1      -     51
UN03047        --> GTAAAAGTTGCTCTCATTAGTAAATTAAGGAAACGAAATGTGTCATTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- ..........................AAGGAAACGAAATGTGTCATTAAT
FY433352       <-- .........................................GTCATTAAT
FD571605       <-- ..................................................
EV527880       <-- ..................................................
FD575407       --> GTAAAAGTTGCTCTCATTAGTAAATTAAGGAAACGAAATGTGTCATTAAT
EV532008       --> ..........................AAGGAAACGAAATGTGTCATTAAT
EY904575       --> ..........................AAGGAAACGAAATGTGTCATTAAT
FD942307       --> ..........................AAGGAAACGAAATGTGTCATTAAT
FD547586       --> ..........................agGGAAACGAAATGTGTCATTAAT
EV547481       --> .......................................GTGTCATTAAT
FD531464       --> ..........................................aCATTAAT

               51     -    101
UN03047        --> CATAATATTAGAGAGGATCTCATGATAATACACAGGCTACTATACAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- CATAATATTAGAGAGGATCTCATGATAATACACAGGCTACTATACAGCCA
FY433352       <-- CATAATATTAGAGAGGATCTCATGATAATACACAGGCTACTATACAGCCA
FD571605       <-- ..................................................
EV527880       <-- ..................................................
FD575407       --> CATAATATTAAAGAGGATCTCATGATAATACACAGGCTACTATACAGCCA
EV532008       --> CATAATATTAGAGAGGATCTCATGATAATACACAGGCTACTATACAGCCA
EY904575       --> CATAATATTAGAGAGGATCTCATGATAATACACAGGCTACTATACAGCCA
FD942307       --> CATAATATTAGAGAGGATCTCATGATAATACACAGGCTACTATACAGCCA
FD547586       --> CATAATATTAGAGAGGATCTCATGATAATACACAGGCTACTATACAGCCA
EV547481       --> CATAATATTAGAGAGGATCTCATGATAATACACAGGCTACTATACAGCCA
FD531464       --> CATAATATTAGAGAGGATCTCATGATAATACACAGGCTACTATACAGCCA

               101    -    151
UN03047        --> GGTCTGGACCCTCACTTACAATTACGATGCATACATACATAAACCATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- GGTCTGGACCCTCACTTACAATTAAGATGCATACATACATAAACCATACA  Raphanus sativus cv Early Scarlet Globe
FY433352       <-- GGTCTGGACCCTCACTTACAATTACGATGCATACATACATAAACCATACA  Raphanus sativus cv GSK3-1
FD571605       <-- ..............CTTACAATTAAGATGCATACATACATAAACCATACA  Raphanus sativus cv Early Scarlet Globe
EV527880       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD575407       --> GGTCTGGACCCTCACTTACAATTAAGATGCATACATACATAAACCATACA  Raphanus sativus cv Early Scarlet Globe
EV532008       --> GGTCTGGACCCTCACTTACAATTACGATGCATACATACATAAACCATACA  Raphanus raphanistrum subsp. maritimus
EY904575       --> GGTCTGGACCCTCACTTACAATTAAGATGCATACATACATAAACCATACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942307       --> GGTCTGGACCCTCACTTACAATTAAGATGCATACATACATAAACCATACA  Raphanus sativus cv Early Scarlet Globe
FD547586       --> GGTCTGGACCCTCACTTACAATTACGATGCATACATACATAAACCATACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547481       --> GGTCTGGACCCTCACTTACAATTACGATGCATACATACATAAACCATACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD531464       --> GGTCTGGACCCTCACTTACAATTACGATGCATACATACATAAACCATACA  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN03047        --> T--TATATAATATATGAGTTGGCCTAACAATGACCCGAAACCCTAGCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- T--TATATAATATATGAGTTGGCCTAACAATGACCCGAAACCCTAGCTAT
FY433352       <-- TATTATATAATATATGAGTTGGCCTAACAATGACCCGAAACCCTAGCTAT
FD571605       <-- T--TATATAATATATGAGTTGGCCTAACAATCACCCGAAACCCTAGCTAT
EV527880       <-- ..................................................
FD575407       --> T--TATATAATATATGAGTTGGCCTAACAATGACCCGAAACCCTAGCTAT
EV532008       --> T--TATATAATATATGAGTTGGCCTAACAATGACCCGAAACCCTAGCTAT
EY904575       --> T--TATATAATATATGAGTTGGCCTAACAATGACCCGAAACCCTAGCTAT
FD942307       --> T--TATATAATATATGAGTTGGCCTAACAATGACCCGAAACCCTAGCTAT
FD547586       --> T--TATGTAATATATGAGTTGGCCTAACAATGACCCGAAACCCTAGCTAT
EV547481       --> T--TATATAATATATGAGTTGGCCTAACAATGACCCGAAACCCTAGCTAT
FD531464       --> T--TATATAATATATGAGTTGGCCTAACAATGACCCGAAACCCTAGCTAT

