RadishBase

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Alignment for radish unigene UN01486

               1      -     51
UN01486        --> GGGCACACTTTTAACTTTCTCCTTTTCGTCGTCAGAGACATCTCTCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- GGGCACACTTTTAACTTTCTCCTTTTCGTCGTCAGAGACATCTCTCAATC
EY917927       <-- ...gACACTTTCAACTTTCTCCTTTTCGTCGTCAGAGACATCTCTCAATC
EV541279       <-- .............................aacttctccttttcCTCAATC
FD985869       <-- ..................................................
FD553714       <-- ..................................................
FD554543       <-- ..................................................
FD554146       <-- ..................................................
EX759301       <-- ..................................................
EX761246       <-- ..................................................
FD976538       <-- ..................................................
EY918204       <-- ..................................................
FD961351       <-- ..................................................
EY922199       --> GGGCACACTTTTAACTTTCTCCTTTTCGTCGTCAGAGACATCTCTCAATC
FD536354       --> GGGCACACTTTTAACTTTCTCCTTTTCGTCGTCAGAGACATCTCTCAATC
FD557650       --> GGGCACACTTTTAACTTTCTCCTTTTCGTCGTCAGAGACATCTCTCAATC
FD558200       --> GGGCACACTTTTAACTTTCTCCTTTTCGTTGTCAGAGACATCTCTCAATC
FD963655       --> GGGCACACTTTTAACTTTCTCCTTTTCGTCGTCAGAGACATCTCTCAATC
EY921860       --> ..ggACACTTTCAACTTTCTCCTTTTCGTCGTCAGAGACATCTCTCAATC
FD557228       --> ...gACACTTTTAACTTTCTCCTTTTCGTCGTCAGAGACATCTCTCAATC
FD965674       --> ..ggACACCTTTAACTTTCTCCTTTTCGTCGTCAGAGACATCTCTCAATC
FD990188       --> ..ggACACTTTTAACTTCCTCCTTTTCGTCGTCAGAGACATCTCTCAATC
EV536936       --> .............................aacttctccttttcCTCAATC
EX755145       --> ........................tttttaacttctccttttcCTCAATC
FD980678       --> .............................aacttgtccttttcCTCAATC
EX757731       --> ..................................................
FD558698       --> ..................................................

               51     -    101
UN01486        --> CCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- CCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
EY917927       <-- CCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
EV541279       <-- CCCAAATCTTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
FD985869       <-- ..........................TCGGAAACGGAAGAAAGACTCTGT
FD553714       <-- .......................................AAAGACTCTGT
FD554543       <-- ..........................................GACTCTGT
FD554146       <-- ..................................................
EX759301       <-- ..................................................
EX761246       <-- ..................................................
FD976538       <-- ..................................................
EY918204       <-- ..................................................
FD961351       <-- ..................................................
EY922199       --> CCCAAATCGTCTAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
FD536354       --> CCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
FD557650       --> CCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
FD558200       --> CCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
FD963655       --> CCCAAATCGTCGAAGATAGATTCAGATCGGAAA-GGAAGAAAGACTCTGT
EY921860       --> CCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
FD557228       --> CCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
FD965674       --> CCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
FD990188       --> CCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
EV536936       --> CCCAAATCTTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
EX755145       --> CCCAAATCTTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
FD980678       --> CCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
EX757731       --> .........ggGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGT
FD558698       --> ....................................agggAAGACTCTGT

               101    -    151
UN01486        --> CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. maritimus
EY917927       <-- CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACCCAC--C  Raphanus raphanistrum subsp. landra
EV541279       <-- CTCTTCGACAGATCAACCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985869       <-- CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. landra
FD553714       <-- CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. landra
FD554543       <-- CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGACCACCACC-AC--C  Raphanus raphanistrum subsp. landra
FD554146       <-- ...................................ATCACCACC-AC--C  Raphanus raphanistrum subsp. landra
EX759301       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761246       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976538       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918204       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD961351       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY922199       --> CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. landra
FD536354       --> CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. maritimus
FD557650       --> CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. landra
FD558200       --> CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. landra
FD963655       --> CTCTTCGACAAATCAATCAAAGGACAAGAGAGCCGATCACCACC-ACACC  Raphanus raphanistrum subsp. maritimus
EY921860       --> CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. landra
FD557228       --> CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. landra
FD965674       --> CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. maritimus
FD990188       --> CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. landra
EV536936       --> CTCTTCGACAGATCAACCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755145       --> CTCTTCGACAGATCAACCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980678       --> CTCTTCGACAGATCAACCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. raphanistrum (NY)
EX757731       --> CTCTTCGACAGATCAACCAAAGGACAAGAGAGCCGATCACCACC-AC--C  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558698       --> CTCTTCGACAGATCAATCAAAGGACAAGAGAGCCGACCACCACC-AC--C  Raphanus raphanistrum subsp. landra

