37.8	0.58
Sit24-021	scaffold_9	57008212	57008619	intergenic	NA	NA	0	264.59	0.58
Sit24-022	scaffold_9	8643281	8643856	intergenic	NA	NA	1	415.39	2.6
Sit24-023	scaffold_9	8645330	8646193	intergenic	NA	NA	6.65	512.75	8.94

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower	Fruit
Sly001	SL2.40ch01	11691314	11691544	exon and intron	Solyc01g014140.2	Disease resistance protein (Cf9-9D)	1761.87	4.82	1.15
Sly002	SL2.40ch01	15581775	15581984	exon	Solyc01g014840.2	TIR-NBS-LRR resistance protein	7.51	0.23	0
Sly003	SL2.40ch01	3821659	3822120	intergenic	NA	NA	8196.81	1312.9	7.84
Sly004	SL2.40ch01	3974427	3974615	exon	Solyc01g009690.1	"Receptor-like kinase, RLP"	204.59	0.92	0.23
Sly005	SL2.40ch01	3980795	3980983	exon	Solyc01g009700.1	"Receptor-like kinase, RLP"	32.69	0	0
Sly006	SL2.40ch01	4522228	4522416	intron	Solyc01g009930.1	"Receptor-like kinase, RLP"	6.54	0.23	0
Sly007	SL2.40ch01	487846	488034	exon	Solyc01g005720.2	"Receptor-like kinase, RLP"	1.69	2.98	0
Sly008	SL2.40ch01	502721	502930	exon	Solyc01g005780.1	"Receptor-like kinase, RLP"	5.81	0.46	0.23
Sly009	SL2.40ch01	58042970	58043242	exon	Solyc01g058100.2	TAS3a	6.78	269.41	1.85
Sly010	SL2.40ch01	583510	583740	exon	Solyc01g005870.1	"Receptor-like kinase, RLP"	9.2	2.52	0.23
Sly011	SL2.40ch01	65282808	65283059	exon	Solyc01g066020.1	TIR-NBS-LRR resistance protein	7.75	8.94	1.85
Sly012	SL2.40ch01	72071991	72072221	exon	Solyc01g080340.2	Bromodomain (BSD) Containing Protein1	6.29	8.48	12.23
Sly013	SL2.40ch01	73514540	73514749	exon	Solyc01g086810.2	Cc-nbs-lrr resistance protein	30.99	2.52	3.69
Sly014	SL2.40ch01	73891246	73891434	exon	Solyc01g087200.2	Cc-nbs-lrr resistance protein	14.28	1.61	0.69
Sly015	SL2.40ch01	79186434	79186622	intron	Solyc01g096350.2	calcium-dependent protein kinase	151.56	56.4	41.52
Sly016	SL2.40ch01	82438767	82438955	exon	Solyc01g100720.2	Importin alpha-1b subunit	0.24	2.06	19.15
Sly017	SL2.40ch01	86483461	86483649	exon	Solyc01g107070.2	N-hydroxycinnamoyl/benzoyltransferase-like protein	0	6.19	0
Sly018	SL2.40ch01	88844671	88844859	exon	Solyc01g110360.2	Fructose-bisphosphate aldolase	4.36	0.46	0.46
Sly019	SL2.40ch01	88907958	88908188	exon	Solyc01g110430.2	Unknown Protein	0	2.75	1.15
Sly020	SL2.40ch02	12820384	12820572	intergenic	NA	NA	38.01	13.53	39.68
Sly021	SL2.40ch02	18712206	18712500	intron	Solyc02g032200.2	TIR-NBS-LRR resistance protein	51.09	13.99	34.83
Sly022	SL2.40ch02	19615105	19615377	exon	Solyc02g032650.2	Disease resistance protein (NBS-LRR)	363.9	40.58	14.3
Sly023	SL2.40ch02	21186653	21187366	exon	Solyc02g036270.2	Cc-nbs-lrr resistance protein	2014.88	1099.43	1000.25
Sly024	SL2.40ch02	38384345	38384533	exon	Solyc02g079190.2	AUXIN SIGNALING F-BOX 5	9.2	13.76	0.92
Sly025	SL2.40ch03	58160330	58160518	exon	Solyc03g114060.2	Os02g0742100 protein homolog; Bromo adjacent region	0.73	3.44	0.23
Sly026	SL2.40ch04	1797856	1798044	exon	Solyc04g008120.1	Cc-nbs-lrr resistance protein	0.48	0	4.38
Sly027	SL2.40ch04	24630922	24631110	exon and intron	Solyc04g026110.2	Cc-nbs-lrr resistance protein	3.63	11.69	5.08
Sly028	SL2.40ch04	2647747	2647935	exon and intron	Solyc04g009130.2	Cc-nbs-lrr resistance protein	7.51	0.46	0.23
Sly029	SL2.40ch04	2672195	2672383	exon	Solyc04g009170.1	RING/U-box superfamily protein	4.36	0.92	1.15
Sly030	SL2.40ch04	356019	356606	exon	Solyc04g005540.2	Cc-nbs-lrr resistance protein	1785.84	1772.62	2548.6
Sly031	SL2.40ch04	363125	363334	exon	Solyc04g005550.1	Cc-nbs-lrr resistance protein	115.25	5.73	5.31
Sly032	SL2.40ch04	363891	364121	exon	Solyc04g005550.1	Cc-nbs-lrr resistance protein	113.07	4.82	3.92
Sly033	SL2.40ch04	4349586	4349774	exon	Solyc04g012010.2	Cc-nbs-lrr resistance protein	1.69	0.69	1.85
Sly034	SL2.40ch04	57636402	57636590	exon	Solyc04g074030.2	"Receptor-like kinase, RLK"	3.87	0.23	0
Sly035	SL2.40ch04	57665342	57665530	exon	Solyc04g074050.2	"Receptor-like kinase, RLK"	3.63	0.23	0
Sly036	SL2.40ch05	2501055	2501390	exon	Solyc05g008070.2	Cc-nbs-lrr resistance protein	1477.87	174.72	71.74
Sly037	SL2.40ch05	2501645	2501833	exon	Solyc05g008070.2	Cc-nbs-lrr resistance protein	903.09	96.99	40.6
Sly038	SL2.40ch05	264381	264737	exon	Solyc05g005330.2	Cc-nbs-lrr resistance protein	216.94	117.4	27.45
Sly039	SL2.40ch05	26995358	26995546	intergenic	NA	NA	42.13	4.13	1.15
Sly040	SL2.40ch05	3809800	3810009	intergenic	NA	TAS4	215	184.35	18.69
Sly041	SL2.40ch05	3823093	3823302	intron	Solyc05g009630.2	Disease resistance protein	10.65	7.34	6.46
Sly042	SL2.40ch05	3823930	3824139	intron	Solyc05g009630.2	Disease resistance protein	93.7	104.1	41.75
Sly043	SL2.40ch05	6035968	6036156	exon	Solyc05g012890.1	Cc-nbs-lrr resistance protein	7.26	0.46	0.69
Sly044	SL2.40ch05	63126555	63126743	exon	Solyc05g053990.2	Cc-nbs-lrr resistance protein	8.23	2.75	12.69
Sly045	SL2.40ch05	63134875	63135105	exon	Solyc05g054010.2	Cc-nbs-lrr resistance protein	41.64	4.59	29.07
Sly046	SL2.40ch05	64526831	64527124	exon	Solyc05g055960.1	Unknown Protein	8.47	22.47	19.38
Sly047	SL2.40ch05	990346	990597	exon	Solyc05g006340.2	WD40 repeat-like superfamily protein	23.97	2.75	3.92
Sly048	SL2.40ch06	2162043	2162252	exon	Solyc06g008300.2	"Receptor-like kinase, RLP"	45.76	3.44	2.77
Sly049	SL2.40ch06	2375763	2375951	exon	Solyc06g008480.1	Cc-nbs-lrr resistance protein	1.21	0.23	4.38
Sly050	SL2.40ch06	2704876	2705064	exon and intron	Solyc06g008770.1	Cc-nbs-lrr resistance protein	2.42	2.29	7.38
Sly051	SL2.40ch06	28562445	28562633	exon and intron	Solyc06g048960.2	Ribonuclease 3-like protein 3	19.85	7.34	11.53
Sly052	SL2.40ch06	33825064	33825399	exon and intron	Solyc06g054620.2	zinc finger protein (CCCH-type)	236.3	157.52	186.62
Sly053	SL2.40ch06	35782193	35782381	exon	Solyc06g062440.2	Cc-nbs-lrr resistance protein	23.73	2.06	2.31
Sly054	SL2.40ch06	35782811	35782999	intron	Solyc06g062440.2	Cc-nbs-lrr resistance protein	25.42	2.52	1.38
Sly055	SL2.40ch06	39868870	39869058	exon and intron	Solyc06g069830.1	Unknown Protein	2.66	0	0.69
Sly056	SL2.40ch06	40413179	40413367	exon and intron	Solyc06g071500.2	Boron transporter	0	2.98	0
Sly057	SL2.40ch06	422402	422905	exon	Solyc06g005410.2	Unknown Protein	489.56	574.6	485.36
Sly058	SL2.40ch06	423755	424111	intergenic	NA	NA	4383.5	3884.36	3617.13
Sly059	SL2.40ch07	1534171	1534359	exon	Solyc07g006680.1	Hydroxycinnamoyl CoA quinate transferase	11.62	2.98	4.84
Sly060	SL2.40ch07	3097071	3097280	exon and intron	Solyc07g008320.2	Calcium-transporting ATPase 1	82.08	16.97	1.38
Sly061	SL2.40ch07	4197823	4198011	intron	Solyc07g009150.2	Uncharacterized aarF domain-containing protein kinase 1	5.81	0.46	0.23
Sly062	SL2.40ch07	4236524	4236712	exon	Solyc07g009180.1	Cc-nbs-lrr resistance protein	13.07	1.83	7.84
Sly063	SL2.40ch07	55161251	55161481	exon and intron	Solyc07g044800.2	Disease resistance protein (NBS-LRR)	47.94	33.25	55.83
Sly064	SL2.40ch07	57128605	57128793	intergenic	NA	NA	5.33	5.5	0
Sly065	SL2.40ch07	57378537	57378809	exon	Solyc07g049700.1	Cc-nbs-lrr resistance protein	69	8.48	3.92
Sly066	SL2.40ch07	59835180	59835389	exon	Solyc07g054140.2	Syntaxin 32; t-SNARE	1.21	0.46	4.15
Sly067	SL2.40ch07	61773819	61774007	intergenic	NA	NA	4.12	0.46	0
Sly068	SL2.40ch07	627923	628217	exon and intron	Solyc07g005770.2	Cc-nbs-lrr resistance protein	31.23	14.67	14.99
Sly069	SL2.40ch08	2162274	2162525	exon	Solyc08g007630.1	Cc-nbs-lrr resistance protein	295.62	126.57	151.79
Sly070	SL2.40ch08	2163128	2163316	exon	Solyc08g007630.1	Cc-nbs-lrr resistance protein	21.79	8.94	11.53
Sly071	SL2.40ch08	54940206	54940394	exon	Solyc08g068600.2	Pyridoxal phosphate-dependent decarboxylase	1.94	0.92	0.69
Sly072	SL2.40ch08	56933422	56933610	exon	Solyc08g075630.2	Cc-nbs-lrr resistance protein	10.17	0.46	0.23
Sly073	SL2.40ch08	57230469	57230888	exon	Solyc08g076000.2	Cc-nbs-lrr resistance protein	32.93	24.76	13.15
Sly074	SL2.40ch08	58262834	58263694	exon	Solyc08g077190.1	Unknown Protein	16189.77	6208.42	6274.15
Sly075	SL2.40ch08	62333070	62333279	intergenic	NA	NA	90.79	27.06	64.13
Sly076	SL2.40ch09	1259844	1260032	exon	Solyc09g007710.2	TIR-NBS-LRR resistance protein	3.39	0.23	0.69
Sly077	SL2.40ch09	13623002	13623232	exon	Solyc09g018220.1	Cc-nbs-lrr resistance protein	29.05	11.69	2.54
Sly078	SL2.40ch09	13623234	13623422	exon	Solyc09g018220.1	Cc-nbs-lrr resistance protein	30.26	16.28	2.31
Sly079	SL2.40ch09	3967023	3967211	exon	Solyc09g010630.2	Heat shock protein 70	1.45	0.46	4.38
Sly080	SL2.40ch09	57525214	57525402	exon	Solyc09g064610.2	Cc-nbs-lrr resistance protein	13.56	11.01	4.15
Sly081	SL2.40ch09	61831253	61831651	exon	Solyc09g074520.2	AUXIN SIGNALING F-BOX 5	656.62	140.78	34.83
Sly082	SL2.40ch09	67304144	67304374	exon	Solyc09g098130.1	Cc-nbs-lrr resistance protein	9.93	5.27	6.69
Sly083	SL2.40ch09	67304398	67304607	exon	Solyc09g098130.1	Cc-nbs-lrr resistance protein	13.8	4.82	10.61
Sly084	SL2.40ch10	2340948	2341199	exon	Solyc10g008230.1	Cc-nbs-lrr resistance protein	61.26	4.82	4.61
Sly085	SL2.40ch10	2347176	2347385	exon	Solyc10g008240.2	Cc-nbs-lrr resistance protein	67.07	3.44	3.46
Sly086	SL2.40ch10	46933076	46933600	exon	Solyc10g051050.1	Disease resistance protein (NBS-LRR)	2478.78	411.57	145.1
Sly087	SL2.40ch10	63952247	63952477	exon	Solyc10g085460.1	Cc-nbs-lrr resistance protein	4.84	3.21	7.38
Sly088	SL2.40ch11	10138594	10139223	exon	Solyc11g020100.1	Cc-nbs-lrr resistance protein	985.89	48.84	128.95
Sly089	SL2.40ch11	1183644	1183874	exon	Solyc11g006520.1	Cc-nbs-lrr resistance protein	46	7.8	18.22
Sly090	SL2.40ch11	1188991	1189179	exon	Solyc11g006530.1	Cc-nbs-lrr resistance protein	173.6	38.52	7.84
Sly091	SL2.40ch11	1243511	1243762	exon	Solyc11g006640.1	Cc-nbs-lrr resistance protein	99.99	10.78	16.61
Sly092	SL2.40ch11	2407878	2408066	exon	Solyc11g008140.1	Pectate lyase/Amb allergen	4.36	0.92	0.46
Sly093	SL2.40ch11	2700198	2700449	exon and intron	Solyc11g008530.1	Ribonuclease 3-like protein 3	79.17	21.78	152.02
Sly094	SL2.40ch11	2714883	2715113	intergenic	NA	NA	10.17	13.99	10.15
Sly095	SL2.40ch11	2715128	2715358	exon	Solyc11g008540.1	Ribonuclease 3-like protein 3	109.19	66.72	162.4
Sly096	SL2.40ch11	3158361	3158549	exon	Solyc11g009010.1	Hydrolase (Alpha/beta fold-1)	18.64	7.34	257.21
Sly097	SL2.40ch11	3828889	3829077	exon	Solyc11g010810.1	Glucosyltransferase (UDP-)	2.42	1.61	1.85
Sly098	SL2.40ch11	4396178	4396429	exon	Solyc11g011350.1	TIR-NBS-LRR resistance protein	11.14	11.01	2.08
Sly099	SL2.40ch11	48467937	48468483	exon and intron	Solyc11g065790.1	Disease resistance protein (NBS-LRR)	3309.96	2065.42	2269.7
Sly100	SL2.40ch11	50193221	50193409	exon	Solyc11g068360.1	Cc-nbs-lrr resistance protein	4.12	4.36	4.61
Sly101	SL2.40ch11	50665175	50665363	exon	Solyc11g069020.1	Cc-nbs-lrr resistance protein	35.83	3.67	2.54
Sly102	SL2.40ch11	51346901	51347173	exon	Solyc11g069620.1	Cc-nbs-lrr resistance protein	197.08	110.29	80.05
Sly103	SL2.40ch11	51373755	51373985	exon	Solyc11g069660.1	Disease resistance protein (NBS-LRR)	60.77	41.04	20.76
Sly104	SL2.40ch11	51613763	51613993	intron	Solyc11g069930.1	Disease resistance protein (R3a)	43.82	27.51	10.61
Sly105	SL2.40ch11	51664059	51664373	exon	Solyc11g070000.1	Disease resistance protein (NBS-LRR)	216.94	62.37	125.03
Sly106	SL2.40ch11	51980167	51980477	intron	Solyc11g071410.1	Disease resistance protein (R3a)	339.2	176.55	207.62
Sly107	SL2.40ch11	51986538	51986747	exon	Solyc11g071420.1	Cc-nbs-lrr resistance protein	219.6	80.02	153.17
