Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN00898

               1      -     51
UN00898        --> GGGACACAAAACGCCAACTAATTTACAGTATTCTCTTCTGACTTGGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- ..................................................
EW728168       <-- ..................................................
FD530034       <-- ..................................................
EX773096       --> GGGACACAAAACGCCAACTAATTTACAGTATTCTCTTCTGACTTGGGAGG
EW723153       --> ..................................................
FY429345       --> ..................................................
FD965874       --> ..................................................

               51     -    101
UN00898        --> TGAGAAGAAGGAAGAATCTGTGCTTCGACTCCAATGGCGCTCTCGAATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- ..................................................
EW728168       <-- ..................................................
FD530034       <-- ..................................................
EX773096       --> TGAGAAGAAGGAAGAATCTGTGCTTCGACTCCAATGGCGCTCTCGAATAC
EW723153       --> ..................................................
FY429345       --> ..................................................
FD965874       --> ..................................................

               101    -    151
UN00898        --> TATCTTCTTCTCTCTTTCTCATTTAGCTCCCTTTACTTCTTCTTCTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- ..................................................
EW728168       <-- ..................................................
FD530034       <-- ..................................................
EX773096       --> TATCTTCTTCTCTCTTTCTCATTTAGCTCCCTTTACTTCTTCTTCTTCTT
EW723153       --> ..................................................
FY429345       --> ..................................................
FD965874       --> ..................................................

               151    -    201
UN00898        --> CTTCTTCCGCCACCAGCTGCCAGACTCGCTCTCCCGCTCTAATTTCACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- ..................................................
EW728168       <-- ..................................................
FD530034       <-- ..................................................
EX773096       --> CTTCTTCCGCCACCAGCTGCCAGACTCGCTCTCCCGCTCTAATTTCACCT
EW723153       --> ..................................................
FY429345       --> ..................................................
FD965874       --> ..................................................

               201    -    251
UN00898        --> CCAGATCTACTATCATCGCCTGCTTTCTTCGCTGATCCCCGGAAGTTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- ..................................................
EW728168       <-- ..................................................
FD530034       <-- ..................................................
EX773096       --> CCAGATCTACTATCATCGCCTGCTTTCTTCGCTGATCCCCGGAAGTTAAT
EW723153       --> ..................................................
FY429345       --> ..................................................
FD965874       --> ..................................................

               251    -    301
UN00898        --> TCATCTATC-ACGAGGAGTATAAG-AAGAACCGTGTATATGCTTTGATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- .CATCTATC-ACGAGGAGTATAAG-AAGAACCGTGTATATGCTTTGATTA
EW728168       <-- ..................................................
FD530034       <-- ..................................................
EX773096       --> TCATCTATCCACGAGGAGTATAAGGAAGAACCGTGTATATGCTTTGATTA
EW723153       --> ..................................................
FY429345       --> ..................................................
FD965874       --> ..................................................

               301    -    351
UN00898        --> -CAGCACTAATGCTACTCCTCC-TCTTATCCGAAA-CGGAAGATGATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- -CAGCACTAATGCTACTCCTCC-TCTTATCCGAAA-CGGAAGATGATGAT
EW728168       <-- ..................................................
FD530034       <-- ..................................................
EX773096       --> ACAGCACTAATGCTACTCCTCCCTCTTATCCGAAAACGGAAGATGATGAT
EW723153       --> ..................................................
FY429345       --> ..................................................
FD965874       --> ..................................................

               351    -    401
UN00898        --> GATGATGACTTCTTTCCAATGCCAATGGTTTTGATAGACCAGGATGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- GATGATGACTTCTTTCCAATGCCAATGGTTTTGATAGACCAGGATGCTGA
EW728168       <-- ..................................................
FD530034       <-- ..................................................
EX773096       --> GATGATGACTTCTTTCCAATGCCAATGGTTTTGATAGACCAGGATGCTGA
EW723153       --> ..................................................
FY429345       --> ..................................................
FD965874       --> ..................................................