               151    -    201
UN01486        --> ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAGGATGGCG  Raphanus raphanistrum subsp. maritimus
EY917927       <-- ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. landra
EV541279       <-- ATCACCACCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985869       <-- ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. landra
FD553714       <-- ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. landra
FD554543       <-- ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. landra
FD554146       <-- ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGCTGGCG  Raphanus raphanistrum subsp. landra
EX759301       <-- ...ACCACCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761246       <-- ...ACCACCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976538       <-- ...................AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918204       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD961351       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY922199       --> ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. landra
FD536354       --> ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAGGATGGCG  Raphanus raphanistrum subsp. maritimus
FD557650       --> ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. landra
FD558200       --> ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGCTGGCG  Raphanus raphanistrum subsp. landra
FD963655       --> ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. maritimus
EY921860       --> ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. landra
FD557228       --> ACCA---TCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. landra
FD965674       --> ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. maritimus
FD990188       --> ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. landra
EV536936       --> ATCACCACCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755145       --> ATCACCACCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980678       --> ACCACCACCACCACCACCAAAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX757731       --> ATCACCACCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558698       --> ACCACCATCACCA------AAGCAAGCACCGTAAGAAGAGCAAGATGGCG  Raphanus raphanistrum subsp. landra

               201    -    251
UN01486        --> TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGACCAAGCATCAAGGATC  Raphanus raphanistrum subsp. maritimus
EY917927       <-- TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra
EV541279       <-- TCGAGAGACCAAGTGAAGGCGTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985869       <-- TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra
FD553714       <-- TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra
FD554543       <-- TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra
FD554146       <-- TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra
EX759301       <-- TCGAGAGACCAAGTGAAGGCGTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761246       <-- TCGAGAGACCAAGTGAAGGCGTCGCACATTCTGATCAAGCATCAGGGATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976538       <-- TCGAGAGACCAAGTGAAGGCGTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918204       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD961351       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY922199       --> TCGAGAGACCAAGTCAAGGCCTTGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra
FD536354       --> TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGACCAAGCATCAAGGATC  Raphanus raphanistrum subsp. maritimus
FD557650       --> TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra
FD558200       --> TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra
FD963655       --> TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. maritimus
EY921860       --> TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra
FD557228       --> TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra
FD965674       --> TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. maritimus
FD990188       --> TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra
EV536936       --> TCGAGAGACCAAGTGAAGGCGTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755145       --> TCGAGAGACCAAGTGAAGGCGTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980678       --> TCGAGAGACCAAGTGAAGGCGTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX757731       --> TCGAGAGACCAAGTGAAGGCGTCGCACATTCTGATCAAGCATCAGGGATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558698       --> TCGAGAGACCAAGTCAAGGCCTCGCACATTCTGATCAAGCATCAAGGATC  Raphanus raphanistrum subsp. landra

               251    -    301
UN01486        --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCGTCATGGCTA  Raphanus raphanistrum subsp. maritimus
EY917927       <-- TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra
EV541279       <-- TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985869       <-- TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra
FD553714       <-- TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra
FD554543       <-- TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra
FD554146       <-- TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra
EX759301       <-- TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761246       <-- TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976538       <-- TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGGTCATCATGACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918204       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD961351       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY922199       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra
FD536354       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCGTCATGGCTA  Raphanus raphanistrum subsp. maritimus
FD557650       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra
FD558200       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra
FD963655       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. maritimus
EY921860       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra
FD557228       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra
FD965674       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. maritimus
FD990188       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra
EV536936       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755145       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980678       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGGTCATCATGACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX757731       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558698       --> TCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGATCATCATGACTA  Raphanus raphanistrum subsp. landra