Sly108	SL2.40ch11	51994233	51994421	exon and intron	Solyc11g071430.1	Cc-nbs-lrr resistance protein	14.28	5.04	9.92
Sly109	SL2.40ch11	52383175	52383446	intron	Solyc11g072000.1	Disease resistance protein (R3a)	222.75	99.97	153.87
Sly110	SL2.40ch11	7149578	7150249	intron	Solyc11g013770.1	Unknown Protein	1041.82	363.42	571.64
Sly111	SL2.40ch12	2778871	2779332	exon and intron	Solyc12g009520.1	"Receptor-like kinase, RLP"	2204.7	38.06	179.93
Sly112	SL2.40ch12	2959420	2959608	exon	Solyc12g009730.1	"Receptor-like kinase, RLP"	4.12	0	0.23
Sly113	SL2.40ch12	2973202	2973390	exon	Solyc12g009750.1	"Receptor-like kinase, RLP"	4.12	0	0.23
Sly114	SL2.40ch12	575664	575852	intergenic	NA	TAS3b	5.33	216.68	2.54
Sly115	SL2.40ch12	624505	624798	exon	Solyc12g006020.1	"Receptor-like kinase, RLP"	32.93	4.82	0.23
Sly116	SL2.40ch12	634517	634705	exon	Solyc12g006040.1	Disease resistance protein (NBS-LRR)	288.36	49.53	478.67
Sly117	SL2.40ch12	6403565	6403882	exon	Solyc12g016220.1	Cc-nbs-lrr resistance protein	111.37	61.45	106.11
Sly118	SL2.40ch12	65261486	65261674	exon	Solyc12g100010.1	"Receptor-like kinase, RLP"	19.13	0.23	0.69
Sly119	SL2.40ch12	7413607	7413795	exon	Solyc12g017800.1	Cc-nbs-lrr resistance protein	21.79	4.59	3.46
Sly120	Solyc00g102400.2.1	1668	1856	exon	Solyc00g102400.2.1	Cc-nbs-lrr resistance protein	3.15	1.83	9.92
Sly121	Solyc01g006550.2.1	1738	1989	exon	Solyc01g006550.2.1	"Receptor-like kinase, RLP"	256.64	1.15	0
Sly122	Solyc01g086810.2.1	1541	1729	exon	Solyc01g086810.2.1	Cc-nbs-lrr resistance protein	20.82	1.38	3.69
Sly123	Solyc04g009080.1.1	23	253	exon	Solyc04g009080.1.1	Disease resistance protein (NBS-LRR)	0.73	4.59	3.23
Sly124	Solyc06g005410.2.1	305	493	exon	Solyc06g005410.2.1	Unknown Protein	24.7	22.24	19.15
Sly125	Solyc06g008400.1.1	1761	1949	exon	Solyc06g008400.1.1	Cc-nbs-lrr resistance protein	3.87	0.69	5.31
Sly126	Solyc06g008800.1.1	1668	1856	exon	Solyc06g008800.1.1	Cc-nbs-lrr resistance protein	3.15	1.83	9.92
Sly127	Solyc06g048960.2.1	175	552	exon	Solyc06g048960.2.1	Ribonuclease 3-like protein 3	229.53	125.65	270.36
Sly128	Solyc07g017680.1.1	593	781	exon	Solyc07g017680.1.1	Lysine ketoglutarate reductase/saccharopine dehydrogenase	12.59	2.06	6.46
Sly129	Solyc08g075640.2.1	1115	1303	exon	Solyc08g075640.2.1	Cc-nbs-lrr resistance protein	5.08	4.36	2.08
Sly130	Solyc09g064610.2.1	1080	1352	exon	Solyc09g064610.2.1	Cc-nbs-lrr resistance protein	23.24	21.78	8.3
Sly131	Solyc10g051050.1.1	13	222	exon	Solyc10g051050.1.1	Disease resistance protein (NBS-LRR)	2147.08	344.16	127.11
Sly132	Solyc11g008540.1.1	5	319	exon	Solyc11g008540.1.1	Ribonuclease 3-like protein 3	188.85	133.45	396.55
Sly133	Solyc11g064770.1.1	554	742	exon	Solyc11g064770.1.1	Cc-nbs-lrr resistance protein	51.57	39.21	30.91
Sly134	Solyc11g065800.1.1	320	508	exon	Solyc11g065800.1.1	Cc-nbs-lrr resistance protein	56.17	23.39	26.3
Sly135	Solyc11g069990.1.1	193	381	exon	Solyc11g069990.1.1	Disease resistance protein (NBS-LRR)	90.31	33.02	60.44
Sly136	Solyc11g069990.1.1	594	803	exon	Solyc11g069990.1.1	Disease resistance protein (NBS-LRR)	16.46	7.34	10.61
Sly137	Solyc12g009770.1.1	872	1060	exon	Solyc12g009770.1.1	"Receptor-like kinase, RLP"	31.47	0.23	0.46

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower	Tuber
Stu001	chr01	136242	136494	exon	PGSC0003DMG400022785	Cc-nbs-lrr resistance protein	642.7	208.9	438.88
Stu002	chr01	136698	136928	exon and intron	PGSC0003DMG400022785	Cc-nbs-lrr resistance protein	152.33	45.89	121.61
Stu003	chr01	143656	143918	intergenic	NA	NA	663.37	213.44	486.16
Stu004	chr01	146068	146256	intergenic	NA	NA	27.02	12.19	50.7
Stu005	chr01	863166	863396	intergenic	NA	NA	47.16	5.5	41.58
Stu006	chr01	1721802	1722053	exon and intron	PGSC0003DMG400032156	2-oxoglutarate-dependent dioxygenase (Fe(II)-dependent)	93.52	0.24	0
Stu007	chr01	1848387	1848617	exon and intron	PGSC0003DMG400003478	2-oxoglutarate-dependent dioxygenase	156.04	0	0
Stu008	chr01	1867643	1867831	intergenic	NA	NA	25.96	0.24	0
Stu009	chr01	1924554	1924805	exon	PGSC0003DMG400021383	2-oxoglutarate-dependent dioxygenase (Fe(II)-dependent)	96.7	0.24	0
Stu010	chr01	4460526	4460757	exon	PGSC0003DMG400022699	TIR-NBS-LRR resistance protein	23.05	8.84	36.74
Stu011	chr01	18216603	18216854	exon	PGSC0003DMG400013085	TAS3a	20.13	133.37	84.59
Stu012	chr01	21774705	21774914	exon	PGSC0003DMG400024055	TIR-NBS-LRR resistance protein	244.26	30.12	405.85
Stu013	chr01	33510128	33510442	exon	PGSC0003DMG400011708	"Receptor-like kinase, RLP"	1481.97	179.26	43.86
Stu014	chr01	33510590	33510862	exon	PGSC0003DMG400011708	"Receptor-like kinase, RLP"	9446.86	701.26	127.31
Stu015	chr01	33933380	33933568	exon	PGSC0003DMG400016808	TIR-NBS-LRR resistance protein	38.68	5.5	5.98
Stu016	chr01	84272324	84272554	exon	PGSC0003DMG400002799	TIR-NBS-LRR resistance protein	26.49	14.1	8.54
Stu017	chr02	29476656	29476844	exon	PGSC0003DMG400013091	Disease resistance protein	40.8	0	0.28
Stu018	chr02	29505816	29506130	exon	PGSC0003DMG400013090	TIR-NBS-LRR resistance protein	26.76	19.6	35.89
Stu019	chr02	30912915	30913187	exon	PGSC0003DMG400012918	Disease resistance protein (NBS-LRR)	183.86	18.64	44.14
Stu020	chr02	38991556	38991828	exon	PGSC0003DMG400021477	Cc-nbs-lrr resistance protein	417.78	219.17	367.11
Stu021	chr02	39760011	39760199	exon	PGSC0003DMG400012650	TIR-NBS-LRR resistance protein	28.35	7.65	2.85
Stu022	chr02	49013538	49013747	exon	PGSC0003DMG400010444	Ankyrin repeat-containing protein	2.91	0.96	4.27
Stu023	chr02	50976544	50976984	exon	PGSC0003DMG400021098	Disease resistance protein (NBS-LRR)	32.59	21.75	94.56
Stu024	chr02	51406808	51406996	exon	PGSC0003DMG400008292	Disease resistance protein (NBS-LRR)	8.48	14.1	22.78
Stu025	chr02	67477792	67477980	intergenic	NA	NA	0	5.5	0
Stu026	chr03	4801714	4801902	exon	PGSC0003DMG400005046	Cc-nbs-lrr resistance protein	21.46	4.06	22.78
Stu027	chr03	35126496	35126684	exon	PGSC0003DMG400012024	"Methyltransferase, putative"	36.56	1.91	0
Stu028	chr04	174954	175436	exon	PGSC0003DMG400002820	Cc-nbs-lrr resistance protein	222	235.43	476.48
Stu029	chr04	181999	182187	intergenic	NA	NA	16.96	3.11	9.4
Stu030	chr04	182210	182419	intergenic	NA	NA	51.39	18.4	54.11
Stu031	chr04	597426	597614	intergenic	NA	NA	4.5	2.63	10.82
Stu032	chr04	745545	745733	exon	PGSC0003DMG402015877	Disease resistance protein (NBS-LRR)	3.71	4.78	13.39
Stu033	chr04	3005043	3005231	exon	PGSC0003DMG400006531	Disease resistance protein	2.91	0	6.55
Stu034	chr04	3774373	3774561	exon	PGSC0003DMG400011527	Disease resistance protein	10.6	2.39	13.96
Stu035	chr04	3789111	3789299	exon	PGSC0003DMG400011524	Disease resistance protein	11.92	5.02	3.7
Stu036	chr04	3810601	3810810	exon	PGSC0003DMG400011521	Disease resistance protein	16.96	2.15	6.84
Stu037	chr04	3829235	3829486	intergenic	NA	NA	1.32	0.24	15.38
Stu038	chr04	3835657	3835845	exon and intron	PGSC0003DMG400011518	Triosephosphate isomerase	10.6	2.87	15.95
Stu039	chr04	3856712	3856921	intergenic	NA	NA	14.04	1.67	43.01
Stu040	chr04	3874437	3874625	exon	PGSC0003DMG400032582	Disease resistance protein	11.13	2.39	15.66
Stu041	chr04	3880915	3881103	intergenic	NA	NA	13.78	5.98	12.25
Stu042	chr04	3893215	3893403	exon	PGSC0003DMG400032578	Disease resistance protein	0.26	0.24	9.4
Stu043	chr04	3897803	3898117	exon	PGSC0003DMG402032547	Disease resistance protein	10.6	2.39	37.88
Stu044	chr04	3999434	3999622	exon	PGSC0003DMG400032573	Disease resistance protein	14.31	0.96	1.99
Stu045	chr04	6149764	6150171	intergenic	NA	NA	32.85	17.45	10.25
Stu046	chr04	13832320	13832508	exon	PGSC0003DMG401012694	Glucosyltransferase (UDP-)	2.38	0.48	0.28
Stu047	chr04	13834580	13834768	exon	PGSC0003DMG402012694	Glucosyltransferase (UDP-)	19.34	1.43	3.7
Stu048	chr04	42119063	42119272	exon	PGSC0003DMG401016933	Cc-nbs-lrr resistance protein	95.9	30.12	56.39
Stu049	chr04	47978101	47978331	exon and intron	PGSC0003DMG400023022	NA	0	47.09	0
Stu050	chr04	51433799	51433987	exon	PGSC0003DMG400038897	Laccase 15	0	102.77	0
Stu051	chr05	1503681	1503995	exon	PGSC0003DMG400025099	Disease resistance protein	4.77	2.63	40.16
Stu052	chr05	2070519	2070728	exon	PGSC0003DMG400000816	Disease resistance protein	0.79	0.24	9.97
Stu053	chr05	2189103	2189291	intergenic	NA	NA	13.51	9.8	51.83
Stu054	chr05	2220491	2220679	intergenic	NA	TAS4	215.38	247.14	1612.85
Stu055	chr05	4052476	4052664	exon	PGSC0003DMG400030498	Disease resistance protein	6.09	1.43	11.68
Stu056	chr05	4055663	4055851	exon	PGSC0003DMG400030497	Disease resistance protein	7.42	1.91	12.53
Stu057	chr05	4060539	4060727	exon	PGSC0003DMG400030496	Disease resistance protein	9.27	2.15	12.53
Stu058	chr05	4371883	4372071	exon	PGSC0003DMG400018428	Disease resistance protein	28.35	14.1	19.65
Stu059	chr05	8211694	8211903	exon	PGSC0003DMG400013506	Disease resistance protein	59.87	13.15	1.99
Stu060	chr05	10445609	10445797	exon	PGSC0003DMG400017969	"Receptor-like kinase, RLP"	47.95	3.11	14.81
Stu061	chr05	54543413	54543601	intergenic	NA	NA	7.15	0.96	6.55
Stu062	chr05	55156602	55156853	exon	PGSC0003DMG402014608	Receptor-like protein 53	211.94	87.48	426.07
Stu063	chr05	58714315	58714503	exon	PGSC0003DMG400008449	Disease resistance protein (NBS-LRR)	7.95	14.1	21.36
Stu064	chr05	60273989	60274282	exon	PGSC0003DMG402023368	Histone-lysine N-methyltransferase	284.53	82.7	5.41
Stu065	chr06	2660393	2660623	exon	PGSC0003DMG402025507	"Receptor-like kinase, RLP"	7.68	0	4.27
Stu066	chr06	2772785	2773015	exon	PGSC0003DMG400025511	Disease resistance protein	7.15	2.39	0.28
Stu067	chr06	2828354	2828584	exon	PGSC0003DMG400010895	Disease resistance protein	11.39	1.91	3.13
Stu068	chr06	4079958	4080146	exon	PGSC0003DMG400014718	"Receptor-like kinase, RLP"	3.71	0	0
Stu069	chr06	4108800	4108988	exon	PGSC0003DMG400014720	Disease resistance protein (Hcr2-p5)	9.27	0	2.85
Stu070	chr06	6993875	6994315	exon	PGSC0003DMG400008697	Disease resistance protein (NBS-LRR)	2302.97	2524.19	4893.23
Stu071	chr06	14371212	14371484	exon	PGSC0003DMG402002428	TIR-NBS-LRR resistance protein	7.42	24.86	10.54
Stu072	chr06	14419962	14420192	exon	PGSC0003DMG400002426	TIR-NBS-LRR resistance protein	9.01	5.26	9.4
Stu073	chr06	16705803	16706033	exon	PGSC0003DMG401025689	Methyltransferase	42.39	2.15	0
Stu074	chr06	20667651	20667839	intergenic	NA	NA	8.48	5.02	12.82
Stu075	chr06	20670478	20670708	intergenic	NA	NA	28.08	21.03	65.51
Stu076	chr06	36934913	36935122	exon and intron	PGSC0003DMG400030758	zinc finger protein (CCCH-type)	19.34	12.67	21.36
Stu077	chr06	39350409	39350597	intergenic	NA	NA	3.97	2.63	5.98
Stu078	chr06	39351219	39351407	intergenic	NA	NA	21.19	2.87	8.26
Stu079	chr06	39386674	39386925	exon	PGSC0003DMG400031318	TIR-NBS-LRR resistance protein	18.81	3.35	7.12
Stu080	chr06	43344704	43344976	intergenic	NA	NA	5.83	2.15	5.13
Stu081	chr06	43803240	43803428	intergenic	NA	NA	3.18	3.11	6.27
Stu082	chr07	692240	692428	intergenic	NA	NA	0	4.3	0.28
Stu083	chr07	1376392	1376790	exon	PGSC0003DMG400038020	Disease resistance protein	506	154.88	113.92
Stu084	chr07	6098042	6098230	intergenic	NA	NA	23.84	0.48	1.42
Stu085	chr07	6517894	6518165	exon and intron	PGSC0003DMG400022980	purple acid phosphatase 27	47.16	25.1	22.21
Stu086	chr07	9673973	9674308	exon and intron	PGSC0003DMG402029961	Cc-nbs-lrr resistance protein	788.94	157.99	527.74
Stu087	chr07	37993432	37993662	exon	PGSC0003DMG400035666	Glycosyltransferase (UDP-) 1	5.83	1.91	12.82