               201    -    251
UN03047        --> ATCATAATATTTGAAGTAGAAGGAAACAAATACTCATAATCATAATAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- ATCATAATATTTGAAGTAGAAGGAAACAAATACTCATAATCATAATAAGA
FY433352       <-- ATCATAATATTTGAAGTAGAAGGAAACAAATACTCATAATCATAATAAGA
FD571605       <-- ATCATAATATTTGAAGTAGAAGGAAACAAATACTCATAATCATAATAAGA
EV527880       <-- ...........................................AATAAGA
FD575407       --> ATCATAATATTTGAAGTAGAAGGAAACAAATACTCATAATCATAATAAGA
EV532008       --> ATCATAATATTTGAAGTAGAAGGAAACAAATACTCATAATCATAATAAGA
EY904575       --> ATCATAATATTTGAAGTAGAAGGAAACAAATACTCATAATCATAATAAGA
FD942307       --> ATCATAATATTTGAAGTAGAAGGAAACAAATACTCATAATCATAATAAGA
FD547586       --> ATCATAATATTTGAAGTAGAAGGAAACAAATACTCATAATCATAATAAGA
EV547481       --> ATCATAATATTTGAAGTAGAAGGAAACAAATACTCATAATCATAATAAGA
FD531464       --> ATCATAATATTTGAAGTAGAAGGAAATAAATACTCATAATCATAATAAGA

               251    -    301
UN03047        --> TAAATTTTCGTGGCGGAAATCGATGATTTATATCTCAGATTAATTAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- TAAATTTTCGTGGCGGAAATCGATGATTTATATCTCAGATTAATTAGTGA
FY433352       <-- TAAATTTTCGTGGCGGAAATCGATGATTTATATCTCAGATTAATTAGTGA
FD571605       <-- TAAATTTTCGCGGCGGAAATCGATGATTTATATCTCAGATTAATTAGTGA
EV527880       <-- TAAATTTTCGTGGCAGAAATCGATGATTTATATCTCAGATTGATTAGTGA
FD575407       --> TAAATTTTCGCGGCGGAAATCGATGATTTATATCTCAAATTAATTAGTGA
EV532008       --> TAAATTTTCGTGGCAGAAATCGATGATTTATATCTCAGATTGATTAGTGA
EY904575       --> TAAATTTTCGTGGCGGAAATCGATGATTTATATCTCAGATTAATTAGTGA
FD942307       --> TAAATTTTCGTGGCGGAAATCGATGATTTATATCTCAAATTAATTAGTGA
FD547586       --> TAAATTTTCGTGGCAGAAATCGATGATTTATATCTCAGATTGATTAGTGA
EV547481       --> TAAATTTTCGTGGCGGAAATCGATGATTTATATCTCAGATTAATTAGTGA
FD531464       --> CAAATTTTCGTGGCGGAAATCGATGATTTATATCTCAGATTAATTAGTGA

               301    -    351
UN03047        --> GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC
FY433352       <-- GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC
FD571605       <-- GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC
EV527880       <-- GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC
FD575407       --> GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC
EV532008       --> GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC
EY904575       --> GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC
FD942307       --> GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC
FD547586       --> GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC
EV547481       --> GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC
FD531464       --> GAATTTTAGTAATTAAGCAAGCTCCTAATGATGGCTGCCTCGGCGCTGTC