               301    -    351
UN01486        --> CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. maritimus
EY917927       <-- CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
EV541279       <-- CCACCAGAGAAGCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985869       <-- CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
FD553714       <-- CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
FD554543       <-- CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
FD554146       <-- CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
EX759301       <-- CCACCAGAGAAGCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761246       <-- CCACCAGAGAAGCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976538       <-- CCACCAGAGAAGCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918204       <-- ...CCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
FD961351       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY922199       --> CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
FD536354       --> CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. maritimus
FD557650       --> CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
FD558200       --> CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
FD963655       --> CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. maritimus
EY921860       --> CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
FD557228       --> CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCAATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
FD965674       --> CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. maritimus
FD990188       --> CCACCAGAGAATCAGCCGTCAAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra
EV536936       --> CCACCAGAGAAGCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755145       --> CCACCAGAGAAGCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980678       --> CCACCAGAGAAGCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX757731       --> CCACCAGAGAAGCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558698       --> CCACCAGAGAATCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATC  Raphanus raphanistrum subsp. landra

               351    -    401
UN01486        --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. maritimus
EY917927       <-- CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
EV541279       <-- CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCGGCTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985869       <-- CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
FD553714       <-- CTTTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
FD554543       <-- CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
FD554146       <-- CTCTCTGGCAAAGCCTACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
EX759301       <-- CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCGGCTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761246       <-- CTTTCTGGCAAAGCCAACTTCGAGGATGTGGCGGCTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976538       <-- CTTTCTGGCAAAGCCAACTTCGAGGATGTCGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918204       <-- CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
FD961351       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY922199       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
FD536354       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. maritimus
FD557650       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
FD558200       --> CTCTCTGGCAAAGCCTACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
FD963655       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCATGTTTCCGACTG  Raphanus raphanistrum subsp. maritimus
EY921860       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
FD557228       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
FD965674       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. maritimus
FD990188       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra
EV536936       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCGGCTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755145       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCGGCTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980678       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTCGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX757731       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCGGCTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558698       --> CTCTCTGGCAAAGCCAACTTCGAGGATGTGGCCACTCGTGTTTCCGACTG  Raphanus raphanistrum subsp. landra

               401    -    451
UN01486        --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. maritimus
EY917927       <-- TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
EV541279       <-- TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGTCGAGGTCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985869       <-- TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
FD553714       <-- TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
FD554543       <-- TAGCTTTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
FD554146       <-- TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
EX759301       <-- TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGTCGAGGTCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761246       <-- TAGTTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGTCGAGGTCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976538       <-- TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918204       <-- TAGCTTTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
FD961351       <-- .......................ATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. maritimus
EY922199       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
FD536354       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. maritimus
FD557650       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
FD558200       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
FD963655       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCACA  Raphanus raphanistrum subsp. maritimus
EY921860       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
FD557228       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
FD965674       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. maritimus
FD990188       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra
EV536936       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGTCGAGGTCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755145       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGTCGAGGTCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980678       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX757731       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGTCGAGGTCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558698       --> TAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAA  Raphanus raphanistrum subsp. landra

               451    -    501
UN01486        --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. maritimus
EY917927       <-- TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra
EV541279       <-- TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGAGATATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985869       <-- TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra
FD553714       <-- TGCGGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra
FD554543       <-- TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra
FD554146       <-- TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra
EX759301       <-- TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGAGATATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761246       <-- TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGAGATATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976538       <-- TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGAGATATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918204       <-- TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra
FD961351       <-- TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. maritimus
EY922199       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra
FD536354       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. maritimus
FD557650       --> TGCGGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra
FD558200       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra
FD963655       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. maritimus
EY921860       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra
FD557228       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra
FD965674       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. maritimus
FD990188       --> TGCAGAAACCGTTTGAGGA...............................  Raphanus raphanistrum subsp. landra
EV536936       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGAGATATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755145       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGAGATATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980678       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGAGATATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX757731       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGAGATATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558698       --> TGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGTGATATA  Raphanus raphanistrum subsp. landra