Stu088	chr07	38352438	38352774	exon	PGSC0003DMG400013543	TIR-NBS-LRR resistance protein	40.8	12.91	33.32
Stu089	chr07	40489105	40489356	exon	PGSC0003DMG402000927	Disease resistance protein (NBS-LRR)	35.5	36.09	23.07
Stu090	chr07	40489400	40489588	exon	PGSC0003DMG402000927	Disease resistance protein (NBS-LRR)	12.72	11.71	21.36
Stu091	chr08	3731367	3731730	exon	PGSC0003DMG400018462	Disease resistance protein	6.09	2.15	18.23
Stu092	chr08	14236539	14236727	exon	PGSC0003DMG400030125	Ankyrin repeat-containing protein	22.52	15.06	47.56
Stu093	chr08	14236813	14237043	exon	PGSC0003DMG400030125	Ankyrin repeat-containing protein	19.87	9.08	63.23
Stu094	chr08	29939713	29939901	exon	PGSC0003DMG400029590	Disease resistance protein (NBS-LRR)	664.16	308.32	380.78
Stu095	chr08	30949703	30950103	exon	PGSC0003DMG400033632	"Receptor-like kinase, RLP"	98.82	16.49	82.88
Stu096	chr08	31922128	31922505	exon	PGSC0003DMG400010844	Unknown protein	237.11	21.03	150.95
Stu097	chr08	35075747	35075935	exon	PGSC0003DMG402030883	Disease resistance protein (NBS-LRR)	17.22	9.8	16.52
Stu098	chr08	36432803	36433012	exon	PGSC0003DMG400009324	Disease resistance protein (NBS-LRR)	649.59	304.98	369.11
Stu099	chr08	36441303	36441491	exon	PGSC0003DMG401009305	Disease resistance protein (NBS-LRR)	1.32	1.67	6.55
Stu100	chr08	36511533	36511721	exon	PGSC0003DMG400017061	Disease resistance protein (NBS-LRR)	3.71	3.11	1.14
Stu101	chr08	36680557	36681060	exon	PGSC0003DMG400024229	Unknown protein	1708.22	832.71	1027.01
Stu102	chr08	42221897	42222085	intergenic	NA	NA	3.71	20.08	30.19
Stu103	chr08	42228008	42228196	intergenic	NA	NA	11.39	5.02	9.4
Stu104	chr09	9460932	9461120	exon	PGSC0003DMG400006268	"Receptor-like kinase, RLP"	6.89	0	0
Stu105	chr09	22442157	22442660	exon	PGSC0003DMG400008588	Disease resistance protein (NBS-LRR)	1073.99	528.69	724.54
Stu106	chr09	24686767	24687081	exon	PGSC0003DMG400004413	Disease resistance protein (Tm-2^2)	120.27	49	178.86
Stu107	chr09	36614405	36614614	intron	PGSC0003DMG400018954	Disease resistance protein (NBS-LRR)	10.07	14.58	23.64
Stu108	chr09	44426305	44426703	exon	PGSC0003DMG400011353	F-box family protein	130.61	54.02	24.78
Stu109	chr09	50953304	50953534	exon	PGSC0003DMG401020585	Disease resistance protein (NB-ARC/LRR)	11.13	2.15	20.79
Stu110	chr09	50976845	50977033	exon	PGSC0003DMG403020585	Disease resistance protein (Tm-2^2)	8.48	0.96	25.63
Stu111	chr09	51006462	51006692	exon	PGSC0003DMG400024365	Disease resistance protein (Tm-2)	11.13	2.15	20.79
Stu112	chr09	51119003	51119191	exon	PGSC0003DMG401026432	Disease resistance protein (NB-ARC/LRR)	6.36	2.63	7.69
Stu113	chr09	52477097	52477369	exon	PGSC0003DMG400011898	Disease resistance protein	18.28	8.6	19.94
Stu114	chr09	52492423	52492653	exon	PGSC0003DMG400006581	Disease resistance protein	21.72	9.8	21.36
Stu115	chr09	52515543	52515773	intergenic	NA	NA	21.72	9.8	21.36
Stu116	chr09	52561675	52561905	exon	PGSC0003DMG400006570	Disease resistance protein	0.53	0.72	9.4
Stu117	chr10	1504396	1504584	exon	PGSC0003DMG400015107	Histone-lysine N-methyltransferase	13.51	2.15	1.71
Stu118	chr10	3490208	3490396	exon	PGSC0003DMG400021863	Disease resistance protein	9.8	0.72	12.25
Stu119	chr10	36849618	36850080	exon	PGSC0003DMG400014047	Cc-nbs-lrr resistance protein	32.85	17.69	45.85
Stu120	chr10	39864706	39865189	exon	PGSC0003DMG400016823	Disease resistance protein (NBS-LRR)	46.36	51.87	101.68
Stu121	chr10	39865253	39865441	exon	PGSC0003DMG400016823	Disease resistance protein (NBS-LRR)	16.16	22.94	39.02
Stu122	chr10	45962981	45963169	exon	PGSC0003DMG400008393	Disease resistance protein (NBS-LRR)	3.18	0.72	9.11
Stu123	chr10	46391813	46392001	exon	PGSC0003DMG400011111	Disease resistance protein (NBS-LRR)	3.71	0.48	7.69
Stu124	chr10	52162865	52163053	exon	PGSC0003DMG400008596	Cc-nbs-lrr resistance protein	3.44	0.96	6.55
Stu125	chr11	2935759	2936052	exon	PGSC0003DMG403016979	TIR-NBS-LRR resistance protein	22.25	13.62	7.4
Stu126	chr11	3020042	3020335	exon	PGSC0003DMG403016981	TIR-NBS-LRR resistance protein	18.54	7.41	14.53
Stu127	chr11	3235589	3235861	exon	PGSC0003DMG401015682	TIR-NBS-LRR resistance protein	26.49	28.2	23.92
Stu128	chr11	3455549	3455821	exon	PGSC0003DMG400015693	TIR-NBS-LRR resistance protein	32.85	6.69	22.78
Stu129	chr11	4346606	4346794	intergenic	NA	NA	3.18	0.96	4.84
Stu130	chr11	4869888	4870076	intergenic	NA	NA	21.46	19.12	52.97
Stu131	chr11	4870244	4870432	intergenic	NA	NA	20.66	20.32	57.82
Stu132	chr11	4887802	4887990	intergenic	NA	NA	38.41	21.27	89.14
Stu133	chr11	5847682	5847870	exon	PGSC0003DMG401001984	Disease resistance protein (BS2)	14.04	2.39	13.67
Stu134	chr11	5862475	5862916	exon	PGSC0003DMG400001983	Disease resistance protein	602.7	61.9	245.5
Stu135	chr11	5871524	5871712	exon	PGSC0003DMG400001981	Disease resistance protein	8.48	1.91	11.39
Stu136	chr11	5885300	5885534	intergenic	NA	NA	65.97	17.93	76.9
Stu137	chr11	5895653	5895841	intergenic	NA	NA	25.96	3.59	48.99
Stu138	chr11	5895979	5896209	intergenic	NA	NA	58.28	4.78	73.76
Stu139	chr11	5985404	5985697	exon	PGSC0003DMG400001996	Disease resistance protein	229.95	35.61	257.75
Stu140	chr11	9015777	9016218	exon	PGSC0003DMG400030207	Disease resistance protein (TMV resistance protein N)	2601.54	1426.17	2794.5
Stu141	chr11	12531548	12531799	exon	PGSC0003DMG400013938	Unknown protein	136.96	16.49	219.3
Stu142	chr11	14153833	14154063	exon	PGSC0003DMG400022881	Ankyrin repeat-containing protein	2.38	4.06	63.8
Stu143	chr11	27174241	27174429	intergenic	NA	NA	1.06	0.96	5.13
Stu144	chr11	35389067	35389318	exon	PGSC0003DMG400007344	Disease resistance protein (NBS-LRR)	29.67	55.21	55.25
Stu145	chr11	37507992	37508223	exon	PGSC0003DMG400019627	Disease resistance protein	32.32	1.91	70.92
Stu146	chr11	39222585	39222794	intergenic	NA	NA	60.93	71.7	27.91
Stu147	chr11	39899675	39899863	exon	PGSC0003DMG400018570	Cc-nbs-lrr resistance protein	63.58	22.71	54.4
Stu148	chr11	39912409	39912597	exon	PGSC0003DMG400018572	Disease resistance protein	6.89	3.11	17.09
Stu149	chr11	39939144	39939332	exon	PGSC0003DMG402018576	Disease resistance protein (I2)	27.29	13.38	43.86
Stu150	chr11	39947562	39947750	intergenic	NA	NA	5.03	4.06	14.24
Stu151	chr11	39989659	39989847	intergenic	NA	NA	16.69	8.84	28.48
Stu152	chr11	40695306	40695494	exon	PGSC0003DMG400002980	Disease resistance protein (NBS-LRR)	3.97	0.48	1.99
Stu153	chr11	41295197	41295385	exon	PGSC0003DMG402027371	Disease resistance protein	2.38	1.67	31.9
Stu154	chr12	744767	744955	exon	PGSC0003DMG400015348	NA	2.65	0.96	2.28
Stu155	chr12	1730340	1730528	exon	PGSC0003DMG400007870	Disease resistance protein (NBS-LRR)	15.37	0.72	5.41
Stu156	chr12	2657805	2657993	exon and intron	PGSC0003DMG401002909	Disease resistance protein (Cf2.1)	4.24	0	0.85
Stu157	chr12	2863293	2863584	exon	PGSC0003DMG400002885	"Receptor-like kinase, RLP"	547.86	73.85	1620.82
Stu158	chr12	6255415	6255603	exon	PGSC0003DMG400004296	Disease resistance protein	45.04	6.45	13.67
Stu159	chr12	6264969	6265199	exon	PGSC0003DMG400004295	Disease resistance protein	64.38	26.29	80.88
Stu160	chr12	6283250	6283438	exon	PGSC0003DMG400013898	"Receptor-like kinase, RLP"	10.33	0.24	6.27
Stu161	chr12	6871339	6871527	exon	PGSC0003DMG400013736	Cc-nbs-lrr resistance protein	11.39	0.72	8.83
Stu162	chr12	8086728	8086916	exon	PGSC0003DMG400027867	Disease resistance protein (NBS-LRR)	3.97	5.74	1.99
Stu163	chr12	9571092	9571280	exon	PGSC0003DMG400018903	Cc-nbs-lrr resistance protein	59.34	41.35	35.6
Stu164	chr12	31426933	31427395	intergenic	NA	NA	144.65	38.72	146.39
Stu165	chr12	56860488	56860824	exon	PGSC0003DMG401007575	Cc-nbs-lrr resistance protein	120.27	63.34	152.66
Stu166	chr12	63923411	63923599	exon	PGSC0003DMG400029415	TIR-NBS-LRR resistance protein	3.18	0.48	14.81
Stu167	chr12	65254308	65254496	intergenic	NA	NA	3.44	0.96	11.11
Stu168	chr12	65260294	65260482	intergenic	NA	NA	5.83	1.67	13.1
Stu169	chr12	65303323	65303553	intergenic	NA	NA	4.5	1.43	31.04
Stu170	chr12	65487427	65487615	intergenic	NA	NA	5.83	1.67	17.66
Stu171	chr12	65497897	65498169	intergenic	NA	NA	8.48	2.87	30.19
Stu172	chr12	67163993	67164181	exon	PGSC0003DMG400005542	"Receptor-like kinase, RLP"	3.44	0.24	0.85
Stu173	chr12	67177168	67177356	intergenic	NA	NA	5.3	0.24	1.42
Stu174	chr12	67731456	67731644	exon	PGSC0003DMG400004284	"Receptor-like kinase, RLP"	7.68	0.72	7.97
Stu175	PGSC0003DMT400005012	1120	1308	exon	PGSC0003DMT400005012	Disease resistance protein	4.24	0.24	7.69
Stu176	PGSC0003DMT400005012	1516	1704	exon	PGSC0003DMT400005012	Disease resistance protein	19.87	4.3	31.61
Stu177	PGSC0003DMT400005013	494	787	exon	PGSC0003DMT400005013	Disease resistance protein	328.77	36.09	125.31
Stu178	PGSC0003DMT400007707	644	832	exon	PGSC0003DMT400007707	Disease resistance protein (NBS-LRR)	17.22	15.54	33.04
Stu179	PGSC0003DMT400015396	1027	1215	exon	PGSC0003DMT400015396	TIR-NBS-LRR resistance protein	5.83	0	3.7
Stu180	PGSC0003DMT400018940	709	918	exon	PGSC0003DMT400018940	Disease resistance protein (R3a)	86.36	93.69	64.08
Stu181	PGSC0003DMT400020355	881	1069	exon	PGSC0003DMT400020355	Disease resistance protein	4.77	2.15	5.98
Stu182	PGSC0003DMT400028843	789	977	exon	PGSC0003DMT400028843	Cc-nbs-lrr resistance protein	1.85	0.48	3.13
Stu183	PGSC0003DMT400029711	707	1021	exon	PGSC0003DMT400029711	Cc-nbs-lrr resistance protein	12.19	8.6	15.95
Stu184	PGSC0003DMT400029711	1220	1450	exon	PGSC0003DMT400029711	Cc-nbs-lrr resistance protein	25.7	13.62	16.8
Stu185	PGSC0003DMT400035098	535	765	exon	PGSC0003DMT400035098	"Kinase, putative"	2.65	2.39	26.49
Stu186	PGSC0003DMT400036467	872	1060	exon	PGSC0003DMT400036467	Disease resistance protein (R3a)	38.94	27.49	70.06
Stu187	PGSC0003DMT400037873	2060	2311	exon	PGSC0003DMT400037873	Adenylyltransferase and sulfurtransferase MOCS3	211.94	87.24	425.21
Stu188	PGSC0003DMT400038169	1560	1790	exon	PGSC0003DMT400038169	Disease resistance protein (Hcr2-2A)	10.86	0	1.42
Stu189	PGSC0003DMT400042754	760	948	exon	PGSC0003DMT400042754	Cc-nbs-lrr resistance protein	1.06	0.48	3.99
Stu190	PGSC0003DMT400043300	1138	1326	exon	PGSC0003DMT400043300	TIR-NBS-LRR resistance protein	38.68	5.5	5.98
Stu191	PGSC0003DMT400047772	793	981	exon	PGSC0003DMT400047772	Disease resistance protein (NBS-LRR)	18.81	37.29	40.16
Stu192	PGSC0003DMT400047774	527	715	exon	PGSC0003DMT400047774	Disease resistance protein (I2)	60.4	70.03	28.77
Stu193	PGSC0003DMT400047775	2143	2331	exon	PGSC0003DMT400047775	Cc-nbs-lrr resistance protein	4.77	2.63	7.12
Stu194	PGSC0003DMT400050639	678	866	exon	PGSC0003DMT400050639	Cc-nbs-lrr resistance protein	20.93	24.62	16.52
Stu195	PGSC0003DMT400050639	1178	1366	exon	PGSC0003DMT400050639	Cc-nbs-lrr resistance protein	3.44	5.26	14.24
Stu196	PGSC0003DMT400050640	613	801	exon	PGSC0003DMT400050640	Cc-nbs-lrr resistance protein	20.93	12.91	34.18
Stu197	PGSC0003DMT400050640	1263	1493	exon	PGSC0003DMT400050640	Cc-nbs-lrr resistance protein	8.48	11.23	27.91
Stu198	PGSC0003DMT400051415	117	368	exon	PGSC0003DMT400051415	Disease resistance protein (NB-ARC/LRR)	203.99	77.68	180.57
Stu199	PGSC0003DMT400053053	719	907	exon	PGSC0003DMT400053053	Disease resistance protein (NB-ARC/LRR)	9.27	2.15	20.51
Stu200	PGSC0003DMT400053436	2471	2659	exon	PGSC0003DMT400053436	Disease resistance protein (NBS-LRR)	0.53	0	2.85
Stu201	PGSC0003DMT400062366	676	906	exon	PGSC0003DMT400062366	Disease resistance protein (PSH-RGH6)	3.71	1.2	3.99