               351    -    401
UN03047        --> GTCGTCCGTTGAAGCCAAAAGTTCCGACAAACGGTCACTGAGATCATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- GTCGTCCGTTGAAGCCAAAAGTTCCGACAAACGATCACTGAGATCATCAA  Raphanus sativus cv Early Scarlet Globe
FY433352       <-- GTCGTCCGTTGAAGCCAAAAGTTCCGACAAACGGTCACTGAGATCATCAA  Raphanus sativus cv GSK3-1
FD571605       <-- GTCGTCCGTTGAAGCCAAAAGTTCCGACAAACGATCACTGAGATCATCAA  Raphanus sativus cv Early Scarlet Globe
EV527880       <-- GTCGTCCGTTGAAGCCAAAAGTTCCGACAAACGGTCACTGAGATCATCAA  Raphanus raphanistrum subsp. maritimus
FD575407       --> GTCCTCCGTTGAAGCCAAAAGTTCCGACAAACGATCACTGAGATCATCAA  Raphanus sativus cv Early Scarlet Globe
EV532008       --> GTCGTCCGTTGAAGCCAAAAGTTCCGACAAACGGTCACTGAGATCATCAA  Raphanus raphanistrum subsp. maritimus
EY904575       --> GTCGTCCGTTGAAGCCAAAAGTTCCGACAAACGATCACTGAGATCATCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942307       --> GTCGTCCGTTGAAGCCAAAAGTTCCGACAAACGATCACTGAGATCATCAA  Raphanus sativus cv Early Scarlet Globe
FD547586       --> GTCGTCCGTTGAAGCCAAAAGTTCCGACAAACGGTAACTGAGATCATCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547481       --> GTCGTCCGTTGAAGCCAAAAGTTCCGACAAACGGTCACTGAGATCATCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD531464       --> GTCGTCCGTTGAAGCCAAAAGTTCCGACAAACGGTCACTGAGATCATC--  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN03047        --> CCTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCTTGTAGCACTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- CCTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCTTGTAGCACTTTA
FY433352       <-- CCTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCTTGTAGCACTTTA
FD571605       <-- CCTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCTTGTAGCACTTTA
EV527880       <-- CCTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCTTGTAGCACTTTA
FD575407       --> CCTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCTTGTAGCACTTTA
EV532008       --> CCTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCTTGTAGCACTTTA
EY904575       --> CCTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCTTGTAGCACTTTA
FD942307       --> CCTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCTTGTAGCACTTTA
FD547586       --> CCTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCTTGTAGCACTTTA
EV547481       --> CCTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCCTGTAGCACTTTA
FD531464       --> -CTCTCTGTGTAAGTTCCTGATGTAGTTGCAAGTCTCTTGTAGCACTTTA

               451    -    501
UN03047        --> GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG
FY433352       <-- GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG
FD571605       <-- GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG
EV527880       <-- GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG
FD575407       --> GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG
EV532008       --> GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG
EY904575       --> GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG
FD942307       --> GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG
FD547586       --> GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG
EV547481       --> GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG
FD531464       --> GATGCTGACACCTTGTCAGAACGGCGGCGTCGGAGCTCAGGGATGAGGTG

               501    -    551
UN03047        --> TTGGAGCTTAGTAACAAGATCGGTAATCTGATCATCAGAGATTCTTGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- TTGGAGCTTAGTAACAAGATCGGTAATCTGATCATCAGAGATTCTTGAGC
FY433352       <-- TTGGAGCTTAGTAACAAGATCGGTAATCTGATCATCAGAGATTCTTGAGC
FD571605       <-- TTGGAGCTTAGTAACAAGATCGGTAATCTGATCATCAGAGATTCTTGAGC
EV527880       <-- TTGGAGCTTAGTAACAAGATCGGTAATCTGATCATCAGAGATTCTTGAGC
FD575407       --> TTGGAGCT..........................................
EV532008       --> TTGGAGCTTAGTAACAAGATCGGTAATCTGATCATCAGAGATTCTTGAGC
EY904575       --> TTGGAGCTTAGTAACAAGATCGGTAATCTGATCAT...............
FD942307       --> TTGGAGCTTAGTAACAAGATCGGTAATCTGATCATCAGAGATTCTTGAGC
FD547586       --> TTGGAGCTTAGTAACAAGATCGGTAATCTGATCATCAGAAATTCTTGAGC
EV547481       --> TTGGAGCTTAGTAACAAGATCGGTAATCTGATCATCAGAAATTCTTGAGC
FD531464       --> TTGGAGCTTAGTAACAAGATCGGTAATCTGATCATCAGAGATTCTTGAGC

               551    -    601
UN03047        --> TTCCTGACTGTCGTGAACGTGATGATCTTCTGCTCGACATCTTCTTTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- TTCCTGACTGTCGTGAACGTGATGATCTTCTGCTCGACATCTTCTTTAGT
FY433352       <-- TTCCTGACTGTCGTGAACGTGATGATCTTCTGCTCGACATCTTCT.....
FD571605       <-- TTCCTGACTGTCGTGAACGTGATGATCTTCTGCTCGACATCTTCTTTAGT
EV527880       <-- TTCCTGACTGTCGTGAACGTGATGATCTTCTGCTCGACATCTTCTTTAGT
FD575407       --> ..................................................
EV532008       --> TTCCTGACTGTCGTGAACGTGATGATCTTCTGCTCGACATCTTCTTTAGT
EY904575       --> ..................................................
FD942307       --> TTCCTGACTGTCGTGAACGTGATGATCTTCTGCTCGACATCTTCTTTAGT
FD547586       --> TTCCTGACTGTCGTGAACGTGATGATCTTCTGCTCGACATCTTCTTTAGT
EV547481       --> TTCCTGACTGTCGTGAACGTGATGATCTTCTGCTCGACATCTTCTTTAGT
FD531464       --> TTCCTGACTGTCGTGAACGTGATGATCTTCTGCTCGACATCTTCTTTAGT