               501    -    551
UN01486        --> AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
EY917927       <-- AGCGAGATTGTGGACACAGACAGTGGAGTCCCTATCATAAAGAGAACAGC
EV541279       <-- AGCAAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD985869       <-- AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD553714       <-- AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD554543       <-- AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD554146       <-- AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
EX759301       <-- AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
EX761246       <-- AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD976538       <-- AGCGAGATTGTGGACACAGACGGTGGAGTCCATATCATAAAGAGAACAGC
EY918204       <-- AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD961351       <-- AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
EY922199       --> AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD536354       --> AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD557650       --> AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD558200       --> AGCGAGATTGTGGACAC.................................
FD963655       --> AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
EY921860       --> AGCGAGATTGTGGACACAGACAGTGGAGTCCCTATCATAAAGAGAACAGC
FD557228       --> AGCGAGAT-GTGGACACAGACAGT..........................
FD965674       --> AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD990188       --> ..................................................
EV536936       --> AGCAAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
EX755145       --> AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD980678       --> AGCGAGATTGTGGACACAGACGGTGGAGTCCATATCATAAAGAGAACAGC
EX757731       --> AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC
FD558698       --> AGCGAGATTGTGGACACAGACAGTGGAGTCCATATCATAAAGAGAACAGC

               551    -    601
UN01486        --> TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- TTGGTCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
EY917927       <-- TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
EV541279       <-- TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD985869       <-- TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD553714       <-- TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD554543       <-- TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD554146       <-- TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
EX759301       <-- TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
EX761246       <-- TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD976538       <-- TTGATCTGTTTATCTCTTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
EY918204       <-- TTGATCTGTTTATTTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD961351       <-- TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
EY922199       --> TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAA-GTT
FD536354       --> TTGGTCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD557650       --> TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD558200       --> ..................................................
FD963655       --> TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
EY921860       --> TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD557228       --> ..................................................
FD965674       --> TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD990188       --> ..................................................
EV536936       --> TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
EX755145       --> TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD980678       --> TTGATCTGTTTATCTCTTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
EX757731       --> TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT
FD558698       --> TTGATCTGTTTATCTCCTTCAAAGCCTCCTCCTATCATGTACCAAAAGTT

               601    -    651
UN01486        --> ACCAGCTTTTTTTATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- ACCAGCTTTTTTTATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. maritimus
EY917927       <-- ACCAGCTTTTTT-ATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. landra
EV541279       <-- ACCAGCTTTTTGATTTTACCTTCTCTTCTTTGACCAAGGATAGAAGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985869       <-- ACCAGCCTTTTTTATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. landra
FD553714       <-- ACCAGCTTTTTTTATTTACCTTTTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. landra
FD554543       <-- ACCAGCTTTTTTTATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. landra
FD554146       <-- ACCAGCTTTTTTTATTTACCTTCTCTTCT.....................  Raphanus raphanistrum subsp. landra
EX759301       <-- ACCAGCTTTTTGATTTTACCTTTTCTTCTTTGACCAAGGATAGAAGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761246       <-- ACCAGCTTTTTGATTTTACCTTTTCTTCTTTGACCAAGGATAGAAGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976538       <-- ACCAGCTTTTT-GATTTACCTTTTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918204       <-- ACCAGCTTTTTTTATTTACCTTTTTTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. landra
FD961351       <-- ACCAGCTTTTTTTATTTACCTTTTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. maritimus
EY922199       --> ACCAGCTTTTTTTATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. landra
FD536354       --> ACCAGCTTTTTTTATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. maritimus
FD557650       --> ACCAGCTTTTTTTATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. landra
FD558200       --> ..................................................  Raphanus raphanistrum subsp. landra
FD963655       --> ACCAGCTTTTTTTATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. maritimus
EY921860       --> ACCAGCTTTTTT-ATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. landra
FD557228       --> ..................................................  Raphanus raphanistrum subsp. landra
FD965674       --> ACCAGCTTTTTTTATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. maritimus
FD990188       --> ..................................................  Raphanus raphanistrum subsp. landra
EV536936       --> ACCAGCTTTTTGATTTTACCTTCTCTTCTTTGACCAAGGATAGAAGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755145       --> ACCAGCTTTTTGATTTTACCTTCTCTTCTTTGACCAAGGATAGAAGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980678       --> ACCAGCTTTTT-GATTTACCTTTTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX757731       --> ACCAGCTTTTTGATTTTACCTTCTCTTCTTTGACCAAGGATAGAAGATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558698       --> ACCAGCTTTTTTTATTTACCTTCTCTTCTTTGACCAAAGATAGAAGATTG  Raphanus raphanistrum subsp. landra