Stu202	PGSC0003DMT400065650	155	343	exon	PGSC0003DMT400065650	Pectinacetylesterase	0	389.59	0
Stu203	PGSC0003DMT400070399	299	487	exon	PGSC0003DMT400070399	Disease resistance protein (I2)	2.38	1.67	31.9
Stu204	PGSC0003DMT400070533	311	520	exon	PGSC0003DMT400070533	Sentrin-specific protease	10.33	4.3	25.63
Stu205	PGSC0003DMT400075774	1456	1644	exon	PGSC0003DMT400075774	Disease resistance protein (NBS-LRR)	0	0.72	4.56
Stu206	PGSC0003DMT400076092	1304	1492	exon	PGSC0003DMT400076092	Disease resistance protein (NBS-LRR)	12.72	4.3	16.52
Stu207	PGSC0003DMT400077030	58	435	exon	PGSC0003DMT400077030	Disease resistance protein (NBS-LRR)	888.28	257.65	600.37
Stu208	PGSC0003DMT400079272	694	882	exon	PGSC0003DMT400079272	Disease resistance protein (NBS-LRR)	11.39	6.21	7.12
Stu209	PGSC0003DMT400082495	1366	1554	exon	PGSC0003DMT400082495	Disease resistance protein (NB-ARC/LRR)	9.54	3.35	8.26
Stu210	PGSC0003DMT400082496	1245	1433	exon	PGSC0003DMT400082496	Disease resistance protein (NBS-LRR)	6.09	3.82	3.7

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Control	Sulfate starvation	Phosphate starvation
Vca001	scaffold_1	4058699	4058887	intergenic	NA	NA	1.11	1.87	2.36
Vca002	scaffold_1	4061286	4061558	intergenic	NA	NA	6.91	7.11	7.46
Vca003	scaffold_1	9648486	9648674	intergenic	NA	NA	4.53	4.81	6.64
Vca004	scaffold_11	3070517	3070789	intergenic	NA	NA	65.84	32.02	9.45
Vca005	scaffold_14	1441131	1441319	exon	Vocar20007450m.g	glycosyltransferase	1.56	1.65	1.11
Vca006	scaffold_16	756466	756654	intergenic	NA	NA	10.33	13.28	15.65
Vca007	scaffold_18	2139632	2139820	exon	Vocar20000099m.g	Unknown protein	0.89	1.94	0.96
Vca008	scaffold_21	925976	926164	intergenic	NA	NA	0.67	0.65	0.52
Vca009	scaffold_21	930034	930222	intergenic	NA	NA	0.97	1.36	0.22
Vca010	scaffold_22	1293463	1293651	intergenic	NA	NA	1.11	0.86	0.15
Vca011	scaffold_23	1437608	1437796	intergenic	NA	NA	1.04	1.51	0.74
Vca012	scaffold_26	538464	538652	intergenic	NA	NA	12.11	14.29	23.77
Vca013	scaffold_3	2608325	2608513	intergenic	NA	NA	11.37	12.06	10.41
Vca014	scaffold_3	2611234	2611422	intergenic	NA	NA	11.52	12.35	10.71
Vca015	scaffold_32	191336	191566	intergenic	NA	NA	108.5	159.08	182.5
Vca016	scaffold_43	254480	254668	exon and intron	Vocar20011143m.g	Fe-assimilating protein 1	0.59	0.79	0.15
Vca017	scaffold_7	646794	646982	intergenic	NA	NA	46.97	71.79	25.03
Vca018	scaffold_78	227615	227803	exon	Vocar20007037m.g	MYB domain protein	0.89	1.15	0.44
Vca019	scaffold_78	235198	235386	intergenic	NA	NA	0.89	1.22	0.44
Vca020	scaffold_8	151585	151773	intergenic	NA	NA	3.12	2.51	3.17
Vca021	scaffold_8	521864	522052	intergenic	NA	NA	2.45	2.58	0.89
Vca022	scaffold_80	99017	99205	exon and intron	Vocar20005265m.g	Unknown protein	39.24	41.85	63.86
Vca023	scaffold_83	103954	104142	intergenic	NA	NA	38.42	60.66	34.92
Vca024	scaffold_86	20231	20419	intergenic	NA	NA	9.07	6.1	1.4
Vca025	scaffold_94	50	238	intergenic	NA	NA	0.89	1.08	0.37
Vca026	Vocar20012864m	991	1179	exon	Vocar20012864m	NA	32.1	32.88	19.12
Vca027	Vocar20015074m	807	1079	exon	Vocar20015074m	NA	10.33	10.98	20.75

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Flower	Fruit
Vvi001	chr1	901802	901990	exon	GSVIVG01012165001	Cc-nbs-lrr resistance protein	9.09	132.84	14.67
Vvi002	chr1	902295	902568	exon	GSVIVG01012165001	Cc-nbs-lrr resistance protein	16.15	241.37	56.6
Vvi003	chr1	918087	918296	exon and intron	GSVIVG01012164001	VACUOLAR SORTING RECEPTOR 6	15.82	355.23	51.7
Vvi004	chr1	974419	974607	exon	GSVIVG01012157001	Disease resistance protein (NBS-LRR)	23.22	1.78	5.59
Vvi005	chr1	2961352	2961666	intergenic	NA	TAS4c	128.55	6.52	0.7
Vvi006	chr1	8079906	8080094	exon	GSVIVG01013735001	MYB domain protein	10.77	23.13	0
Vvi007	chr1	10110781	10111011	intergenic	NA	NA	42.4	20.16	104.11
Vvi008	chr1	13357133	13357321	intergenic	NA	NA	401.8	82.43	125.77
Vvi009	chr10	781074	781283	exon	GSVIVG01012697001	DNA repair protein rad16	0	0	29.35
Vvi010	chr10	1463825	1464097	intron	GSVIVG01021101001	Unknown protein	1279.44	341.59	205.42
Vvi011	chr10	7890428	7890701	intergenic	NA	NA	1266.32	680.82	1934.74
Vvi012	chr10	13072563	13072751	exon	GSVIVG01026152001	Cc-nbs-lrr resistance protein	13.12	7.12	41.22
Vvi013	chr10	13072813	13073043	exon	GSVIVG01026152001	Cc-nbs-lrr resistance protein	12.45	7.12	49.61
Vvi014	chr10	13235020	13235208	exon	GSVIVG01026162001	Cc-nbs-lrr resistance protein	26.25	10.08	70.57
Vvi015	chr10	13235459	13235647	exon	GSVIVG01026162001	Cc-nbs-lrr resistance protein	9.42	4.74	34.94
Vvi016	chr10	13369292	13369480	intron	GSVIVG01026170001	NA	28.6	2.97	25.85
Vvi017	chr10	14211687	14211959	intergenic	NA	NA	0	0	1849.5
Vvi018	chr11	1508122	1508520	exon	GSVIVG01015167001	Disease resistance protein	310.27	45.66	24.46
Vvi019	chr11	1760398	1760586	intron	GSVIVG01015198001	Serine/threonine protein kinase like	8.75	0.59	0.7
Vvi020	chr11	5689375	5689605	intergenic	NA	NA	14.47	4.74	4.19
Vvi021	chr11	17366855	17367254	exon	GSVIVG01029299001	Cc-nbs-lrr resistance protein	117.11	55.75	57.29
Vvi022	chr11	17377819	17378218	exon	GSVIVG01029297001	Cc-nbs-lrr resistance protein	117.11	55.75	57.99
Vvi023	chr11	17604492	17604680	exon and intron	GSVIVG01029283001	Calcium-transporting ATPase 1	12.79	4.74	2.79
Vvi024	chr11	17605865	17606053	exon and intron	GSVIVG01029283001	Calcium-transporting ATPase 1	64.95	5.93	14.67
Vvi025	chr12	1746880	1747068	exon and intron	GSVIVG01020805001	Auxin response factor 3	19.52	3.56	2.79
Vvi026	chr12	6340409	6340597	intergenic	NA	TAS3	4856.97	445.38	49.61
Vvi027	chr12	6920302	6920595	exon and intron	GSVIVG01030586001	F-box family protein	5.05	1.19	55.2
Vvi028	chr12	8679934	8680206	exon and intron	GSVIVG01003099001	Actin	17.84	14.83	1.4
Vvi029	chr12	11524675	11524926	exon	GSVIVG01013307001	Cc-nbs-lrr resistance protein	234.22	52.78	30.04
Vvi030	chr12	11525369	11525557	exon	GSVIVG01013307001	Cc-nbs-lrr resistance protein	97.59	45.66	59.39
Vvi031	chr12	11663280	11663615	exon	GSVIVG01013310001	Disease resistance protein (NBS-LRR)	417.96	42.7	178.87
Vvi032	chr12	17317817	17318005	exon and intron	GSVIVG01022984001	TIR-NBS-LRR resistance protein	6.73	0.59	18.17
Vvi033	chr12	17507375	17507773	exon	GSVIVG01022965001	Cc-nbs-lrr resistance protein	45.09	16.61	4.19
Vvi034	chr12	17515277	17515465	exon	GSVIVG01022963001	Cc-nbs-lrr resistance protein	79.42	7.12	27.25
Vvi035	chr12	17531663	17532019	intron	GSVIVG01022962001	Cc-nbs-lrr resistance protein	144.37	63.46	117.38
Vvi036	chr12	17549689	17550003	exon and intron	GSVIVG01022961001	Disease resistance protein (NBS-LRR)	80.43	8.3	29.35
Vvi037	chr12	17721785	17721973	exon and intron	GSVIVG01022947001	Disease resistance protein (NBS-LRR)	10.43	2.97	9.08
Vvi038	chr12	17722319	17722528	exon	GSVIVG01022947001	Disease resistance protein (NBS-LRR)	124.51	23.13	83.15
Vvi039	chr12	17778553	17778741	exon	GSVIVG01022941001	Cc-nbs-lrr resistance protein	58.55	18.38	24.46
Vvi040	chr12	17799679	17799909	intron	GSVIVG01022939001	Cc-nbs-lrr resistance protein	76.73	14.23	32.14
Vvi041	chr12	17811955	17812143	exon	GSVIVG01022937001	Cc-nbs-lrr resistance protein	24.23	1.19	2.79
Vvi042	chr12	17879809	17879997	exon and intron	GSVIVG01022931001	Cc-nbs-lrr resistance protein	6.73	1.78	1.4
Vvi043	chr12	18227625	18227834	exon	GSVIVG01022892001	Cc-nbs-lrr resistance protein	12.11	4.15	0.7
Vvi044	chr12	18377468	18377677	exon	GSVIVG01022884001	Unknown protein	0	0	70.57
Vvi045	chr12	18904758	18904946	exon and intron	GSVIVG01022837001	Disease resistance protein (NB-ARC/LRR)	10.1	0	0.7
Vvi046	chr12	19000779	19001031	exon	GSVIVG01022828001	Cc-nbs-lrr resistance protein	24.57	15.42	33.54
Vvi047	chr12	19001192	19001380	intergenic	NA	NA	11.11	5.34	14.67
Vvi048	chr12	19750512	19750847	intron	GSVIVG01023324001	Cc-nbs-lrr resistance protein	841.97	260.94	180.97
Vvi049	chr12	19770348	19770536	exon and intron	GSVIVG01023320001	Disease resistance protein (NBS-LRR)	4.04	7.71	18.87
Vvi050	chr12	19771106	19771399	exon and intron	GSVIVG01023319001	Cc-nbs-lrr resistance protein	39.37	15.42	55.9
Vvi051	chr12	19795988	19796176	exon	GSVIVG01023312001	Cc-nbs-lrr resistance protein	7.4	7.71	14.67
Vvi052	chr12	19796215	19796445	exon	GSVIVG01023312001	Cc-nbs-lrr resistance protein	228.16	161.31	241.76
Vvi053	chr12	20219958	20220188	exon	GSVIVG01023277001	Cc-nbs-lrr resistance protein	115.76	119.8	245.95
Vvi054	chr12	20918667	20918918	intergenic	NA	NA	30.62	1.78	1.4
Vvi055	chr12	21887952	21888161	exon	GSVIVG01023153001	Methyltransferase (Cytosine-specific)	0	0	1296.82
Vvi056	chr13	460464	460652	exon	GSVIVG01032827001	Disease resistance protein	12.11	3.56	13.97
Vvi057	chr13	474598	474786	exon	GSVIVG01032824001	Disease resistance protein	13.8	4.15	6.29
Vvi058	chr13	3641153	3641341	exon and intron	GSVIVG01016464001	Folylpolyglutamate synthase	2.02	11.86	6.99
Vvi059	chr13	7495485	7495988	exon	GSVIVG01034675001	Cc-nbs-lrr resistance protein	926.44	1334.95	635.13
Vvi060	chr13	7819712	7819942	intergenic	NA	NA	192.83	40.33	69.17
Vvi061	chr13	9275301	9275615	exon and intron	GSVIVG01011193001	Cc-nbs-lrr resistance protein	631.65	392.6	325.6
Vvi062	chr13	15492450	15492638	intergenic	NA	NA	25274.24	13838.74	13400.67
Vvi063	chr13	19162733	19162963	exon and intron	GSVIVG01036610001	Disease resistance protein (NBS-LRR)	38.36	7.71	20.96
Vvi064	chr13	19254521	19254751	exon and intron	GSVIVG01036614001	Disease resistance protein (NBS-LRR)	30.29	8.3	14.67
Vvi065	chr13	19255155	19255364	exon and intron	GSVIVG01036614001	Disease resistance protein (NBS-LRR)	83.12	34.4	96.42
Vvi066	chr13	19271045	19271233	intron	GSVIVG01036616001	"Nuclear matrix protein, putative"	46.1	11.27	23.06
Vvi067	chr13	19379880	19380131	exon	GSVIVG01036628001	Disease resistance protein (NBS-LRR)	94.9	38.55	111.1
Vvi068	chr13	19927223	19927453	exon and intron	GSVIVG01036657001	Cc-nbs-lrr resistance protein	25.24	11.27	15.37
Vvi069	chr13	19948394	19948708	exon and intron	GSVIVG01036660001	Cc-nbs-lrr resistance protein	41.39	11.86	7.69
Vvi070	chr13	20220935	20221628	exon and intron	GSVIVG01000634001	Disease resistance protein (NBS-LRR)	354.35	49.82	199.13
Vvi071	chr13	20235088	20235402	exon	GSVIVG01000635001	Disease resistance protein (NBS-LRR)	249.36	91.33	151.62
Vvi072	chr13	20248268	20248456	intron	GSVIVG01000635001	Disease resistance protein (NBS-LRR)	159.17	58.71	74.06
Vvi073	chr13	20307179	20307472	exon and intron	GSVIVG01000641001	Transposon protein (Ty1-H Gag-Pol polyprotein)	41.39	6.52	26.55
Vvi074	chr13	20331529	20331843	exon	GSVIVG01000643001	Unknown protein	234.55	82.43	131.36
Vvi075	chr13	20361457	20361939	intron	GSVIVG01000646001	Cc-nbs-lrr resistance protein	474.83	88.36	152.32
Vvi076	chr13	20465538	20465726	intron	GSVIVG01000656001	Cc-nbs-lrr resistance protein	51.49	18.38	19.56
Vvi077	chr13	20532418	20532606	exon and intron	GSVIVG01000663001	Disease resistance protein (NBS-LRR)	17.16	6.52	19.56
Vvi078	chr13	20532703	20532891	exon and intron	GSVIVG01000663001	Disease resistance protein (NBS-LRR)	37.35	15.42	51.01
Vvi079	chr13	20552213	20552401	intron	GSVIVG01000665001	Disease resistance protein (NBS-LRR)	11.44	4.15	15.37
Vvi080	chr13	21106293	21106544	exon and intron	GSVIVG01001448001	Cc-nbs-lrr resistance protein	256.43	367.1	215.9
Vvi081	chr13	21288586	21288774	intergenic	NA	NA	5.72	0.59	0.7
Vvi082	chr13	21293057	21293434	intergenic	NA	NA	308.59	26.69	99.92