               401    -    451
UN00898        --> CCCTGAAGCCACCATTGTTCAACTCAATTTTGGAGATCGTCTTGGGGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- CCCTGAAGCCACCATTGTTCAACTCAATTTTGGAGATCGTCTTGGGGCTC
EW728168       <-- ............................................GGGCTC
FD530034       <-- ..................................................
EX773096       --> CCCTGAAGCCACCATTGTTCAACTCAATTTTGGAGATCGTCTTGGGGCTC
EW723153       --> ..............gTGTTCAACTCAGTTTTGGAGATCGTCTTGGGGCTC
FY429345       --> ..................................................
FD965874       --> ..................................................

               451    -    501
UN00898        --> TCATTGACACTATGAGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- TCATTGACACTATGAGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAA
EW728168       <-- TCATTGACACTATGAGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAA
FD530034       <-- ..................................................
EX773096       --> TCATTGACACTATGAGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAA
EW723153       --> TCATTGACACTATGAGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAA
FY429345       --> ..................................................
FD965874       --> ..................................................

               501    -    551
UN00898        --> GGAACCGTCTCAACTGAAGGATCTGTTAAGCAGACCAAATTTTCTATAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- GGAACCGTCTCAACTGAAGGATCTGTTAAGCAGACCAAATTTTCTATAAC
EW728168       <-- GGAACCGTCTCAACTGAAGGATCTGTTAAGCAGACCAAATTTTTTATAAC
FD530034       <-- ..................................................
EX773096       --> GGAACCGTCTCAACTGAAGGATCTGTTAAGCAGACCAAATTTTCTATAAC
EW723153       --> GGAACCGTCTCAACTGAAGGATCTGTTAAGCAGACCAAATTTTCTATAAC
FY429345       --> ..gACCGTCTCA-CTGAAGGATCTGTTAAGCAGACCAAATTTTCTATAAC
FD965874       --> ..................................................

               551    -    601
UN00898        --> AAAACTAGACACTGGTCGGAAAGTGGAAGATCCTGACTCCTTGGAGCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- AAAACTAGACACTGGTCGGAAAGTGGAAGATCCTGACTCCTTGGAGCAAA
EW728168       <-- AAAACTAGACACTGGTCGGAAAGTGGAAGATCCTGACTCCTTGGAGCAAA
FD530034       <-- ..................................................
EX773096       --> AAAACTAGACACTGGTCGGAAAGTGGAAGATCCTGACTCCTTGGAGCAAA
EW723153       --> AAAACTAGACACTGGTCGGAAAGTGGAAGATCCTGACTCCTTGGAGCAAA
FY429345       --> AAAACTAGACACTGGTCGGAAAGTGGAAGATCCTGACTCCTTGGAGCAAA
FD965874       --> ..................................................

               601    -    651
UN00898        --> TCCGATTAACAATCATCAATAATCTTTTGAAATACCATCCGGAATGCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- TCCGATTAACAATCATCAACAATCTTTTGAAGTACCATCCGGAATGCAGT  Raphanus raphanistrum subsp. landra
EW728168       <-- TCCGATTAACAATCATCAATAATCTTTTGAAATACCACCCGGAATGCAGT  Raphanus sativus cv Early Scarlet Globe
FD530034       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX773096       --> TCCGATTAACAATCATCAACAATCTTTTGAAGTACCATCCGGAATGCAGT  Raphanus raphanistrum subsp. landra
EW723153       --> TCCGATTAACAATCATCAATAATCTTTTGAAATACCACCCGGAATGCAGT  Raphanus sativus cv Early Scarlet Globe
FY429345       --> TCCGATTAACAATCATCAATAATCTTTTGAAATACCATCCGGAATGCAGT  Raphanus sativus cv GSK3-1
FD965874       --> gCCGATTAACAATCATCAACAATCTTTTGAAATACCATCCGGAATTCAGT  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN00898        --> GATCAACTTGCAATGGGTGAGACATTTGGAATAAAGGCCCCCAAAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- GATCAACTTGCAATGGGTGAGACATTTGGAATAAAGGCCCCAAAAAAGAA
EW728168       <-- GATCAACTTGCAATGGGTGAGACATTTGGAATAAAGGCCCCCAAAAAGAA
FD530034       <-- ..................................................
EX773096       --> GATCAACTTGCAATGGGTGAGACATTTGGAATAAAGCCCCa.........
EW723153       --> GATCAACTTGCAATGGGTGAGACATTTGGAATAAAGGCCCCCAAAAAGAA
FY429345       --> GATCAACTTGCAATGGGTGAGACATTTGGAATAAAGGCCCCCAAAAAGAA
FD965874       --> GATCAACTTGCAATGGGTGAGACATTTGGAATAAAGGCCCCCAAAAAGAA

