Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN00744

               1      -     51
UN00744        --> GGGAATCGGTCGGAGAGAGAAAAAA-GAGAGATGGGAGGGAAAGGTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- ..................................................
EV544537       <-- ..................................................
EX752437       <-- ..................................................
EV548957       --> GGGAATCGGTCGGAGAGAGAAAAAA-GAGAGATGGGAGGGAAAGGTAAGA
EX748529       --> GGGAATCGGTCGGAGAGAGAAAAA--GAGAGATGGGAGGGAAAGGTAAGA
EX770250       --> GGGAATCGGTCGGAGAGAGAAAAAA-GAGAGATGGGAGGGAAAGGTAAGA
EY947191       --> GGGAATCGGTCGGAGAGAGAAAAAA-GAGAGATGGGAGGGAAAGGTAAGA
FD940968       --> GGGAATCGGTCGGAGAGAGAAAAAAAGAGAGATGGGAGGGAAAGGTAAGA

               51     -    101
UN00744        --> AGAGGAGAGAGAAAAACTATTTGGCAGCTCACGGCGGACCGGCGAGACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- ..................................................
EV544537       <-- ..................................................
EX752437       <-- ..................................................
EV548957       --> AGAGGAGAGAGAAAAACTATTTGGCAGCTCACGGCGGACCGGCGAGACTC
EX748529       --> AGAGGAGAGAGAAAAACTATTTGGCAGCTCACGGCGGACCGGCGAGACTC
EX770250       --> AGAGGAGAGAGAAAAACTATTTGGCAGCTCACGGCGGACCGGCGAGACTC
EY947191       --> AGAGGAGAGAGAAAAACTATTTGGCAGCTCACGGCGGACCGGCGAGACTC
FD940968       --> AGAGGAGAGAGAAAAACTATTTGGCAGCTCACGGCGGACCGGCGAGACTC

               101    -    151
UN00744        --> CCGCCGCCGCCTGATCGTTCCAAGCAAGATGCACTTCCTTCCAAGCTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- .........................................CAAGCTCCG
EV544537       <-- ...............................................CCG
EX752437       <-- ..................................................
EV548957       --> CCGCCGCCGCCTGATCGTTCCAAGCAAGATGCACTTCCTTCCAAGCTCCG
EX748529       --> CCGCCGCCGCCTGATCGTTCCAAGCAAGATGCACTTCCTTCCAAGCTCCG
EX770250       --> CCGCCGCCGCCTGATCGTTCCAAGCAAGATGCACTTCCTTCCAAGCTCCG
EY947191       --> CCGCCGCCGCCTGATCGTTCCAAGCAAGATGCACTTCCTTCCAAGCTCCG
FD940968       --> CCGCCGCCGCCTGATCGTTCCAAGCAAGATGCACTTCCTTCCAAGCTCCG

               151    -    201
UN00744        --> TGTTCTCATGAACTACACCTCTCCGCCTCCTCCTCAAGATTCTACTAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- TGT-CTCATGAACTACACCTCTCCGCCTCCTCCTCAAGATTCTACTAAAC
EV544537       <-- TGTTCTCATGAACTACACCTCTCCGCCTCCTCCTCAAGATTCTACTAAAC
EX752437       <-- ..TTCTCATGAACTACACCTCTCCGCCTCCTCCTCAAGATTCTACTAAAC
EV548957       --> TGTTCTCATGAACTACACCTCTCCGCCTCCTCCTCAAGATTCTACTAAAC
EX748529       --> TTTTCTCATGAACTACACCTCTCCGCCTCCTCCTCAAGATTCTACTAAAC
EX770250       --> TGTTCTCATGAACTACACCTCTCCGCCTCCTCCTCAAGATTCTACTAAAC
EY947191       --> TGTTCTCATGAACTACACCTCTCCGCCTCCTCCTCAAGATTCTACTAAAC
FD940968       --> TGTTCTCATGAACTACACCTCTCCGCCTCCTCCTCAAGATTCTACTAAAC

               201    -    251
UN00744        --> AACAAGTTGTTGTAGAGAAGAAAGAAAAAAATTCTAAAGCTGGAGTAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- AACAAGTTGTTGTAGAGAGGAAAGAAAAAAATTCTAAAGCTGGAGTAGTA
EV544537       <-- AACAAGTTGTTGTAGAGAAGAAAGAAAAAAATTCTAAAGCTGGAGTAGTA
EX752437       <-- AACAAGTTGTTGTAGAGAAGAAAGAAAAAAATTCTAAAGCTGGAGTAGTA
EV548957       --> AACAAGTTGTTGTAGAGAAGAAAGAAAAAAATTCTAAAGCTGGAGTAGTA
EX748529       --> AACAAGTTGTTGTAGAGAAGAAAGAAAAAAATTCTAAAGCTGGAGTAGTA
EX770250       --> AACAAGTTGTTGTAGAGAGGAAAGAAAAAAATTCTAAAGCTGGAGTAGTA
EY947191       --> AACAAGTTGTTGTAGAGAAGAAAGAAAAAAA...................
FD940968       --> AACAAGTTGTTGTAGAGAAGAAAGAAAAAA-TTCTAAAGCTGGAGTAGTA