Vvi083	chr13	21319619	21319807	exon and intron	GSVIVG01001469001	Cc-nbs-lrr resistance protein	196.86	18.98	64.98
Vvi084	chr13	21319871	21320059	intron	GSVIVG01001469001	Cc-nbs-lrr resistance protein	33.99	1.78	6.29
Vvi085	chr13	21365400	21365588	exon and intron	GSVIVG01001471001	Disease resistance protein (NBS-LRR)	67.3	20.16	53.8
Vvi086	chr13	21366328	21366558	exon and intron	GSVIVG01001471001	Disease resistance protein (NBS-LRR)	56.2	23.72	32.14
Vvi087	chr13	21381704	21381934	intron	GSVIVG01001473001	Disease resistance protein (NBS-LRR)	22.88	11.86	23.06
Vvi088	chr13	21507221	21507409	exon	GSVIVG01032210001	Disease resistance protein (NBS-LRR)	11.78	10.08	38.43
Vvi089	chr13	21531429	21531743	exon	GSVIVG01032210001	Disease resistance protein (NBS-LRR)	486.94	77.69	144.63
Vvi090	chr13	21550651	21551427	intergenic	NA	NA	1500.87	227.14	312.33
Vvi091	chr13	21592565	21592753	intron	GSVIVG01032201001	Cc-nbs-lrr resistance protein	4.37	24.31	39.13
Vvi092	chr13	21593565	21593753	exon and intron	GSVIVG01032201001	Cc-nbs-lrr resistance protein	267.87	46.85	95.72
Vvi093	chr13	21720325	21720702	exon	GSVIVG01032189001	Cc-nbs-lrr resistance protein	398.1	65.83	127.86
Vvi094	chr13	21762091	21762279	exon and intron	GSVIVG01032183001	Cc-nbs-lrr resistance protein	83.79	7.12	10.48
Vvi095	chr13	21781368	21781871	exon and intron	GSVIVG01032180001	Disease resistance protein (NBS-LRR)	577.13	132.25	256.43
Vvi096	chr13	21842478	21842666	exon and intron	GSVIVG01032171001	Disease resistance protein (NBS-LRR)	38.03	6.52	12.58
Vvi097	chr13	21868474	21868662	exon and intron	GSVIVG01032169001	Disease resistance protein (NBS-LRR)	27.59	4.15	10.48
Vvi098	chr13	22093157	22093345	exon and intron	GSVIVG01032150001	Disease resistance protein (NBS-LRR)	11.44	0.59	6.99
Vvi099	chr13	22094792	22095022	intron	GSVIVG01032150001	Disease resistance protein (NBS-LRR)	11.44	1.78	5.59
Vvi100	chr13	22120990	22121199	intergenic	NA	NA	8.75	4.74	0
Vvi101	chr13	22241348	22241536	exon	GSVIVG01032141001	Disease resistance protein (NBS-LRR)	15.14	5.93	0.7
Vvi102	chr13	22626866	22627117	intergenic	NA	NA	7.74	1.19	1.4
Vvi103	chr13	22659338	22659526	intergenic	NA	NA	12.11	1.19	0
Vvi104	chr13	23061440	23061649	intergenic	NA	NA	12.11	26.69	13.28
Vvi105	chr13	23678889	23679329	exon and intron	GSVIVG01031998001	Disease resistance protein (NBS-LRR)	75.72	12.45	30.74
Vvi106	chr13	23695569	23695757	intron	GSVIVG01031993001	Disease resistance protein (NB-ARC/LRR)	407.52	236.63	166.29
Vvi107	chr13	23695991	23696200	exon and intron	GSVIVG01031993001	Disease resistance protein (NB-ARC/LRR)	92.21	38.55	51.01
Vvi108	chr13	23702581	23702811	exon	GSVIVG01031992001	Cc-nbs-lrr resistance protein	265.51	128.1	116.69
Vvi109	chr13	23703025	23703402	exon and intron	GSVIVG01031992001	Cc-nbs-lrr resistance protein	232.53	143.52	85.24
Vvi110	chr13	24112912	24113415	exon and intron	GSVIVG01001382001	Cc-nbs-lrr resistance protein	335.85	246.11	197.04
Vvi111	chr13	24166863	24167051	exon and intron	GSVIVG01001391001	Unknown protein	81.44	34.4	32.84
Vvi112	chr13	24167840	24168070	exon	GSVIVG01001391001	Unknown protein	208.31	102.6	79.65
Vvi113	chr13	24217994	24218371	exon and intron	GSVIVG01001399001	Kinase-like protein	303.54	215.87	181.67
Vvi114	chr13_random	518414	518602	exon and intron	GSVIVG01012406001	NA	42.06	13.05	31.44
Vvi115	chr13_random	520689	520877	exon	GSVIVG01012407001	Cc-nbs-lrr resistance protein	23.22	14.23	12.58
Vvi116	chr13_random	611874	612062	exon	GSVIVG01012421001	Cc-nbs-lrr resistance protein	21.54	7.71	14.67
Vvi117	chr13_random	741777	742028	exon and intron	GSVIVG01012435001	NA	94.56	34.4	33.54
Vvi118	chr13_random	742143	742331	exon and intron	GSVIVG01012436001	Disease resistance protein (NB-ARC/LRR)	20.86	11.27	27.95
Vvi119	chr13_random	839229	839585	exon and intron	GSVIVG01012443001	Cc-nbs-lrr resistance protein	191.14	74.13	91.53
Vvi120	chr13_random	2459111	2459320	exon and intron	GSVIVG01013533001	Cc-nbs-lrr resistance protein	51.49	7.71	39.13
Vvi121	chr13_random	2504453	2504815	intron	GSVIVG01013535001	Cc-nbs-lrr resistance protein	328.78	140.55	234.07
Vvi122	chr13_random	2531765	2531953	intergenic	NA	NA	5.72	1.19	0
Vvi123	chr13_random	2555929	2556243	intergenic	NA	NA	252.73	110.9	162.1
Vvi124	chr13_random	2762034	2762285	intron	GSVIVG01000840001	Cc-nbs-lrr resistance protein	62.93	15.42	126.47
Vvi125	chr13_random	2821627	2821815	exon	GSVIVG01000842001	Cc-nbs-lrr resistance protein	49.8	13.05	17.47
Vvi126	chr13_random	2821881	2822132	intergenic	NA	NA	132.59	75.32	88.04
Vvi127	chr13_random	3259119	3259328	exon	GSVIVG01000871001	Disease resistance protein (NB-ARC/LRR)	21.87	11.86	23.06
Vvi128	chr14	4389672	4389881	intergenic	NA	NA	17.16	7.12	28.65
Vvi129	chr14	4503759	4503947	intergenic	NA	NA	7.4	4.74	19.56
Vvi130	chr14	5098915	5099124	exon	GSVIVG01021955001	Disease resistance protein (NB-ARC/LRR)	51.82	81.25	76.86
Vvi131	chr14	5275180	5275599	exon	GSVIVG01021948001	Cc-nbs-lrr resistance protein	159.17	77.1	94.33
Vvi132	chr14	5311861	5312049	intergenic	NA	NA	101.97	70.57	82.45
Vvi133	chr14	5391737	5392051	intergenic	NA	NA	120.47	77.1	92.23
Vvi134	chr14	5563765	5563953	exon	GSVIVG01021920001	Disease resistance protein (NB-ARC/LRR)	6.06	4.15	3.49
Vvi135	chr14	5679172	5679360	intergenic	NA	NA	40.72	10.67	4.89
Vvi136	chr14	5734560	5734874	exon	GSVIVG01021910001	Transport inhibitor response1 (TIR1/Auxin F-box)	253.06	236.03	941.87
Vvi137	chr14	7643289	7644128	intergenic	NA	NA	10665.62	2673.45	2414.06
Vvi138	chr14	9704570	9704758	exon	GSVIVG01023557001	NA	12.45	1.78	8.38
Vvi139	chr14	9839144	9839395	intergenic	NA	NA	22.55	4.15	10.48
Vvi140	chr14	10959171	10959380	intergenic	NA	NA	128.55	35.58	117.38
Vvi141	chr14	14600840	14601068	intergenic	NA	NA	128.55	52.19	41.22
Vvi142	chr14	14601616	14601804	intergenic	NA	NA	55.19	7.71	11.88
Vvi143	chr14	18829908	18830096	intergenic	NA	NA	49.47	25.5	37.03
Vvi144	chr14	21534505	21534924	intergenic	NA	TAS4b	82997.96	39408.54	1218.56
Vvi145	chr14	21607834	21608106	intergenic	NA	TAS4a	14818.26	17945	2564.99
Vvi146	chr14	23226974	23227162	intergenic	NA	NA	184.08	320.25	283.68
Vvi147	chr14	25059897	25060274	exon and intron	GSVIVG01033011001	AUXIN SIGNALING F-BOX	314.31	183.25	541.5
Vvi148	chr14	27708246	27708434	exon and intron	GSVIVG01032467001	MYB domain protein	173.64	392	30.04
Vvi149	chr15	5308737	5309051	intron	GSVIVG01026711001	TIR-NBS-LRR resistance protein	55.86	15.42	14.67
Vvi150	chr15	5767862	5768071	intergenic	NA	NA	27.26	11.27	80.35
Vvi151	chr15	5768198	5768428	intergenic	NA	NA	31.97	4.15	31.44
Vvi152	chr15	8296977	8297165	exon	GSVIVG01011311001	Unknown protein	221.43	60.49	98.52
Vvi153	chr15	9394653	9394841	intron	GSVIVG01018415001	Cc-nbs-lrr resistance protein	7.07	2.97	6.99
Vvi154	chr15	9398057	9398245	intergenic	NA	NA	6.73	9.49	11.88
Vvi155	chr15	10444528	10444716	intergenic	NA	NA	0	10.67	554.78
Vvi156	chr15	10444802	10445032	intergenic	NA	NA	0	3.56	289.27
Vvi157	chr15	13376114	13376302	intergenic	NA	NA	1872.73	2309.32	3712.28
Vvi158	chr15	19455606	19455836	exon	GSVIVG01026910001	Cc-nbs-lrr resistance protein	51.49	39.73	103.41
Vvi159	chr15	19501412	19501600	intergenic	NA	NA	105.67	157.16	200.53
Vvi160	chr15	19506313	19506522	intergenic	NA	NA	6.06	2.97	5.59
Vvi161	chr15	19529045	19529275	exon	GSVIVG01026903001	Disease resistance protein (NBS-LRR)	24.9	11.27	50.31
Vvi162	chr15	19542996	19543184	intron	GSVIVG01026903001	Disease resistance protein (NBS-LRR)	19.52	24.91	24.46
Vvi163	chr15	19543216	19543446	intron	GSVIVG01026903001	Disease resistance protein (NBS-LRR)	36.34	55.15	85.94
Vvi164	chr15	19673000	19673272	exon	GSVIVG01026881001	Pentatricopeptide repeat-containing protein	15.14	1.78	4.89
Vvi165	chr15	19823942	19824235	exon and intron	GSVIVG01026863001	Unknown protein	42.74	24.91	14.67
Vvi166	chr16	3971031	3971219	intergenic	NA	NA	0	0	81.75
Vvi167	chr17	4727005	4727256	intron	GSVIVG01008201001	Disease resistance protein	26.92	5.34	4.89
Vvi168	chr17	4727510	4727719	exon	GSVIVG01008201001	Disease resistance protein	25.58	16.01	14.67
Vvi169	chr17	9703499	9703813	exon	GSVIVG01007740001	MYB domain protein	3143.76	1126.2	427.61
Vvi170	chr18	2440432	2440620	exon and intron	GSVIVG01008819001	zinc finger protein (C2H2-type)	208.31	103.19	37.73
Vvi171	chr18	2441939	2442127	intergenic	NA	NA	67.98	11.27	11.88
Vvi172	chr18	4099952	4100161	exon	GSVIVG01008991001	acetyl-CoA carboxylase 1 like	7.74	0.59	1.4
Vvi173	chr18	5500153	5500425	exon	GSVIVG01009146001	Cc-nbs-lrr resistance protein	298.49	267.46	242.45
Vvi174	chr18	20665161	20665581	intron	GSVIVG01034480001	Unknown protein	9404.35	1444.66	3722.76
Vvi175	chr18	21749841	21750113	intergenic	NA	NA	12.45	1.19	9.78
Vvi176	chr18	21751151	21751339	intergenic	NA	NA	23.56	4.15	57.29
Vvi177	chr18	21789465	21789758	intergenic	NA	NA	31.3	2.37	70.57
Vvi178	chr18	21791192	21791401	intergenic	NA	NA	2.02	0	30.04
Vvi179	chr18	21963324	21963533	exon	GSVIVG01034812001	TIR-NBS-LRR resistance protein	14.81	0.59	8.38
Vvi180	chr18	23149296	23149570	exon	GSVIVG01012796001	TIR-NBS-LRR resistance protein	26.58	1.78	14.67
Vvi181	chr18	23699958	23700335	intergenic	NA	NA	140.66	68.79	88.74
Vvi182	chr18	24470271	24470711	intergenic	NA	NA	134.27	0.59	10.48
Vvi183	chr18	24579608	24579796	exon	GSVIVG01026101001	TIR-NBS-LRR resistance protein	51.15	3.56	53.1
Vvi184	chr18	25983625	25983876	exon	GSVIVG01026003001	TIR-NBS-LRR resistance protein	130.23	20.16	42.62
Vvi185	chr18	26222312	26222563	intergenic	NA	NA	33.32	12.45	17.47
Vvi186	chr18	26262817	26263005	intergenic	NA	NA	21.54	16.61	12.58
Vvi187	chr18	26359937	26360188	intergenic	NA	NA	18.17	8.3	13.97
Vvi188	chr18	26467504	26467734	intergenic	NA	NA	7.4	0	3.49
Vvi189	chr18	26581778	26581966	exon	GSVIVG01025958001	TIR-NBS-LRR resistance protein	28.94	5.93	30.74
Vvi190	chr18	27321751	27321981	intron	GSVIVG01025911001	Protein DA1-related 1 Ubiquitin receptor	13.46	6.52	35.63
Vvi191	chr18	27731486	27731674	intergenic	NA	NA	8.08	6.52	17.47
Vvi192	chr18	27848569	27848757	exon	GSVIVG01037219001	TIR-NBS-LRR resistance protein	6.06	4.15	39.13
Vvi193	chr18	28294800	28294988	exon and intron	GSVIVG01037177001	Unknown protein	1830.66	309.57	206.82
Vvi194	chr18	28295368	28295577	exon and intron	GSVIVG01037177001	Unknown protein	119.46	17.79	22.36
Vvi195	chr18	28316223	28316411	intergenic	NA	NA	6.39	1.78	3.49
Vvi196	chr18	28346466	28346654	intergenic	NA	NA	24.57	5.34	23.06
Vvi197	chr18	28430568	28430777	intergenic	NA	NA	31.97	4.74	5.59
Vvi198	chr18_random	3451321	3451509	exon	GSVIVG01036294001	TIR-NBS-LRR resistance protein	32.98	8.3	15.37
Vvi199	chr18_random	4631515	4631859	exon	GSVIVG01036400001	TIR-NBS-LRR resistance protein	558.96	93.7	150.22
Vvi200	chr18_random	4747480	4747794	exon	GSVIVG01036408001	TIR-NBS-LRR resistance protein	64.28	14.83	30.04
Vvi201	chr19	909106	909336	exon	GSVIVG01014155001	Disease resistance protein (NBS-LRR)	20.53	12.45	22.36
Vvi202	chr19	5419955	5420143	intergenic	NA	NA	35.33	7.12	9.08
Vvi203	chr19	5420354	5420899	intergenic	NA	NA	296.81	97.26	188.65
Vvi204	chr19	5434361	5434549	exon	GSVIVG01014595001	Cc-nbs-lrr resistance protein	946.29	83.03	205.42
Vvi205	chr19	5440159	5440347	exon	GSVIVG01014596001	Disease resistance protein (NB-ARC/LRR)	30.62	9.49	7.69
Vvi206	chr19	5719071	5719448	exon	GSVIVG01014613001	Ankyrin repeat-containing protein	335.17	249.67	602.29