               651    -    701
UN01486        --> AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- AATAATAAGATAAAAAGCTTTGCTATC.......................
EY917927       <-- AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
EV541279       <-- AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
FD985869       <-- AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
FD553714       <-- AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
FD554543       <-- AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
FD554146       <-- ..................................................
EX759301       <-- AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
EX761246       <-- AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
FD976538       <-- AATAATAAGCTAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
EY918204       <-- AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTTTGCATCTTTA
FD961351       <-- AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
EY922199       --> AA................................................
FD536354       --> AATAATAAGATAAAAAGCTTTGCTATC.......................
FD557650       --> AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
FD558200       --> ..................................................
FD963655       --> AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
EY921860       --> AATAATAAGATAAAA-GCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
FD557228       --> ..................................................
FD965674       --> AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
FD990188       --> ..................................................
EV536936       --> AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
EX755145       --> AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
FD980678       --> AATAATAAGCTAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
EX757731       --> AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA
FD558698       --> AATAATAAGATAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTA

               701    -    751
UN01486        --> TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- ..................................................
EY917927       <-- TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATCTT
EV541279       <-- TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATCTT
FD985869       <-- TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGCATCTT
FD553714       <-- TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATCTT
FD554543       <-- TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATCTT
FD554146       <-- ..................................................
EX759301       <-- TATGGATTTGA.......................................
EX761246       <-- TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAAC........
FD976538       <-- TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATCTT
EY918204       <-- TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATTTT
FD961351       <-- TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATCTT
EY922199       --> ..................................................
FD536354       --> ..................................................
FD557650       --> TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATCTT
FD558200       --> ..................................................
FD963655       --> TATGGATTTGATACAACCAAACATATGATAAAGACA-GAAACTGTATCTT
EY921860       --> TATGGATT-GATACA-CCAAACATATGATAA-GACA-GAA-CTGTATCTT
FD557228       --> ..................................................
FD965674       --> TATGGATT-GATACAACCAAACATATGATAAAGACA-G-AACTGTATCTT
FD990188       --> ..................................................
EV536936       --> TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATCTT
EX755145       --> TATGGATTTGATACAACCAAACATATGATAAAGACA-GAAACTGTATCTT
FD980678       --> TATGGATTTGATACAACCAAACATATGATAAAGACA-GAAACTGTATC..
EX757731       --> TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATCTT
FD558698       --> TATGGATTTGATACAACCAAACATATGATAAAGACAAGAAACTGTATCTT

               751    -    801
UN01486        --> AGTTACTTCTCATAATTTCATAATAACGAATTTCTGTTGTGACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531842       <-- ..............................................
EY917927       <-- AGTTACTTCTCATAATTTCATAATAACGAATTTCTGTTGTGACGAG
EV541279       <-- AGTTACTTCTCATAATTTCATAATAACGAATTTCTGTTGTGACag.
FD985869       <-- AGTTACTTCTCATAATTTCATAATAACGAATTTCTGTTGTGAC...
FD553714       <-- AGTTACTTCTCATAATTTCATAATAACGAATTTCTGTTGTGAC...
FD554543       <-- AGTTACTTCT-ATAATTTCATAATAACGAATTTCTGTTGTG.....
FD554146       <-- ..............................................
EX759301       <-- ..............................................
EX761246       <-- ..............................................
FD976538       <-- AGTTACTTCTCATAATTTCATAATAACGAATTTCTGTTGTGAC...
EY918204       <-- AGTTACTTTTCATAATTT............................
FD961351       <-- AGTTACTTCTCATAATTTCATAATAACGAATTTCTGTTGTGAC...
EY922199       --> ..............................................
FD536354       --> ..............................................
FD557650       --> AGTTACTTCTCATAATTTCATAA.......................
FD558200       --> ..............................................
FD963655       --> AGTTACTTCTCATAATTTCATAATAACGAATTTCTGTTGT......
EY921860       --> AGT-ACTTCTCATA-TTTCATA-TA-CGAATT-CTGT-GTGACGAG
FD557228       --> ..............................................
FD965674       --> AGTTACTTCTCATAtttc............................
FD990188       --> ..............................................
EV536936       --> AGTTACTTCTCATAATTTCATAATAACGAATTTCTGTTGTGACag.
EX755145       --> AGTTACTT-TCATA................................
FD980678       --> ..............................................
EX757731       --> AG............................................
FD558698       --> AGTTACTTCT-ATAATTTCATAATAACGAATTTCTGTTGTG.....