               251    -    301
UN00744        --> GTTGGTGCTGCCAAGAATGTCAAGTCTGGGAGTGAAGCAAAGTCGGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- GTTGGTGCTGCCAAGAATGTCAAGTCTGGGAGTGAAGCAAAGTCGGAAGC
EV544537       <-- GTTGGTGCTGCCAAGAATGTCAAGTCTGGGAGTGAAGCAAAGTCGGAAGC
EX752437       <-- GTTGGTGCTGCCAAGAATGTCAAGCCTGGGAGTGAAGCAAAGTCGGAAGC
EV548957       --> GTTGGTGCTGCCAAGAATGTCAAGTCTGGGAGTGAAGCAAAGTCGGAAGC
EX748529       --> GTTGGTGCTGCCAAGAATGTCAAGCCTGGGAGTGAAGCAAAGTCGGAAGC
EX770250       --> GTTGGTGCTGCCAAGAATGTCAAGTCTGGGAGTGAAGCAAAGTCGGAAGC
EY947191       --> ..................................................
FD940968       --> GTTGGTGCTGCCAAGAATGTCAAGTCTGGGGGTGAAGCAAAGTCGGAAAC

               301    -    351
UN00744        --> AAAGGCGGTTGGAGAAGGAAAATCTGAGGGATACACAACCTCTTCTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- AAAGGCGGTTGGAGAAGGAAAATCTGAGGGATACACAACCTCTTCTGATC
EV544537       <-- AAAGGCGGTTGGAGAAGGAAAATCTGAGGGATACACAACCTCTTCTGATC
EX752437       <-- AAAGGTGGTTGGAGAAGGAAAATCTGAGGGATACACAACCTCTTCTGATC
EV548957       --> AAAGGCGGTTGGAGAAGGAAAATCTGAGGGATACACAACCTCTTCTGATC
EX748529       --> AAAGGTGGTTGGAGAAGGAAAATCTGAGGGATACACAACCTCTTCTGATC
EX770250       --> AAAGGCGGTTGGAGAAGGAAAATCTGAGGGATACACAACCTCTTCTGATC
EY947191       --> ..................................................
FD940968       --> AAAGGCGGTTGGAGAAGGAAAATCTGAGGGATACACAACCTCTTCTGATC

               351    -    401
UN00744        --> ATGAGAATGATGGAGACGATATAAAGTTGAACAACAAGGGGGGAGATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- ATGAGAATGATGGAGACGATATAAAGTTGAACAACAAGGGGGGAGATGAA
EV544537       <-- ATGAGAATGATGGAGACGATATAAAGTTGAACAACAAGGGGGGAGATGAA
EX752437       <-- ATGAGAATGATGGAGACGATATAAAGTTGAACAACAAGGGGGGAGATGAA
EV548957       --> ATGAGAATGATGGAGACGATATAAAGTTGAACAACAAGGGGGGAGATGAA
EX748529       --> ATGAGAATGATGGAGACGATATAAAGTTGAACAACAAGGGGGGAGATGAA
EX770250       --> ATGAGAATGATGGAGACGATATAAAGTTGAACAACAAGGGGGGAGATGAA
EY947191       --> ..................................................
FD940968       --> ATGAGAATGATGGAGACGATATAAAGTTGAACAACAAGGGGGGAGATGAA

               401    -    451
UN00744        --> AAGAAGAAGAAAAAGAGAAAGAGGAGTGAGATCAAGGACCTTCGTTTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- AAGAAGAAGAAAAAGAGAAAGAGGAGTGAGATCAAGGACCTTCGTTTCGA
EV544537       <-- GAGAAGAAGAAAAAGAGAAAGAGGAGTGAGATCAAGGACCTTCGTTTCGA
EX752437       <-- AAGAAGAAGAAAAAGAGAAAGAGGAGTGAGATCAATGACCTTCGTTTCGA
EV548957       --> GAGAAGAAGAAAAAGAGAAAGAGGAGTGAGATCAAGGACCTTCGTTTCGA
EX748529       --> AAGAAGAAGAAAAAGAGAAAGAGGAGTGAGATCAATGACCTTCGTTTCGA
EX770250       --> AAGAAGAAGAAAAAGAGAAAGAGGAGTGAGATCAAGGACCTTCGTTTCGA
EY947191       --> ..................................................
FD940968       --> AAGAAGAAGAAAAAGAGAAAGAGGAGTGAGATCAAGGACCTTCGTTTCGA