Vvi207	chr19	6371070	6371258	exon	GSVIVG01037631001	Cc-nbs-lrr resistance protein	68.99	29.65	26.55
Vvi208	chr19	6371494	6371724	exon	GSVIVG01037631001	Cc-nbs-lrr resistance protein	31.3	4.15	8.38
Vvi209	chr19	7107824	7108012	exon	GSVIVG01037703001	GDP-D-glucose phosphorylase 1	7.74	0	0
Vvi210	chr19	20318694	20318924	intergenic	NA	NA	69.32	8.3	4.19
Vvi211	chr19	21138080	21138268	intergenic	NA	NA	10.77	0.59	4.19
Vvi212	chr19	21873282	21873533	exon and intron	GSVIVG01020287001	Unknown protein	19.18	4.15	18.87
Vvi213	chr19	22007459	22007647	intergenic	NA	NA	4.37	0.59	0.7
Vvi214	chr19	22023463	22023651	intron	GSVIVG01020273001	Disease resistance protein	4.37	0.59	0.7
Vvi215	chr19	22055514	22055702	intergenic	NA	NA	4.37	0.59	0.7
Vvi216	chr19	22774464	22774757	intergenic	NA	NA	3471.19	1948.75	2467.86
Vvi217	chr19	22782334	22782732	intergenic	NA	NA	1179.5	369.47	587.62
Vvi218	chr19	22800741	22800971	intergenic	NA	NA	899.85	349.3	832.17
Vvi219	chr19	22802066	22802401	intergenic	NA	NA	197.54	36.77	53.8
Vvi220	chr19	22806888	22807118	exon	GSVIVG01036767001	Cc-nbs-lrr resistance protein	53.17	11.86	26.55
Vvi221	chr19	22820528	22820821	intergenic	NA	NA	455.98	282.29	2013
Vvi222	chr19	22847582	22848169	exon and intron	GSVIVG01036764001	Unknown protein	8792.22	3661.47	3962.42
Vvi223	chr2	2098541	2098729	exon and intron	GSVIVG01019630001	"Kinase, putative"	5.72	1.78	0.7
Vvi224	chr2	3928831	3929019	exon	GSVIVG01019860001	AP2 domain transcription factor	8.41	0.59	0.7
Vvi225	chr2	4083612	4083800	exon and intron	GSVIVG01019870001	SPX domain-containing protein	22.88	3.56	13.97
Vvi226	chr2	10510846	10511034	exon and intron	GSVIVG01012993001	Disease resistance protein (NB-ARC/LRR)	91.2	56.93	66.38
Vvi227	chr2	14625321	14625509	exon and intron	GSVIVG01022680001	Sentrin-specific protease 2	101.63	90.74	202.63
Vvi228	chr2	14625768	14625956	exon and intron	GSVIVG01022680001	Sentrin-specific protease 2	405.17	489.86	1140.3
Vvi229	chr2	15290023	15290211	intergenic	NA	NA	0	0	18.87
Vvi230	chr2	15291103	15291291	intergenic	NA	NA	0	0	130.66
Vvi231	chr2	15634022	15634210	intergenic	NA	NA	0	0	161.4
Vvi232	chr2	15791823	15792011	intergenic	NA	NA	0	0	350.06
Vvi233	chr2	16461955	16462185	intergenic	NA	NA	0	0	274.6
Vvi234	chr3	2032020	2032208	intergenic	NA	NA	6.06	4.74	4.19
Vvi235	chr3	2678934	2679122	exon	GSVIVG01023885001	Pentatricopeptide repeat-containing protein	10.43	0.59	1.4
Vvi236	chr3	2772921	2773109	exon and intron	GSVIVG01023876001	Bromodomain (BSD) Containing Protein	0	0	12.58
Vvi237	chr3	4819194	4819382	exon	GSVIVG01031844001	COSII_At2g15890-like protein	4.37	4.15	0
Vvi238	chr3	11748539	11748727	intergenic	NA	NA	214.03	68.2	215.9
Vvi239	chr3	15519007	15519195	intergenic	NA	NA	23.22	0	2.79
Vvi240	chr3	16054701	16054994	intergenic	NA	NA	0	0	109.7
Vvi241	chr4	3368518	3368811	exon	GSVIVG01035690001	BURP domain protein	0	1129.16	1356.21
Vvi242	chr4	10447618	10447806	exon and intron	GSVIVG01035205001	Auxin response factor	5.05	1.19	1.4
Vvi243	chr4	16872356	16872544	intergenic	NA	NA	562.32	169.61	126.47
Vvi244	chr4	16872989	16873177	intergenic	NA	NA	168.26	65.83	41.22
Vvi245	chr4	18941426	18941808	exon and intron	GSVIVG01018889001	Cc-nbs-lrr resistance protein	116.44	67.61	85.94
Vvi246	chr4	23621780	23621968	exon and intron	GSVIVG01026440001	Elongation factor EF-2	19.85	8.9	11.88
Vvi247	chr5	229384	229572	intron	GSVIVG01034933001	Stress responsive alpha-beta barrel domain protein	79.42	29.06	61.49
Vvi248	chr5	2019514	2019744	intron	GSVIVG01017613001	Serologically defined colon cancer antigen-like protein	49.13	126.32	209.61
Vvi249	chr5	2126624	2126854	intergenic	NA	NA	48.12	125.13	208.92
Vvi250	chr5	2163245	2163475	intergenic	NA	NA	40.72	119.2	195.64
Vvi251	chr5	5500251	5500439	exon and intron	GSVIVG01018015001	Pentatricopeptide repeat-containing protein	9.09	144.7	37.73
Vvi252	chr5	6034330	6034518	intron	GSVIVG01018063001	Calcium-transporting ATPase 1	26.92	1.78	1.4
Vvi253	chr5	10722832	10723041	exon	GSVIVG01029013001	TIR-NBS-LRR resistance protein	270.22	39.14	125.77
Vvi254	chr5	10723355	10723543	exon	GSVIVG01029013001	TIR-NBS-LRR resistance protein	75.38	2.97	29.35
Vvi255	chr5	10804457	10804687	intron	GSVIVG01029021001	TIR-NBS-LRR resistance protein	41.06	4.74	7.69
Vvi256	chr5	15017531	15017719	exon and intron	GSVIVG01021032001	basic helix-loop-helix (bHLH) protein	10.77	5.34	76.86
Vvi257	chr5	16037579	16037788	intergenic	NA	NA	77.74	11.27	11.18
Vvi258	chr5	16135564	16135794	intergenic	NA	NA	10.43	0	1.4
Vvi259	chr5	16230469	16230657	intergenic	NA	NA	6.06	0	0
Vvi260	chr5	16232157	16232345	intergenic	NA	NA	16.49	1.78	2.79
Vvi261	chr5	16241637	16241867	intergenic	NA	NA	10.43	0	2.1
Vvi262	chr5	16288987	16289217	exon	GSVIVG01020962001	TIR-NBS-LRR resistance protein	97.93	14.23	19.56
Vvi263	chr5	16683199	16683429	intergenic	NA	NA	50.48	6.52	8.38
Vvi264	chr5	17639315	17639503	exon and intron	GSVIVG01020895001	Ankyrin repeat-containing protein	29.28	3.56	1.4
Vvi265	chr5	18162433	18162663	intergenic	NA	NA	0	0	37.73
Vvi266	chr5	22483399	22483587	exon	GSVIVG01010777001	WD40 repeat-like superfamily protein	10.1	18.98	41.92
Vvi267	chr5	22551679	22551867	exon	GSVIVG01010783001	WD40 repeat-like superfamily protein	18.51	65.24	112.49
Vvi268	chr5	22564229	22564606	exon	GSVIVG01010785001	TAS9	917.69	230.1	524.04
Vvi269	chr5	22579854	22580063	exon	GSVIVG01010787001	WD40 repeat-like superfamily protein	18.51	65.24	112.49
Vvi270	chr5	23402232	23402483	exon and intron	GSVIVG01038090001	Plant regulator RWP-RK family protein	0.67	2.37	62.88
Vvi271	chr6	259138	259326	exon and intron	GSVIVG01025505001	RING/U-box superfamily protein	22.88	109.12	112.49
Vvi272	chr6	779612	779926	intergenic	NA	NA	1148.2	1040.2	2115.01
Vvi273	chr6	2804818	2805006	intron	GSVIVG01025241001	Ozone-responsive stress related protein	984.99	139.96	182.36
Vvi274	chr6	2805158	2805535	intron	GSVIVG01025241001	Ozone-responsive stress related protein	970.86	268.65	169.09
Vvi275	chr6	13594955	13595248	exon	GSVIVG01037447001	Cc-nbs-lrr resistance protein	111.72	14.83	40.53
Vvi276	chr6	13639300	13639509	exon	GSVIVG01037444001	Cc-nbs-lrr resistance protein	523.96	88.96	146.03
Vvi277	chr6	13639892	13640122	exon	GSVIVG01037444001	Cc-nbs-lrr resistance protein	116.77	16.01	29.35
Vvi278	chr6	16765655	16765843	intergenic	NA	NA	25.24	10.67	4.19
Vvi279	chr6	17414869	17415057	exon	GSVIVG01031535001	Disease resistance protein (NBS-LRR)	61.58	26.09	52.4
Vvi280	chr6	19332928	19333137	exon and intron	GSVIVG01031380001	Multidrug resistance protein ABC transporter family	79.08	166.05	137.65
Vvi281	chr7	1522102	1522479	exon and intron	GSVIVG01011107001	Methyltransferase (tRNA dimethylallyltransferase)	1366.6	2414.29	1286.34
Vvi282	chr7	2354826	2355329	exon	GSVIVG01010995001	F-box family protein	1376.36	773.93	3174.27
Vvi283	chr7	3905585	3905794	exon and intron	GSVIVG01028113001	Histidine kinase	0	0	44.02
Vvi284	chr7	4363949	4364179	intergenic	NA	TAS3	3388.07	2567.89	134.15
Vvi285	chr7	11129517	11129789	exon and intron	GSVIVG01028627001	Disease resistance protein (NBS-LRR)	37.69	11.86	48.91
Vvi286	chr7	12400447	12400635	exon and intron	GSVIVG01038298001	Cc-nbs-lrr resistance protein	15.48	10.08	34.94
Vvi287	chr7	17206761	17206991	exon	GSVIVG01022171001	Unknown protein	13.46	2.37	16.07
Vvi288	chr7	19018426	19018614	intergenic	NA	NA	0	0	48.91
Vvi289	chr7	20483563	20483877	exon and intron	GSVIVG01000245001	Suppressor of gene silencing 3 (SGS3)	166.91	103.78	47.51
Vvi290	chr7	20483930	20484118	exon and intron	GSVIVG01000245001	Suppressor of gene silencing 3 (SGS3)	81.44	34.99	46.81
Vvi291	chr7_random	390139	390643	exon	GSVIVG01003817001	Cc-nbs-lrr resistance protein	66.63	67.61	91.53
Vvi292	chr7_random	622628	622837	exon and intron	GSVIVG01004064001	Cc-nbs-lrr resistance protein	17.84	13.05	38.43
Vvi293	chr8	3435582	3435770	intergenic	NA	NA	14.47	0	0
Vvi294	chr8	21905796	21905984	intergenic	NA	NA	2.69	2.37	59.39
Vvi295	chr8	22251559	22251747	exon	GSVIVG01033242001	NA	27.59	7.12	10.48
Vvi296	chr8	22254131	22254678	intergenic	NA	NA	3292.84	947.69	1168.95
Vvi297	chr8	22256927	22257284	intergenic	NA	NA	1022.68	178.51	324.2
Vvi298	chr9	1162455	1162685	exon	GSVIVG01016765001	MYB domain protein	442.19	1058	266.91
Vvi299	chr9	2985707	2985937	intergenic	NA	NA	47.79	44.48	81.05
Vvi300	chr9	2986014	2986223	intergenic	NA	NA	103.31	59.3	108.3
Vvi301	chr9	3005110	3005361	exon	GSVIVG01016962001	Disease resistance protein	132.59	72.35	152.32
Vvi302	chr9	3017927	3018136	intergenic	NA	NA	161.53	91.92	150.22
Vvi303	chr9	3018950	3019138	exon	GSVIVG01016965001	Unknown protein	22.21	3.56	8.38
Vvi304	chr9	3485315	3485503	intron	GSVIVG01017020001	Cc-nbs-lrr resistance protein	6.06	0.59	2.1
Vvi305	chr9	3526851	3527081	exon	GSVIVG01017023001	Disease resistance protein	36.01	11.27	23.06
Vvi306	chr9	3573174	3573446	intergenic	NA	NA	40.05	13.64	27.25
Vvi307	chr9	3574030	3574239	intergenic	NA	NA	33.32	7.71	12.58
Vvi308	chr9	3689491	3689679	exon	GSVIVG01017038001	Unknown protein	12.45	10.08	45.42
Vvi309	chr9	3689932	3690120	intron	GSVIVG01017038001	Unknown protein	78.41	75.32	146.73
Vvi310	chr9	4487121	4487309	exon	GSVIVG01017134001	Disease resistance protein	12.79	1.19	6.29
Vvi311	chr9	4505990	4506178	exon	GSVIVG01017136001	Disease resistance protein	19.85	6.52	14.67
Vvi312	chr9	4552349	4552537	exon	GSVIVG01017143001	Disease resistance protein	20.53	7.71	16.07
Vvi313	chr9	4717983	4718255	intergenic	NA	NA	31.97	14.23	17.47
Vvi314	chr9	4722923	4723111	intergenic	NA	NA	31.97	7.12	38.43
Vvi315	chr9	4723329	4723538	intergenic	NA	NA	83.46	119.2	141.84
Vvi316	chr9	4891702	4891911	exon	GSVIVG01017166001	Disease resistance protein	8.41	10.08	16.07
Vvi317	chr9	5272038	5272226	exon	GSVIVG01017200001	Multidrug resistance protein ABC transporter family	0	204.6	4.89
Vvi318	chr9	5739113	5739533	exon	GSVIVG01017232001	Disease resistance protein	76.73	11.86	36.33
Vvi319	chr9	5979645	5979854	intergenic	NA	NA	24.9	4.74	16.77
Vvi320	chr9	6009995	6010183	intergenic	NA	NA	58.55	10.67	11.88
Vvi321	chr9	6190453	6191103	exon	GSVIVG01017269001	Disease resistance protein	708.04	207.57	150.22
Vvi322	chr9	9890546	9890797	intergenic	NA	NA	84.8	8.3	8.38
Vvi323	chr9	10399919	10400170	intergenic	NA	NA	1007.2	925.75	1128.43
Vvi324	chr9	11553982	11554170	exon	GSVIVG01038386001	Disease resistance protein	12.79	13.05	31.44
Vvi325	chr9	11554312	11554500	exon	GSVIVG01038386001	Disease resistance protein	24.23	19.57	67.78
Vvi326	chr9	11642945	11643344	exon	GSVIVG01038391001	Disease resistance protein	100.62	26.09	93.63
Vvi327	chr9	11807216	11807488	exon	GSVIVG01038402001	Disease resistance protein	237.58	177.91	445.78
Vvi328	chr9	11807588	11807776	exon	GSVIVG01038402001	Disease resistance protein	26.92	19.57	66.38
Vvi329	chr9	11828388	11828787	exon	GSVIVG01038404001	Disease resistance protein	92.88	20.76	81.05
Vvi330	chr9	12342534	12342722	intergenic	NA	NA	30.62	4.74	18.87
Vvi331	chr9	12490793	12491023	exon	GSVIVG01038446001	Disease resistance protein	93.55	20.76	70.57
Vvi332	chr9	13494462	13494650	exon	GSVIVG01034252001	Disease resistance protein	18.85	20.76	44.02
Vvi333	chr9	13494706	13494915	exon	GSVIVG01034252001	Disease resistance protein	147.4	89.55	156.51
Vvi334	chr9	16667998	16668228	exon	GSVIVG01015976001	Disease resistance protein	43.75	13.64	17.47
Vvi335	chr9	22643822	22644178	intergenic	NA	NA	4.37	13.05	742.04
