| Unigene ID | Position 1a | Position 2b | Clone ID | Base at SNP site | Cultivar |
| UN20631 |
434 | 435 | EV569968 |
T | Raphanus raphanistrum subsp. landra |
| UN20631 |
434 | 435 | EX746627 |
A | Raphanus raphanistrum subsp. maritimus |
| UN20631 |
434 | 435 | EV539271 |
T | Raphanus raphanistrum subsp. raphanistrum (MS) |
| UN20631 |
434 | 435 | EV543102 |
T | Raphanus raphanistrum subsp. raphanistrum (MS) |
| UN20631 |
434 | 435 | EY935158 |
A | Raphanus sativus cv Early Scarlet Globe |
| UN20631 |
434 | 435 | EY939172 |
A | Raphanus sativus cv Early Scarlet Globe |