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Alignment for radish unigene UN03578

               1      -     51
UN03578        --> GGCAACAAAGGAAGTCGATATAAGAAAATGATAACACGTCTGATGGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- ..................................................
EY941479       <-- ..................................................
FD557206       <-- ..................................................
FD957808       <-- ..................................................
EY898770       <-- ..................................................
FD951451       --> GGCAACAAAGGAAGTCGATATAAGAAAATGATAACACGTCTGATGGAAAT
EY937054       --> .........................................GATGGAAAT
FD553362       --> .........................................ggTGGAAAT
FD953441       --> ..................................................
EW719583       --> ..................................................

               51     -    101
UN03578        --> GTGTTAAAGTAAGATTAATGTAAAGACAAAAGAGCAAAGAGACACTACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- ..................................................
EY941479       <-- ..................................................
FD557206       <-- ..................................................
FD957808       <-- ..................................................
EY898770       <-- ..................................................
FD951451       --> GTGTTAAAGTAAGATTAATGTAAAGACAAAAGAGCAAAGAGACACTACTA
EY937054       --> GTGTTAAAGTAGGATTAATGTAAAGACAAAAGAGCAAAGAGACACTACTA
FD553362       --> GTGTTAA-GTAAGATTAATGTAAAGACAAAAGAGCAAAGAGACACTACTA
FD953441       --> .............................AAGAGCAAAGAGACACTACTA
EW719583       --> ..................................................

               101    -    151
UN03578        --> CCAACTGAAAACATCTTCAAAACATGTCCATACTAATACAACACAAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- ..................................................
EY941479       <-- ..................................................
FD557206       <-- ..................................................
FD957808       <-- ..................................................
EY898770       <-- ..................................................
FD951451       --> CCAACTGAAAACATCTTCAAAACATGTCAATACTAATACAACACAAGAGC
EY937054       --> CCAACTGAAAACATCTTCAAAACATGTCCATACTAATACAACACAAGAGC
FD553362       --> CCAACTGAAAACATCTTCAAAACATGTCCATACTAATACAACACAAGAGC
FD953441       --> CCAACTGAAAACATCTTCAAAACATGTCCATACTAATACAACACAAGAGC
EW719583       --> ..................................................

               151    -    201
UN03578        --> AGAGAGATACTGTTATCACCTTAAAACATCATGCTCTATCTCTACTTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- ..................................................
EY941479       <-- ..................................................
FD557206       <-- ..................................................
FD957808       <-- ..................................................
EY898770       <-- ..................................................
FD951451       --> AGAGAGATACTGTTATCACCTTAAAACATCATGCTCTATCTCTACTTGCA
EY937054       --> AGAGAGATACTGTTATCACCTTAAAACATCATGCTCTATCTCTACTTGCA
FD553362       --> AGAGAGATACTGTTATCACCTTAAAACATCATGCT--ATCTCTACTTGCA
FD953441       --> AGAGAGATACTGTTATCACCTTAAAACATCATGCTCTATCTCTACTTGCA
EW719583       --> ..................................................

               201    -    251
UN03578        --> AAACAAATATTAGAAGAGGCTTTCGTAACTAAGGAAGGACCTGACTCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- ..................................................
EY941479       <-- ..................................................
FD557206       <-- ..................................................
FD957808       <-- ..................................................
EY898770       <-- ..................................................
FD951451       --> AAACAAATATTAGAAGAGGCTTTCGTAACTAAGGAAGGACCTGACTCTGC
EY937054       --> AAACAAATATTAAAAGAGGCTTTCGTAACTAAGGAAGGACCTGACTCTGC
FD553362       --> AAACAAATATTAGAAGAGGCTTTCGTAACTAAGGAAGGACCTGACTCTGC
FD953441       --> AAACAAATATTAGAAGAGGCTTTCGTAACTAAGGAAGGACCTGACTCTGC
EW719583       --> ..................................................