Vvi336	chr9	22663078	22663266	intergenic	NA	NA	0.67	0	5.59
Vvi337	chr9	22663916	22664104	intergenic	NA	NA	0	1.19	11.88
Vvi338	chr9	22680131	22680445	intergenic	NA	NA	0.34	5.34	732.95
Vvi339	chr9_random	204698	205097	exon	NA	NA	116.77	21.94	71.97
Vvi340	chrUn	3171382	3171612	exon and intron	GSVIVG01000879001	Disease resistance protein (NBS-LRR)	176.34	85.4	69.17
Vvi341	chrUn	3649287	3649475	intergenic	NA	NA	8.41	6.52	1.4
Vvi342	chrUn	5115020	5115208	exon	GSVIVG01001489001	TIR-NBS-LRR resistance protein	6.73	0.59	1.4
Vvi343	chrUn	7279593	7279886	intergenic	NA	NA	1198.34	160.72	42.62
Vvi344	chrUn	16305464	16305652	exon	GSVIVG01004877001	TIR-NBS-LRR resistance protein	17.16	2.37	11.18
Vvi345	chrUn	24416649	24416921	exon	GSVIVG01006275001	MYB domain protein	149.75	84.21	4.19
Vvi346	chrUn	26050862	26051050	exon	GSVIVG01006445001	Unknown protein	0.67	1.19	80.35
Vvi347	chrUn	29309082	29309270	intergenic	NA	NA	125.86	106.75	56.6
Vvi348	chrUn	29555309	29555497	intergenic	NA	NA	14.47	5.34	9.08
Vvi349	chrUn	29788922	29789507	exon and intron	GSVIVG01007026001	Cc-nbs-lrr resistance protein	583.86	315.5	528.93
Vvi350	chrUn	29806890	29807304	exon and intron	GSVIVG01007029001	Cc-nbs-lrr resistance protein	191.82	29.65	102.01
Vvi351	chrUn	31019742	31020098	exon and intron	GSVIVG01007238001	Cc-nbs-lrr resistance protein	50.14	4.15	13.97
Vvi352	chrUn	32410750	32410982	intergenic	NA	NA	56.87	29.65	53.8
Vvi353	chrUn	41768377	41768649	intergenic	NA	NA	58.22	7.71	34.94
Vvi354	chrUn	41793147	41793525	intergenic	NA	NA	70.67	10.08	48.21
Vvi355	GSVIVT01000779001	203	412	exon	GSVIVT01000779001	NA	0	0.59	252.24
Vvi356	GSVIVT01000842001	37	246	exon	GSVIVT01000842001	Cc-nbs-lrr resistance protein	54.18	13.64	25.85
Vvi357	GSVIVT01004021001	644	832	exon	GSVIVT01004021001	Cc-nbs-lrr resistance protein	20.53	11.86	13.28
Vvi358	GSVIVT01006243001	1137	1325	exon	GSVIVT01006243001	Disease resistance protein (NBS-LRR)	48.46	7.71	32.84
Vvi359	GSVIVT01008819001	890	1162	exon	GSVIVT01008819001	zinc finger protein (C2H2-type)	586.55	333.29	129.26
Vvi360	GSVIVT01011311001	1387	1575	exon	GSVIVT01011311001	Unknown protein	221.43	59.9	97.12
Vvi361	GSVIVT01011520001	1546	1734	exon	GSVIVT01011520001	Leucine-rich repeat-containing protein	19.52	4.15	4.19
Vvi362	GSVIVT01012431001	120	308	exon	GSVIVT01012431001	NA	11.44	0.59	0
Vvi363	GSVIVT01012441001	298	486	exon	GSVIVT01012441001	zinc finger protein (HIT-type)	11.78	0.59	0
Vvi364	GSVIVT01014302001	261	449	exon	GSVIVT01014302001	"Squamosa promoter-binding protein, putative"	0	8.3	0
Vvi365	GSVIVT01014596001	1103	1291	exon	GSVIVT01014596001	Cc-nbs-lrr resistance protein	67.98	17.2	11.18
Vvi366	GSVIVT01015583001	687	896	exon	GSVIVT01015583001	Ubiquitin system component Cue protein	0.34	0	21.66
Vvi367	GSVIVT01017026001	209	397	exon	GSVIVT01017026001	Disease resistance protein	32.64	14.83	52.4
Vvi368	GSVIVT01017201001	3793	4002	exon	GSVIVT01017201001	Multidrug resistance protein ABC transporter family	0	109.71	1.4
Vvi369	GSVIVT01017426001	1104	1293	exon	GSVIVT01017426001	Disease resistance protein (NBS-LRR)	16.15	4.74	9.78
Vvi370	GSVIVT01017435001	1373	1562	exon	GSVIVT01017435001	Disease resistance protein (NBS-LRR)	16.15	4.74	9.78
Vvi371	GSVIVT01017463001	98	286	exon	GSVIVT01017463001	NA	12.79	2.97	4.89
Vvi372	GSVIVT01020430001	522	710	exon	GSVIVT01020430001	BTB/POZ domain-containing protein	9.09	11.86	9.78
Vvi373	GSVIVT01020895001	683	871	exon	GSVIVT01020895001	Ankyrin repeat-containing protein	1993.87	905.58	1226.94
Vvi374	GSVIVT01021935001	2199	2387	exon	GSVIVT01021935001	Cc-nbs-lrr resistance protein	13.46	3.56	4.19
Vvi375	GSVIVT01021948001	428	616	exon	GSVIVT01021948001	Cc-nbs-lrr resistance protein	117.78	69.39	89.44
Vvi376	GSVIVT01022103001	18	206	exon	GSVIVT01022103001	RING/U-box superfamily protein	0	0	18.17
Vvi377	GSVIVT01022666001	233	421	exon	GSVIVT01022666001	Transposase family protein	4.37	8.3	13.28
Vvi378	GSVIVT01022680001	380	589	exon	GSVIVT01022680001	Sentrin-specific protease 2	107.01	120.39	276.69
Vvi379	GSVIVT01022988001	126	314	exon	GSVIVT01022988001	TIR-NBS-LRR resistance protein	1.35	1.19	11.18
Vvi380	GSVIVT01023406001	98	286	exon	GSVIVT01023406001	Cc-nbs-lrr resistance protein	101.29	62.86	83.15
Vvi381	GSVIVT01023748001	244	516	exon	GSVIVT01023748001	Cc-nbs-lrr resistance protein	31.3	30.84	37.73
Vvi382	GSVIVT01024699001	2311	2499	exon	GSVIVT01024699001	"6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase"	13.46	0	2.1
Vvi383	GSVIVT01024980001	506	694	exon	GSVIVT01024980001	Actin 3	3.37	1.19	0
Vvi384	GSVIVT01025611001	199	493	exon	GSVIVT01025611001	Diaminopimelate epimerase family protein	413.58	275.17	653.3
Vvi385	GSVIVT01025910001	430	639	exon	GSVIVT01025910001	TIR-NBS-LRR resistance protein	2.36	0.59	14.67
Vvi386	GSVIVT01025958001	2167	2355	exon	GSVIVT01025958001	TIR-NBS-LRR resistance protein	140.66	18.38	37.03
Vvi387	GSVIVT01025968001	113	301	exon	GSVIVT01025968001	TIR-NBS-LRR resistance protein	3.03	0	18.17
Vvi388	GSVIVT01027276001	507	695	exon	GSVIVT01027276001	Disease resistance protein (NBS-LRR)	6.73	4.74	4.89
Vvi389	GSVIVT01029009001	2467	2697	exon	GSVIVT01029009001	TIR-NBS-LRR resistance protein	34.66	4.15	13.97
Vvi390	GSVIVT01029012001	451	639	exon	GSVIVT01029012001	TIR-NBS-LRR resistance protein	38.7	7.71	45.42
Vvi391	GSVIVT01029283001	390	578	exon	GSVIVT01029283001	Calcium-transporting ATPase 1	79.75	8.3	15.37
Vvi392	GSVIVT01031451001	2078	2287	exon	GSVIVT01031451001	RING/U-box superfamily protein (with Acyl-CoA N-acyltransferase activity)	0	0	45.42
Vvi393	GSVIVT01032000001	568	756	exon	GSVIVT01032000001	Disease resistance protein (NBS-LRR)	42.74	11.27	18.17
Vvi394	GSVIVT01032000001	1120	1308	exon	GSVIVT01032000001	Disease resistance protein (NBS-LRR)	531.36	100.22	164.9
Vvi395	GSVIVT01032210001	794	1024	exon	GSVIVT01032210001	Disease resistance protein (NBS-LRR)	11.78	10.67	41.22
Vvi396	GSVIVT01032602001	261	575	exon	GSVIVT01032602001	RING/U-box superfamily protein	0.34	0	7139.48
Vvi397	GSVIVT01036294001	1134	1364	exon	GSVIVT01036294001	TIR-NBS-LRR resistance protein	33.65	7.12	16.07
Vvi398	GSVIVT01036499001	1138	1347	exon	GSVIVT01036499001	CONSTANS-like protein	19.85	5.34	2.79
Vvi399	GSVIVT01037738001	421	630	exon	GSVIVT01037738001	"Cell division protein ftsZ, putative"	13.8	1.19	1.4
Vvi400	GSVIVT01038298001	1468	1656	exon	GSVIVT01038298001	Disease resistance protein (NBS-LRR)	48.8	7.71	30.74

PHAS ID	Reference ID	Start	End	Region	Gene ID	Annotation	Leaf	Female inflorescence	Male inflorescence
Zma001	1	51294532	51294720	exon	GRMZM5G833991	TAS3a1	988.11	368.88	963.4
Zma002	1	162602205	162602561	intergenic	NA	NA	0	14.79	99.97
Zma003	1	162920156	162920344	intergenic	NA	NA	0	5.69	26.95
Zma004	1	162929819	162930154	intergenic	NA	NA	0	22.76	104.87
Zma005	1	162972703	162972933	intergenic	NA	NA	0	5.23	32.1
Zma006	1	163005482	163005733	intergenic	NA	NA	0	7.05	38.47
Zma007	1	163007529	163007822	intergenic	NA	NA	0	0.23	12.5
Zma008	1	163132607	163132984	intergenic	NA	NA	0	35.73	160.73
Zma009	1	163154431	163154703	intergenic	NA	NA	0	18.89	43.61
Zma010	1	163157686	163158063	intergenic	NA	NA	0	72.82	226.39
Zma011	1	163199006	163199551	intergenic	NA	NA	0	12.97	104.62
Zma012	1	163306935	163307123	intergenic	NA	NA	0	19.8	59.05
Zma013	1	163334969	163335157	intergenic	NA	NA	0	12.06	35.77
Zma014	1	163341451	163341681	intergenic	NA	NA	0	6.83	30.14
Zma015	1	163344837	163345151	intergenic	NA	NA	0	24.58	113.69
Zma016	1	163346974	163347225	intergenic	NA	NA	0	24.35	92.13
Zma017	1	163385588	163385860	intergenic	NA	NA	0	1.37	6.13
Zma018	1	163389614	163390138	intergenic	NA	NA	0	68.95	210.47
Zma019	1	163525157	163525471	intergenic	NA	NA	0.32	29.36	113.93
Zma020	1	163565240	163565470	intergenic	NA	NA	0	27.99	39.94
Zma021	1	163722541	163722750	intergenic	NA	NA	0	10.01	30.87
Zma022	1	178054566	178054901	intergenic	NA	NA	0	1.37	81.1
Zma023	1	178285176	178285448	intergenic	NA	NA	0	4.78	7.6
Zma024	1	178286897	178287358	intergenic	NA	NA	0	124.71	986.43
Zma025	1	178410512	178410763	intergenic	NA	NA	0	52.8	92.13
Zma026	1	178419660	178420037	intergenic	NA	NA	0	59.39	123.98
Zma027	1	178959122	178959478	intergenic	NA	NA	0	21.62	48.02
Zma028	1	178963967	178964260	intergenic	NA	NA	0	12.06	32.1
Zma029	1	178969500	178969688	intergenic	NA	NA	0	4.1	9.8
Zma030	1	249329109	249329507	intergenic	NA	NA	0	20.03	169.31
Zma031	1	249330748	249331041	intergenic	NA	NA	0	15.25	123.73
Zma032	1	249357972	249358160	intergenic	NA	NA	0	0.46	10.29
Zma033	1	249359357	249359629	intergenic	NA	NA	0	4.78	49.25
Zma034	1	249371576	249371953	intergenic	NA	NA	0	10.01	161.47
Zma035	1	249373473	249373724	intergenic	NA	NA	0	11.38	75.46
Zma036	1	249377853	249378125	exon	GRMZM2G031788	Unknown protein	0	4.55	49.25
Zma037	1	249396901	249397278	intergenic	NA	NA	0	9.33	148.72
Zma038	1	249398564	249398752	intergenic	NA	NA	0	2.73	15.19
Zma039	1	262420663	262420893	intergenic	NA	NA	0	2.96	13.97
Zma040	1	262447521	262447730	intergenic	NA	NA	0	7.74	22.54
Zma041	1	283390560	283390832	intergenic	NA	NA	0	5.01	30.14
Zma042	1	283456841	283457113	intergenic	NA	NA	0	7.28	50.47
Zma043	1	283481597	283481953	intergenic	NA	NA	0	127.44	204.83
Zma044	1	283516751	283517149	intergenic	NA	NA	0.32	16.84	59.78
Zma045	1	283527944	283528300	intergenic	NA	NA	0	12.52	36.75
Zma046	1	283545968	283546324	intergenic	NA	NA	0	3.19	13.23
Zma047	1	283558539	283558769	intergenic	NA	NA	0	4.32	12.5
Zma048	1	284508432	284508683	intergenic	NA	NA	0	4.55	12.74
Zma049	1	284527188	284527460	intergenic	NA	NA	0	14.79	41.9
Zma050	1	284549033	284549284	intergenic	NA	NA	0	2.96	16.66
Zma051	1	284561623	284561874	intergenic	NA	NA	0	7.28	27.69
Zma052	1	284616298	284616738	intergenic	NA	NA	0	92.39	298.43
Zma053	1	284618389	284618724	intergenic	NA	NA	0	139.27	499.1
Zma054	1	284620346	284620639	intergenic	NA	NA	0	42.33	122.51
Zma055	1	284621973	284622245	intergenic	NA	NA	0	78.97	182.54
Zma056	1	284664343	284664573	intergenic	NA	NA	0	4.55	34.3
Zma057	1	284666013	284666285	intergenic	NA	NA	0	77.83	157.55
Zma058	1	284672211	284672651	intergenic	NA	NA	0	57.12	254.82
Zma059	1	284710097	284710411	intergenic	NA	NA	0	5.46	15.93
Zma060	1	284815648	284815878	intergenic	NA	NA	0	22.53	19.6
Zma061	1	284913301	284913594	intergenic	NA	NA	0	13.43	37.98
Zma062	1	285048880	285049110	intergenic	NA	NA	0	32.77	47.04
Zma063	1	285053255	285053548	intergenic	NA	NA	0	53.71	70.81
Zma064	1	285053907	285054095	intergenic	NA	NA	0	2.05	7.6
Zma065	1	285060055	285060285	exon and intron	GRMZM2G361220	AP-1 complex subunit sigma-2	0	3.41	31.85
Zma066	1	285065849	285066142	intergenic	NA	NA	0	5.69	19.85
Zma067	2	49308427	49308783	intergenic	NA	NA	0	42.1	135.74
Zma068	2	52314393	52314791	intergenic	NA	NA	0	4.78	14.46
Zma069	2	52432286	52432768	intergenic	NA	NA	0	7.96	97.03
Zma070	2	52476944	52477132	intergenic	NA	NA	0	15.25	92.62
Zma071	2	52551070	52551468	intergenic	NA	NA	0	1.59	14.46
Zma072	2	52558624	52559043	intergenic	NA	NA	0	149.97	416.77
Zma073	2	52601372	52601644	intergenic	NA	NA	0	18.21	65.91
Zma074	2	52604093	52604470	intergenic	NA	NA	0	30.49	86.25
Zma075	2	52659550	52659759	intergenic	NA	NA	0	6.6	31.85
Zma076	2	52682886	52683074	intergenic	NA	NA	0	11.83	63.95
Zma077	2	52731590	52731778	intergenic	NA	NA	0	3.41	33.57
Zma078	2	53292767	53293123	intergenic	NA	NA	0.32	104.45	310.68
Zma079	2	53366037	53366372	intergenic	NA	NA	0	17.75	90.9