               701    -    751
UN00898        --> GATTGATGTTGATATCGCTACTCACATACATGTGAAAGAAGATGGACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- GATTGATGTTGATATCGCGACTCACATACATGTGAAAGAAGATGGACCAA
EW728168       <-- GATTGATGTTGATATCGCTACTCACATACATGTGAAAGAAGATGGACCAA
FD530034       <-- ..................................................
EX773096       --> ..................................................
EW723153       --> GATTGATGTTGATATCGCTACTCACATACATGTGAAAGAAGATGGACCAA
FY429345       --> GATTGATGTTGATATCGCTACTCACATACATGTGAAAGAAGATGGACCAA
FD965874       --> GATTGATGTTGATATCGCGACTCACATACATGTGAAAGAAGATGGACCAA

               751    -    801
UN00898        --> AGAGGAGCTTGCTTTGCATAGAGACAGCAGACAGGCCAGGTCTTGTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- AGAGGAGCTTGCTTTGCATAGAGACAGCAGACAGGCCAGGTCTTGTTGTG
EW728168       <-- AGAGGAGCTTGCTTTGCATATAGACAGCAGACAGGCCAGGTCTTGTTGTG
FD530034       <-- ..................................................
EX773096       --> ..................................................
EW723153       --> AGAGGAGCTTGCTTTGCATATAGACAGCAGACAGGCCAGGTCTTGTTGTG
FY429345       --> AGAGGAGCTTGCTTTGCATAGAGACAGCAGACAGGCCAGGTCTTGTTGTG
FD965874       --> AGAGGAGCTTGCTTTGCATAGAGACAGCAGACAGGCCAGGTCTTGTTGTG

               801    -    851
UN00898        --> GAGATGATAAAAGTGATGGCAGATATCAACATAGACGTTGAATCCGCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- GAGATGATAAAAGTGATGGCAGATATCAACATAGACGTTGAATCCGCGGA
EW728168       <-- GAGATGATAAAAGTGATGGCAGATATCAACATAGACGTTGAATCCGCGGA
FD530034       <-- ........................ATCAACATAGACGTTGAATCCGGGGA
EX773096       --> ..................................................
EW723153       --> GAGATGATAAAAGTGATGGCAGATATCAACATAGACGTTGAATCCGCGGA
FY429345       --> GAGATGATAAAAGTGATGGCAGATATCAACATAGACGTTGAATCCGCGGA
FD965874       --> GAGATGATAAAAGTGATGGCAGATATCAACATTGACGTTGAATCCGCGGA

               851    -    901
UN00898        --> GATAGACACAGAAGGACTGGTTGCGAAAGACAAGTTTCATGTAAGCTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- GATAGACACAGAAGGACTGGTTGCGAAAGACAAGTTTCATGTAAGCTACC
EW728168       <-- GATAGACACAGAAGGACTGGTTGCGAAAGACAAGTTTCATGTAAGCTACC
FD530034       <-- GATAGACACAGAAGGACTGGTTGCGAAAGACAAGTTTCATGTAAGCTACC
EX773096       --> ..................................................
EW723153       --> GATAGACACAGAAGGACTGGTTGCGAAAGACAAGTTTCATGTAAGCTACC
FY429345       --> GATAGACACAGAAGGACTGGTTGCGAAAGACAAGTTTCATGTAAGCTACC
FD965874       --> GATAGACACAGAAGGACTGGTTGCGAAAGACAAGTTTCATGTAAGCTACC

               901    -    951
UN00898        --> AAGGGCAAGCGCTAAACAGTTCATTGTCACAGGTGTTGGTGAACTGTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- AAGGGCAAGCGCTAAACAGTTCATTGTCACAGGTGTTGGTGAACTGTTTA
EW728168       <-- AAGGGCAAGCGCTAAACAGTTCATTGTCACAGGTGTTGGTGAACTGTTTA
FD530034       <-- AAGGGCAAGCGCTAAATAGTTCATTGTCACAGGTGTTGGTGAACTGTCTA
EX773096       --> ..................................................
EW723153       --> AAGGGCAAGCGCTAAACAGTTCATTGTCACAGGTGTTGGTGAACTGTCTA
FY429345       --> AAGGGCAAGCGCTAAACAGTTCATTGTCACAGGTGTTGGTGAACTGTCTA
FD965874       --> AAGGGCAAGCGCTAAATAGTTCATTGTCACAGGTGTTGGTGAACTGTCTA