               251    -    301
UN03578        --> TTGATAAAAAAAAAAAAATACGGAAGGGAATGTTTTTGATGTTGCCCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- ..................................................
EY941479       <-- ..................................................
FD557206       <-- ..................................................
FD957808       <-- ..................................................
EY898770       <-- ..................................................
FD951451       --> TTGATAAAAAAAAAAA--TACGGAAGGGAATGTTTTTGATGTTGCCCCAG
EY937054       --> TTGATAAAAAAAAAAAAATACGGAAGGGAATGTTTTTGATGTTGCCCCAA
FD553362       --> TTGATAAAAAAAAAAAA-TACGGAAGGGAATGTTTTTGATGTTGCCCCAG
FD953441       --> TTGATAAAAAAAAAAAAATACGGAAGGGAATGTTTTTGATGTTGCCCCAG
EW719583       --> ..............................................CCAG

               301    -    351
UN03578        --> AATTTAAAACCCCAAAACCAAGACCTTTGTTCCTTAATTT-AAAGACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- ..................................aatTTT-AAAGACAAC
EY941479       <-- .....................................TTT-AAAGACAAC
FD557206       <-- ..................................................
FD957808       <-- ..................................................
EY898770       <-- ..................................................
FD951451       --> AATTTAAAACCCCAAAACCAAGACCTTTGTTCCTTAATTT-AAAGACAAC
EY937054       --> AATTTAAAACCCCAAAACCAAGACCTTTGTTCCTTAATTT-AAAGACAAC
FD553362       --> AATTTAAAACCCCAAAACCAAGAC-TTTGTTCCTTAATTT-AAAGACAAC
FD953441       --> AATTTAAAACCCCAAAACCAAGACCTTTGTTCCTTAATTT-AAAGACAAC
EW719583       --> AATTTAAAACCC-AAAACCAAGAC-TTTGTTCCTTAATTTTAAAGACAAC

               351    -    401
UN03578        --> TATTCGTTAAGGAACAAACCGTTGAGAAGCTCGGTGGATGAACTCTCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- TAATCGTTAAGGAACAAACCGTTGAGAAGCTCGGTGGATGAACTCTCGTT
EY941479       <-- TATTCGTTAAGGAACAAACCGTTGAGAAGCTCGGTGGAAGAACTCTCGTT
FD557206       <-- ..................................................
FD957808       <-- ..................................................
EY898770       <-- ..................................................
FD951451       --> TATTCGTTAAGGAACAAACCGTTGAGAAGCTCGGTGGATGAACTCTCGTT
EY937054       --> TATTCGTTAAGGAACAAACCGTTGAGAAGCTCGGGGGAAGAACTCTCGTT
FD553362       --> TATTCGTTAAGGAACAAACCGTTGAGAAGCTCGGTGGATGAACTTTCGTT
FD953441       --> TATTCGTTAAGGAACAAACCGTTGAAAAGCTCGGTGGATGAACTCTCGTT
EW719583       --> TAATCGTTAAGGAACAAACCGTTGAGAAGCTCGGTGGATGAACTCTCGTT

               401    -    451
UN03578        --> TCCGTTTTCATCAAAGAAGCCATTTTCTGCGCTTTCTTTCCTCAGCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- TCCGTTTTCATCAAAGAAGCCCTTTTCAGCACTTTCTTTCCTCAGCTTCC  Raphanus sativus var. oleiformis
EY941479       <-- TCCGTTTTCATCAAAGAAGCCATTTTCTGCGCTTTCTTTC-TCAGCTTCC  Raphanus sativus cv Early Scarlet Globe
FD557206       <-- .........................tcagcaCTTTCTTTCCTCAGCTTCC  Raphanus raphanistrum subsp. landra
FD957808       <-- .........................................TCAGCTTCC  Raphanus sativus cv Rat-Tail Radish #3870
EY898770       <-- ...........................................AGCTTCC  Raphanus raphanistrum subsp. maritimus
FD951451       --> TCCGTTTTCATCAAAGAAGCCATTTTCTGCGCTTTCTTTCCTCAGCTTCC  Raphanus sativus cv Rat-Tail Radish #3870
EY937054       --> TCCGTTTTCATCAAAAAAGCCATTTTCTGCGCTTTCTTTCCTCAGCTTCC  Raphanus sativus cv Early Scarlet Globe
FD553362       --> TCCGTTTTCATCAAAGAAGCCCTTTTCAGCACTTTCTTTCCTCAGCTTCC  Raphanus raphanistrum subsp. landra
FD953441       --> TCCGTTTTCATCAAAGAAGCCATTTTCTGCGCTTTCTTTCCTCAGCTTCC  Raphanus sativus cv Rat-Tail Radish #3870
EW719583       --> TCCGTTTTCATCAAAGAAGCCCTTTTCAGCACTTTCTTTCCTCAGCTTCC  Raphanus sativus var. oleiformis