Zma080	2	53402616	53402846	exon	GRMZM2G113425	Unknown protein	0.32	16.16	141.86
Zma081	2	53504981	53505316	intergenic	NA	NA	0	53.71	361.4
Zma082	2	53523063	53523272	intergenic	NA	NA	0	8.42	24.99
Zma083	2	89541456	89541728	intergenic	NA	NA	0	120.84	315.09
Zma084	2	136783698	136783886	intergenic	NA	NA	0	1.37	15.93
Zma085	2	136837479	136837709	intergenic	NA	NA	0	2.05	6.86
Zma086	2	136887308	136887559	intergenic	NA	NA	0	2.28	37.98
Zma087	2	137044927	137045115	intergenic	NA	NA	0	7.51	16.42
Zma088	2	137092232	137092420	intergenic	NA	NA	0	5.92	23.03
Zma089	2	137178223	137178474	intergenic	NA	NA	0.32	25.49	215.61
Zma090	2	137279621	137279956	exon	GRMZM2G452727	Unknown protein	0	73.5	201.89
Zma091	2	137337903	137338196	intergenic	NA	NA	0	19.12	82.33
Zma092	2	137396976	137397185	intergenic	NA	NA	0	1.59	26.95
Zma093	2	137397998	137398333	intergenic	NA	NA	0	15.93	119.57
Zma094	2	137489030	137489218	intergenic	NA	NA	0	27.76	85.51
Zma095	2	137777344	137777616	intergenic	NA	NA	0	4.55	25.48
Zma096	2	137907291	137907605	intergenic	NA	NA	0	9.1	23.03
Zma097	2	154161378	154161797	intergenic	NA	NA	0	43.92	145.05
Zma098	2	154291042	154291293	intergenic	NA	NA	0	17.52	94.33
Zma099	2	159074105	159074482	intergenic	NA	NA	0	23.21	54.15
Zma100	2	159076273	159076650	intergenic	NA	NA	0	26.63	98.5
Zma101	2	159321251	159321586	intergenic	NA	NA	0	23.44	114.91
Zma102	2	159353279	159353677	intergenic	NA	NA	0.32	20.48	103.89
Zma103	2	159362480	159362668	intergenic	NA	NA	0	0.46	3.68
Zma104	2	159749369	159749704	intergenic	NA	NA	0	10.01	21.32
Zma105	2	159758628	159758963	intergenic	NA	NA	0	135.63	392.03
Zma106	2	159760827	159761204	intergenic	NA	NA	0	10.7	101.44
Zma107	2	159791007	159791363	intergenic	NA	NA	0	11.38	65.91
Zma108	2	159800287	159800601	intergenic	NA	NA	0	44.6	159.02
Zma109	2	159844490	159844867	intergenic	NA	NA	0	10.7	101.44
Zma110	2	159987206	159987520	exon	GRMZM2G163769	50S ribosomal protein L22-like	0	1.37	20.34
Zma111	2	220387733	220388005	intergenic	NA	NA	0	2.5	18.87
Zma112	2	220402546	220402734	intergenic	NA	NA	0	3.64	11.76
Zma113	2	220429631	220429966	intergenic	NA	NA	0	20.94	49.25
Zma114	2	228171401	228171904	intergenic	NA	NA	0	27.54	101.19
Zma115	2	228176160	228176537	intergenic	NA	NA	0	17.07	242.57
Zma116	2	228383703	228383912	intergenic	NA	NA	0	6.6	14.95
Zma117	2	228385270	228385563	intergenic	NA	NA	0	2.96	18.87
Zma118	2	229447200	229447493	intergenic	NA	NA	0	7.51	12.99
Zma119	3	2801943	2802131	exon	GRMZM2G412073	Unknown protein	2.27	325.65	23.52
Zma120	3	18259172	18259360	intergenic	NA	NA	0	3.41	14.46
Zma121	3	18261045	18261485	intergenic	NA	NA	0	7.05	231.79
Zma122	3	18436352	18436666	intergenic	NA	NA	0	38.23	220.02
Zma123	3	85874953	85875225	intergenic	NA	NA	0	22.98	102.66
Zma124	3	85877638	85877994	intergenic	NA	NA	0	42.55	247.96
Zma125	3	131082122	131082310	intergenic	NA	NA	0	12.52	34.06
Zma126	3	131092727	131092915	intergenic	NA	NA	0	20.03	39.45
Zma127	3	131096797	131097153	intergenic	NA	NA	0	10.47	54.39
Zma128	3	131214176	131214490	exon	GRMZM2G016598	Unknown protein	0	1.14	13.97
Zma129	4	2941463	2941672	intergenic	NA	NA	0	5.23	7.84
Zma130	4	2976329	2976727	intergenic	NA	NA	0	62.13	216.59
Zma131	4	2980349	2980600	intergenic	NA	NA	0	14.34	57.82
Zma132	4	2995193	2995381	intergenic	NA	NA	0	2.05	12.99
Zma133	4	2995508	2995822	intergenic	NA	NA	0	250.55	773.03
Zma134	4	2997442	2997756	intergenic	NA	NA	0	35.05	50.72
Zma135	4	3278832	3279062	intergenic	NA	NA	0	9.79	37.49
Zma136	4	3285453	3285641	intergenic	NA	NA	0	7.96	41.9
Zma137	4	3288904	3289134	intergenic	NA	NA	0	29.58	78.16
Zma138	4	3334289	3334477	intergenic	NA	NA	0	2.96	12.01
Zma139	4	3354147	3354377	intergenic	NA	NA	0	29.58	78.16
Zma140	4	3390807	3390995	intergenic	NA	NA	0	14.11	44.84
Zma141	4	3394679	3394993	intergenic	NA	NA	0	10.01	28.91
Zma142	4	3395618	3395848	intergenic	NA	NA	0	20.48	39.2
Zma143	4	4681832	4682251	intergenic	NA	NA	0	120.84	225.66
Zma144	4	4684633	4684926	intergenic	NA	NA	0	5.92	9.31
Zma145	4	4685728	4685916	intergenic	NA	NA	0	21.16	50.23
Zma146	4	4688602	4688790	intergenic	NA	NA	0	43.69	197.97
Zma147	4	4717871	4718122	intergenic	NA	NA	0	4.32	54.88
Zma148	4	4788708	4788938	intergenic	NA	NA	0	34.36	105.85
Zma149	4	4791995	4792351	intergenic	NA	NA	0	2.96	27.44
Zma150	4	4799836	4800066	intergenic	NA	NA	0	3.19	11.76
Zma151	4	4802334	4802690	intergenic	NA	NA	0	43.69	73.26
Zma152	4	4807119	4807517	intergenic	NA	NA	0	7.28	28.18
Zma153	4	4808994	4809455	exon	GRMZM2G468222	Unknown protein	0	71.68	177.88
Zma154	4	4825361	4825549	intergenic	NA	NA	0	19.34	50.47
Zma155	4	4826780	4826989	intergenic	NA	NA	0	21.85	50.72
Zma156	4	4829218	4829511	intergenic	NA	NA	0.32	25.26	70.56
Zma157	4	4832783	4833034	exon	GRMZM5G831190	Unknown protein	0	3.41	8.58
Zma158	4	4836351	4836812	intergenic	NA	NA	0	30.95	105.11
Zma159	4	4877099	4877497	intergenic	NA	NA	0	55.07	118.59
Zma160	4	4985151	4985465	intergenic	NA	NA	0	6.14	13.72
Zma161	4	4993120	4993308	intergenic	NA	NA	0	39.37	243.55
Zma162	4	7010173	7010571	intergenic	NA	NA	0	104.91	517.72
Zma163	4	7013979	7014314	intergenic	NA	NA	0	58.71	445.93
Zma164	4	7050277	7050570	intergenic	NA	NA	0	19.34	45.08
Zma165	4	7066975	7067184	intergenic	NA	NA	0	2.05	8.33
Zma166	4	7071071	7071259	intergenic	NA	NA	0	2.5	16.17
Zma167	4	7072752	7073108	intergenic	NA	NA	0	7.28	32.34
Zma168	4	7077266	7077559	intergenic	NA	NA	0	6.14	15.93
Zma169	4	7154036	7154287	intergenic	NA	NA	0.32	5.46	56.6
Zma170	4	7155250	7155522	intergenic	NA	NA	0	2.73	14.7
Zma171	4	7166916	7167251	intergenic	NA	NA	0	18.89	58.31
Zma172	4	7176660	7176932	exon	GRMZM2G132248	Unknown protein	0	27.08	82.33
Zma173	4	15827896	15828210	intergenic	NA	NA	0	4.78	42.39
Zma174	4	73843628	73843942	intergenic	NA	NA	0	5.46	30.14
Zma175	4	136042463	136042651	exon	GRMZM5G806469	TAS3b1	33.38	16.38	39.69
Zma176	4	174849884	174850261	exon	GRMZM2G155490	TAS3	0	76.69	73.99
Zma177	5	5062432	5062725	intergenic	NA	NA	0	13.43	221.98
Zma178	5	5067001	5067315	exon	GRMZM2G504623	Unknown protein	0.32	8.65	112.46
Zma179	5	13183239	13183448	intergenic	NA	NA	0	8.88	48.51
Zma180	5	41260689	41260898	intergenic	NA	NA	0	4.55	38.71
Zma181	5	41264931	41265119	intergenic	NA	NA	0	1.59	7.11
Zma182	5	183501014	183501244	intergenic	NA	TAS3b1	465.05	787.83	1448.78
Zma183	5	183517110	183517424	exon	GRMZM2G512113	Unknown protein	377.87	382.99	731.37
Zma184	6	66532922	66533236	intergenic	NA	NA	0	8.42	56.6
Zma185	6	66537587	66537922	intergenic	NA	NA	0	5.01	12.74
Zma186	6	66620134	66620406	exon	GRMZM2G548519	Unknown protein	0	27.76	88.45
Zma187	6	85160993	85161328	exon	GRMZM2G112764	MYB domain protein	0	9.79	35.53
Zma188	6	90467022	90467273	intergenic	NA	NA	0	2.28	77.92
Zma189	6	157052737	157053303	intergenic	NA	NA	0	7.74	69.34
Zma190	6	157117456	157117665	intergenic	NA	NA	0	2.5	23.28
Zma191	6	157162390	157162620	intergenic	NA	NA	0	2.96	37.24
Zma192	6	157220660	157220848	intergenic	NA	NA	0	2.05	6.86
Zma193	6	157244515	157244808	intergenic	NA	NA	0	34.36	217.08
Zma194	6	157319743	157320036	intergenic	NA	NA	0	45.29	158.77
Zma195	6	157325072	157325386	intergenic	NA	NA	0	15.02	61.01
Zma196	7	10039686	10040210	intergenic	NA	NA	0	11.61	44.1
Zma197	7	10156622	10156810	intergenic	NA	NA	0	0.91	7.35
Zma198	7	10181132	10181530	intergenic	NA	NA	0	76.92	205.81
Zma199	7	17591310	17591519	intergenic	NA	NA	0	58.94	51.7
Zma200	7	17694113	17694427	intergenic	NA	NA	0	16.38	67.38
Zma201	7	17715870	17716100	intergenic	NA	NA	0	13.65	21.32
Zma202	7	17746057	17746329	intergenic	NA	NA	0	10.24	28.67
Zma203	7	17975512	17975721	intergenic	NA	NA	0	11.83	68.11
Zma204	7	20319370	20319642	intergenic	NA	NA	0	22.53	56.6
Zma205	7	20326663	20326914	exon	GRMZM2G066406	Unknown protein	0	7.51	28.67
Zma206	7	20330526	20330714	intergenic	NA	NA	0	0.68	4.17
Zma207	7	20448085	20448378	intergenic	NA	NA	0.32	13.2	56.84
Zma208	7	20453976	20454332	intergenic	NA	NA	0	10.01	38.96
Zma209	7	20472171	20472380	intergenic	NA	NA	0	8.88	22.3
Zma210	7	20478383	20478697	intergenic	NA	NA	0	9.56	29.4
Zma211	7	20539134	20539322	exon	GRMZM2G161072	Unknown protein	0	2.5	5.64
Zma212	7	20565024	20565296	intergenic	NA	NA	0	2.96	15.68
Zma213	7	20584285	20584494	intergenic	NA	NA	0	4.55	8.09
Zma214	7	20627675	20628010	intergenic	NA	NA	0	21.16	86
Zma215	7	20750713	20750922	intergenic	NA	NA	0	5.69	29.89
Zma216	7	27767401	27767652	intergenic	NA	NA	0	0.68	21.81
Zma217	7	171495847	171496056	intergenic	NA	NA	0	5.92	14.21
Zma218	7	171530154	171530363	intergenic	NA	NA	0	1.82	11.27
Zma219	7	171546243	171546620	exon	GRMZM2G560863	Unknown protein	0	17.29	31.61
Zma220	7	171547630	171547839	intergenic	NA	NA	0	22.53	26.22
Zma221	8	83780475	83780726	intergenic	NA	NA	0	1.14	14.95
Zma222	8	130211063	130211440	exon	GRMZM2G178686	TAS3a2	17.18	322.01	759.55
Zma223	8	159300339	159300653	intergenic	NA	NA	0	144.96	647.82
Zma224	8	159304089	159304277	intergenic	NA	NA	0	3.19	18.13
Zma225	9	11568326	11568598	intergenic	NA	NA	0	3.87	9.07
Zma226	9	11576104	11576565	intergenic	NA	NA	0	35.5	250.16
Zma227	9	11606460	11606648	intergenic	NA	NA	0	33.68	71.3
Zma228	9	22830705	22830977	intergenic	NA	NA	0.32	20.25	91.88
Zma229	9	22843432	22843662	intergenic	NA	NA	0	13.88	68.11
Zma230	9	22844861	22845049	intergenic	NA	NA	0	0.68	4.17
Zma231	9	22891250	22891501	intergenic	NA	NA	0	3.87	16.91
Zma232	9	22894767	22895018	intergenic	NA	NA	0	11.15	48.02
Zma233	9	23054072	23054260	intergenic	NA	NA	0	4.78	18.38
Zma234	9	23133987	23134238	intergenic	NA	NA	0	9.33	35.77
Zma235	9	44170264	44170452	exon	GRMZM2G588623	Unknown protein	0.32	38.91	13.23
Zma236	9	134289848	134290036	exon	GRMZM2G020468	TAS3a1	1234.4	224.83	387.13
Zma237	10	23969055	23969348	intergenic	NA	NA	0	1.37	5.88
Zma238	10	24025264	24025620	intergenic	NA	NA	0	17.07	43.86
Zma239	10	24027688	24028128	intergenic	NA	NA	0	48.24	189.4
Zma240	10	24035011	24035304	intergenic	NA	NA	0	36.41	76.2
Zma241	10	24040124	24040459	intergenic	NA	NA	0.32	19.34	131.08
Zma242	10	24318077	24318265	intergenic	NA	NA	0	7.51	25.24
Zma243	10	24324023	24324274	intergenic	NA	NA	0	7.96	22.05
Zma244	10	24378502	24378942	intergenic	NA	NA	0	12.29	60.52
Zma245	10	24400296	24400673	intergenic	NA	NA	0	3.87	20.09
Zma246	10	82176308	82176664	intergenic	NA	NA	0	8.88	81.84
Zma247	10	85312763	85312993	exon	GRMZM2G124744	Unknown protein	32.08	386.86	2649.11
Zma248	10	116229891	116230121	intergenic	NA	NA	0	3.19	26.71
Zma249	10	116239777	116239965	intergenic	NA	NA	0	5.46	18.13
Zma250	10	116243201	116243452	intergenic	NA	NA	0	31.18	99.23
Zma251	10	116244538	116245104	intergenic	NA	NA	0	99.45	128.88
Zma252	10	116294314	116294670	intergenic	NA	NA	0	114.92	155.34
Zma253	10	116333447	116333635	intergenic	NA	NA	0	4.32	19.11
Zma254	10	116336932	116337120	intergenic	NA	NA	0	14.11	41.9
Zma255	10	116430299	116430592	intergenic	NA	NA	0	22.07	67.38
Zma256	10	116450719	116450928	intergenic	NA	NA	0	2.05	22.3
Zma257	10	116473199	116473723	exon	GRMZM2G133233	Unknown protein	0	24.12	86
Zma258	10	116507411	116507620	intergenic	NA	NA	0	4.1	3.92
Zma259	GRMZM2G020468_T01	462	734	exon	GRMZM2G020468_T01	Unknown protein	1224.03	219.83	381.49
Zma260	GRMZM2G084821_T02	1032	1220	exon	GRMZM2G084821_T02	TAS3	977.74	363.88	957.77
Zma261	GRMZM2G101693_T03	886	1074	exon	GRMZM2G101693_T03	Hydrolase (Nudix 2)	0	0.68	4.17
Zma262	GRMZM2G504623_T01	457	729	exon	GRMZM2G504623_T01	Unknown protein	0.32	8.65	111.97
Zma263	GRMZM2G512113_T01	274	525	exon	GRMZM2G512113_T01	Unknown protein	377.55	382.77	731.37