               951    -   1001
UN00898        --> CGTTACTTCCTGAGAAGGCCTGAAACAGACATCGACAGCTATTAATTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- CGTTACTTCCTGAGAAGGCCTGAAACTGATATCGACAGCTATTAATTAGC
EW728168       <-- CGTTACTTCCTGAGAAGGCCTGAAACAGACATCGACAGCTATTAATTAGC
FD530034       <-- CGTTACTTCCTGAGAAGGCCTGAAACAGACATCGACAGCTATTAATTAGC
EX773096       --> ..................................................
EW723153       --> CGTTACTTCCTGAGAAGGCCTGAAACAGACATCGACAGCTATTAATTAGC
FY429345       --> CGTTACTTCCTGAGAAGGCCTGAAACAGACATCGACAGCTATTAATTAGC
FD965874       --> CGTTACTTCCTGAGAAGGCCTGAAACAGACATCGACAGCTATTAATTAGC

               1001   -   1051
UN00898        --> TTTTTTT-GTTTGTTCCAAAACAAAAAAACTGCTCTTTCTCCTTTTCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- TTTTTTT-GTTTGTTCCAAAACAAAAAAACTGCTCTTTCTCCTTTTCGAA
EW728168       <-- TTTTTTT-GTTTGTTCCAAAACAAAAAAACTGCTCTTTCTCCTTTTTGAA
FD530034       <-- TTTTTTTTGTTTGTTCCAAAACAAAAAAACTGCTCTTTCTCCTTTTCGAA
EX773096       --> ..................................................
EW723153       --> TTTTTTT-GTTTGTTCCAAAACA...........................
FY429345       --> TTTTTTT-GTTTGTTCCAAAACAAAAAAACTGCTCTTTCTCCTTTTCGAA
FD965874       --> TTTTTTT-GTTTGTTCCAAAACAAAAAAACTGCTCTTTCTCCTTTTCGGA

               1051   -   1101
UN00898        --> ATCGCATCTGTTGCGGCATATCAAGTCTTTCTCTTTTGAACATTTTGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- ATCGCATCTGTTGCGGCATATCAAGTCTTTCTCTTTTGAACATTTTGTGG
EW728168       <-- ATCGCATCTGTTGCGGCATATCAAGTCTTTCTCTTTTGAACATTTTGTGG
FD530034       <-- ATCGCATCTGTTGCGGCATATCAAGTCTTTCTCTTTTGAACATTTTGTGG
EX773096       --> ..................................................
EW723153       --> ..................................................
FY429345       --> ATCGCATCTGTTGCGGCATATCAAGTCTTTCTCTTTTGAACATTTTGTGG
FD965874       --> ATCGCATCTGTTGCGGCATATCAAGTCTTTCTCTTTTGAACATTTTGTGG

               1101   -   1151
UN00898        --> AAACTCGTAATACCATCACGTCTGCGAAATGTTTGTGTCTGGAACTGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- AAACTCGTAATACCATCACGTCTGCG........................
EW728168       <-- AAACTCGTAATACCATCACGTCTGCG........................
FD530034       <-- AAACTCGTAATACCATCACGTCTGC.........................
EX773096       --> ..................................................
EW723153       --> ..................................................
FY429345       --> AAACTCGTAATACCATCACGTCTGCGAAATGTTTGTGTCTGGAACTGAAC
FD965874       --> AAACTCGTAATACCATCACGTCTGCGAAATGTTTGTGTCTGGAACTGAAC

               1151   -   1201
UN00898        --> CATTGGGGGCTAAAGAATAAAGATGGTTTGGTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776945       <-- ....................................
EW728168       <-- ....................................
FD530034       <-- ....................................
EX773096       --> ....................................
EW723153       --> ....................................
FY429345       --> CATTGGGGGCTAAAGAATAAAGATGGTTTGGTTCTT
FD965874       --> CATTGGGGGCTAAAGAATAAAGATGGTTTGGTTC..