               601    -    651
UN03047        --> AAGTGGCTTTGTTTGTTTGTGTGTGTGTGGAGAGAGAGGAATGCAGTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- AAGTGGCTTTGTTTGTTTGTGTGTGTGTGGAGAGAGAGGAATGCAGTAAG
FY433352       <-- ..................................................
FD571605       <-- AAGTGGCTTTGTTTGTTTGTGTGTGTGTGGAGAGAGAGGAATGCAGTAAG
EV527880       <-- AAGTGGCTTTGTTTGTTTGTGTGTGTGTGGAGAGAGAGGAATGCAGTAAG
FD575407       --> ..................................................
EV532008       --> AAGTGGCTTTGTTTGTTTGTGTGTGTGTGGAGAGAGAGGAATGCAGTAAG
EY904575       --> ..................................................
FD942307       --> AAGTGGCTTTGTTTGTTTGTGTGTGTGTGGAGAGAGAGGAA.........
FD547586       --> AAGTGGCTTTGTTTGTTTGTGTGTGTGTGGAGAGAGAGGAATGCAGTAAG
EV547481       --> AAGTGGCTTTGTTTGTTTGTGTGTGTGTGGAGAGAGAGGAATGCAGTAAG
FD531464       --> AAGTGGCTTTGTTTGTTTGTGTGTGTGTGGAGAGAGAGGAATGCAGTAAG

               651    -    701
UN03047        --> GATAAGTAGTTGTTGTGTCAGAGAGAGAAAGAGAATAAGAGTGGAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- GATAAGTAGTTGTTGTGTCAGAGAGAGAAAGAGAATAAGAGTGGAGATGA
FY433352       <-- ..................................................
FD571605       <-- GATAAGTAGTTGTTGTGTCAGAGAGAGAAAGAGAATAAGAGTGGAGATGA
EV527880       <-- GATAAGTAGTTGTTGTGTCAGAGAGAGAAAGAGAATAAGAGTGGAGAAGA
FD575407       --> ..................................................
EV532008       --> GATAAGTAGTTGTTGTGTCAGAGAGAGAAAGAGAATAAGAGTGGAGAAGA
EY904575       --> ..................................................
FD942307       --> ..................................................
FD547586       --> GATAAGTAGTTGTTGTGTCAGAGAGAGAAAGAGAATAAGAGTGGAGAAGA
EV547481       --> GATA..............................................
FD531464       --> GATAAGTAGTTGTTGTGTCAGAGAGAGAAAGAGAATAAGAGTGGAGAAGA

               701    -    751
UN03047        --> CGAAGAAGATTGTTTTGAAGATGGAGGAGCAAAAGGGGACGTGTTTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- CGTAGAAGATTGTTTTcc................................
FY433352       <-- ..................................................
FD571605       <-- CGAAGAAGATTGTTTTcc................................
EV527880       <-- CGAAGAAGATTGTTTTGAAGATGGAGGAGCAAAAGGGGACGTGTTTTTAT
FD575407       --> ..................................................
EV532008       --> CGAAGAAGATTGTTTTGAAGATGGAGGAGCAAAAGGGGACGTGTTTTTAT
EY904575       --> ..................................................
FD942307       --> ..................................................
FD547586       --> CGAAGAAGATTc......................................
EV547481       --> ..................................................
FD531464       --> CGAAGAAGATTGTTTTGAAGATGGAGGAGCAAAGGGGGACGTGTTTTTAT

               751    -    801
UN03047        --> AATGCAAATTTATGAGGAGAGAGAGAAGAAGAAGGAGGAAGAAGATAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD946123       <-- ..................................................
FY433352       <-- ..................................................
FD571605       <-- ..................................................
EV527880       <-- AATGCAAATTTATGAGGAGAGAGAGAAGAAGAAGGAGGAAGAAGATAGAC
FD575407       --> ..................................................
EV532008       --> AATGCAAATTTATGAGGAGAGAGAGAAGAAGAAGGAGGAAGAAGATAGAC
EY904575       --> ..................................................
FD942307       --> ..................................................
FD547586       --> ..................................................
EV547481       --> ..................................................
FD531464       --> AATGCAAATTTATGAG..................................

               801    -    851
UN03047        --> AAGAGAGACAAGTGCCC
                   ~~~~~~~~~~~~~~~~~
FD946123       <-- .................
FY433352       <-- .................
FD571605       <-- .................
EV527880       <-- AAGAGAGACAAGTGCCC
FD575407       --> .................
EV532008       --> AAGAGAGACAAGTGCCC
EY904575       --> .................
FD942307       --> .................
FD547586       --> .................
EV547481       --> .................
FD531464       --> .................