| Unigene ID | Position 1a | Position 2b | cultivar | number of bases at the SNP site |
| A | G | C | T | - |
| UN13940 | 109 | 113 | Arena | | | | 7 | |
| UN13940 | 109 | 113 | Raphanus raphanistrum subsp. landra | 2 | | | | |
| UN13940 | 109 | 113 | Raphanus raphanistrum subsp. maritimus | 2 | | | 2 | |
| UN13940 | 109 | 113 | Raphanus raphanistrum subsp. maritimus | 2 | | | 2 | |
| UN13940 | 109 | 113 | Raphanus raphanistrum subsp. raphanistrum | 2 | | | 2 | |
| UN13940 | 109 | 113 | Raphanus raphanistrum subsp. raphanistrum | 2 | | | 2 | |
| UN13940 | 109 | 113 | Rat-Tail Radish #3870 | | | | 2 | |