               451    -    501
UN00744        --> ACAGGAACTTGCAGAGTTGGATGGTCGGTCCAAAAGGAAAGAACGCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- ACAGGAACTTGCAGAGTTGGATGGTCGGTCCAAAAGGAAAGAACGCAAGA
EV544537       <-- ACAGGAACTTGCAGAGTTGGATGGTCGGTCCAAAAGGAAAGAACGCAAGA
EX752437       <-- ACAGGAACTTGCAGAGTTGGATGGTCGGTCCAAAAGGAAAGAACGCAAGA
EV548957       --> ACAGGAACTTGCAGAGTTGGATGGTCGGTCCAAAAGGAAAGAACGCAAGA
EX748529       --> ACAGGAACTTGCAGAGTTGGATGGTCGGTCCAAAAGGAAAGAACGCAAGA
EX770250       --> ACAGGAACTTGCAGAGTTGGATGGTCGGTCCAAAAGGAAAGAACGCAAGA
EY947191       --> ..................................................
FD940968       --> ACAGGAACTTGCAGAGTTGGATGGTCGGTCCAAAAGGAAAGAACGCAAGA

               501    -    551
UN00744        --> AGAAGTATTGGGAGGCAAAGAAGCAAAAGAAGAATAAAGGAAAAACAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- AGAAGTATTGGGAGGCAAAGAAGCAAAAGAAGAATAAAGGAAAAACAGAA
EV544537       <-- AGAAGTATTGGGAGGCAAAGAAGCAAAAGAAGAATAAAGGAAAAACAGAA
EX752437       <-- AGAAGTATTGGGAGGCAAAGAAGCAAAAGAAGAATAAAGGAAAAACAGAA
EV548957       --> AGAAGTATTGGGAGGCAAAGAAGCAAAAGAAGAATAAAGGAAAAACAGAA
EX748529       --> AGAAGTATTGGGAGGCAAAGAAGCAAAAGAAGAATAAAGGAAAAACAGAA
EX770250       --> AGAAGTATTGGGAGGCAAAGAAGCAAAAGAAGAATAAAGGAAAAACAGAA
EY947191       --> ..................................................
FD940968       --> AGAAGTATTGGGAGGCAAAGAAGCAAAAGAAGAATAAAGGAAAAACAGAA

               551    -    601
UN00744        --> GATACACTCCGAGAAAACTTCCCCAAGCATGAGCAGATCAGATTTGGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- GATACACTCCGAGAAAACTTCCCCAAGCATGAGCAGATCAGATTTGGTGA
EV544537       <-- GATACACTCCGAGAAAACTTCCCCAAGCATGAGCAGATCAGATTTGGTGA
EX752437       <-- GATACACTCCGAGAAAACTTCCCCAAGCATGAGCAGATCAGATTTGGTGA
EV548957       --> GATACACTCCGAGAAAACTTCCCCAAGCATGAGCAGATCAGATTTGGTGA
EX748529       --> GATACACTCCGAGAAAACTTCCCCAAGCATGAGCAGATCAGATTTGGTGA
EX770250       --> GATACACTCCGAGAAAACTTCCCCAAGCATGAGCAGATCAGATTTGGTGA
EY947191       --> ..................................................
FD940968       --> GATACACTCAGAGAAAACTTCCCCAAGCATGAGCAGATCAGATTTGGTGA

               601    -    651
UN00744        --> TGTGGTTCAAGCTCCACCGAAGCTGGCCGTTGTTCCAAAGGCACGAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- TGTGGTTCAAGCTCCACCGAAGCTGGCCGTTGTTCCAAAGGCACGAAAGA  Raphanus raphanistrum subsp. landra
EV544537       <-- TGTCGTTCAAGCTCCACCGAAGCTGGCCGTTGTTCCAAAGGCACGAAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752437       <-- TGTGGTTCAAGCTCCACCGAAGCTGGCCGTTGTTCCAAAGGCACGAAAGA  Raphanus raphanistrum subsp. maritimus
EV548957       --> TGTCGTTCAAGCTCCACCGAAGCTGGCCGTTGTTCCAAAGGCACGAAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748529       --> TGTGGTTCAAGCTCCACCGAAGCTGGCCGTTGTTCCAAAG-CACGAAAGA  Raphanus raphanistrum subsp. maritimus
EX770250       --> TGTGGTTCAAGCTCCACCGAAGCTGGCCGTTGTTCCAAAG-CACGAAAGA  Raphanus raphanistrum subsp. landra
EY947191       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD940968       --> TGTCGTTCAAGCTCCACCGAAGCTTGCTGTTGT.................  Raphanus sativus var. oleiformis

               651    -    701
UN00744        --> CTCCTATGAGTGCTTCCAAGGAGAGACTGCGGTTAGAGGCCATTGAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- CTCCTATGAGTGCTTCCAAGGAGAGACTGCGGTTAGAGGCCATTGAAGCT
EV544537       <-- CTCCTATGAGTGCTTCCAAGGAGAGACTGCGGTTAGAGGCCATTGAAGCT
EX752437       <-- CTCCTATGAGTGCTTCCAAGGAGAGACTGCGGTTAGAGGCCATTGAAGCT
EV548957       --> CTCCTATGAGTGCTTCCAAGGAGAGACTGCGGTTAGAGGCCATTGAAGCT
EX748529       --> CTCCTATGAGTGCTTCCAAG-AGAGACTGCGGTTAGAGGCattg......
EX770250       --> CTCCTATGAGTGCTTCCA--GAGAGACTGCG-TTAGAGGC-ATTGA-GCT
EY947191       --> ..................................................
FD940968       --> ..................................................

               701    -    751
UN00744        --> TACAGATCTCGCAATGGATGGACCTCGAGACCAGGCGTTCAGATTCCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- TACAGATCTCGCAATGGATGGACCTCAAGACCAGGCGTTCAGATTCCTAC
EV544537       <-- TACAGATCTCGCAATGGATGGACCTCGAGACCAGGCGTTCAGATTCCTAC
EX752437       <-- TACAGATCTCGCAATGGATGGACCTCAAGACCAGGCGTTCAGATTCCTAC
EV548957       --> TACAGATCTCGCAATGGATGGACCTCGAGACCAGGCGTTCAGATTCCTAC
EX748529       --> ..................................................
EX770250       --> TACAGATCTCGC......................................
EY947191       --> ..................................................
FD940968       --> ..................................................

               751    -    801
UN00744        --> CGTCACCATGCAATGAGATTTTGGTTGGGTCATATGAACTCAGTTTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- CGTCACCATGCAATGAGATTTTGGTTGGGTCATATGAACTCAGTTTTGTG
EV544537       <-- CGTCACCATGCAATGAGATTTTGGTTGGGTCATATGAACTCAGTTTTGTG
EX752437       <-- CGTCACCATGCAATGAGATTTTGGTTGGGTCATATGAACTCAGTTTTGTG
EV548957       --> CGTCACCATGCAATGAGATTTTGGTTGGGTCATATGAA............
EX748529       --> ..................................................
EX770250       --> ..................................................
EY947191       --> ..................................................
FD940968       --> ..................................................

               801    -    851
UN00744        --> TTACTAGCTAGCTGGCTGTTAAACTAGTTTGGATTCTAACGTTGTGATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- TTACTAGCTAGCTGGCTGTTAAACTAGTTTGGATTCTAACGTTGTGATAG
EV544537       <-- TTACTAGCTAGCTGGCTGTTAAACTAGTTTGGATTCTAACGTTGTGATAG
EX752437       <-- TTACTAGCTAGCTGGCTGTTAAACTAGCTTGGATTCTAACGTTGTGATAG
EV548957       --> ..................................................
EX748529       --> ..................................................
EX770250       --> ..................................................
EY947191       --> ..................................................
FD940968       --> ..................................................

               851    -    901
UN00744        --> TTTGAATTACCCAAACATCTCTTCCAATATGTAAAAGTGGATTATTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- TTTGAATTACCCAAACATCTCTTCCAATATGTAAAAGTGGATTATTTAAA
EV544537       <-- TTTGAATTACCCAAACATCTCTTCCAATATGTAAAAGTGGATTATTTAAA
EX752437       <-- TTTGAATTACCCAAACATCTCTTCCAATATGTAAAAGTGGATTATTTAAA
EV548957       --> ..................................................
EX748529       --> ..................................................
EX770250       --> ..................................................
EY947191       --> ..................................................
FD940968       --> ..................................................

               901    -    951
UN00744        --> TTTCAGTACCAAGGAAATCTTTTTGGTGTTTGCTTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774482       <-- TTTCAGTACCAAGGAAATCTTTTTGGTG..........
EV544537       <-- TTTCAGTACCAAGGAAATCTTTTTGGTGTTTGCTTATC
EX752437       <-- TTTCAGTACCAAGGAAATCTTTTTGGc...........
EV548957       --> ......................................
EX748529       --> ......................................
EX770250       --> ......................................
EY947191       --> ......................................
FD940968       --> ......................................