               451    -    501
UN03578        --> GCTCTTCAACGATGGATTCTTCTGTACCAGCACAGAAATTCCGTCTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- GCTCTTCAACGATGGATTCTTCTGTACCAGCACAGAAATTCCGTCTTCCT
EY941479       <-- GCTCTTCAACGATGGATTCTTCTGTACCAGCACAGAAATTCCGTCTTCCT
FD557206       <-- GCTCTTCAACGATGGATTCTTCTGTACCAGCACTGAAATTCCGTCTTCCT
FD957808       <-- GCTCTTCAACGATGGATTCTTCTGTACCAGCACAGAAATTCCGTCTTCCT
EY898770       <-- GCTCTTCAACGATGGATTCTTCTGTACCAGCACAGAAATTCCGTCTTCCT
FD951451       --> GCTCTTCAACGATGGATTCTTCTGTACCAGCACAGAAATTCCGTCTTCCT
EY937054       --> GCTCTTCAACGATGGATTCTTCTGTACCAGCACAGAAATTCCGTCTTCCT
FD553362       --> GCTCTTCAACGATGGATTCTTCTGTACCAGCACTGAAATTCCGTCTTCCT
FD953441       --> GCTCTTCAACGATGGATTCTTCTGTACCAGCACAGAAATTCCGTCTTCCT
EW719583       --> GCTCTTCAACGATGGATTCTTCTGTACCAGCACAGAAATTCCGTCTTCCT

               501    -    551
UN03578        --> TGCCTAGCTGGTTTATCAGCCACTATGAATTTGCTTCCATCTCGGACACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- TGCCTAACTGGTTTATCAGCCACTATGAATTTGCTTCCATCTCGGACACG
EY941479       <-- TGCCTAGCTGGTTTATCAGCCACTATGAATTTGCTTCCATCTCGGACACG
FD557206       <-- TGCCTAGCTGGTTTATCAGCCACTATGAATTTGCTTCCATCTCGGACACG
FD957808       <-- TGCCTAGCTGGTTTATCAGCCACTATGAATTTGCTTCCATCTCGGACACG
EY898770       <-- TGCCTAGCTGGTTTATCAGCCACTATGAATTTGCTTCCATCTCGGACACG
FD951451       --> TGCCTAGCTGGTTTATCAGCCACTATGAATTTGCTTCCATCTCGGACACG
EY937054       --> TGCCTAGCTGGTTTATCAGCCACTATGAATTTGCTTCCATCTCGGACACG
FD553362       --> TGCCTAGCTGGTTTATCAGCCACTATGAATTTGCTTCCATCTCGGACACG
FD953441       --> TGCCTAGCTGGTTTATCAGCCACTATGAATTTGCTTCCATCTCGGACACG
EW719583       --> TGCCTAACTGGTTTATCAGCCACTATGAATTTGCTTCCATCTCGGACACG

               551    -    601
UN03578        --> TTCAGAAAATCCCGCCCAAACTCCAAAATGATGCAAGACAATAGAAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- TTCAGAAAATCCCGCCCACACTCCAAAATGATGCAAGACAATAGAAGCTG
EY941479       <-- TTCAGAAAATCCCGCCCAAACTCCAAAATGATGCAAGACAATAGAAGCTG
FD557206       <-- TTCAGAAAATCCCGCCCAAACTCCAAAATGATGCAAGACAATAGAAGCTG
FD957808       <-- TTCAGAAAATCCCGCCCAAACTCCAAAATGATGCAAGACAATAGAAGCTG
EY898770       <-- TTCAGAAAATCCCGCCCAAACTCCAAAATGATGCAAGACAATAGAAGCTG
FD951451       --> TTCAGAAAATCCCGCCCAAACTCCAAAATGATGCAAGACAATAGAAGCTG
EY937054       --> TT................................................
FD553362       --> TTCAGAAAATCCCGCCCAAACTCCAAAATGATGCAAGACAATAGAAGCTG
FD953441       --> TTCAGAAAATCCCGCCCAAACTCCAAAATGATGCAAGACAATAGAA....
EW719583       --> TTCAGAAAATCCCGCCCACACTCCAAAATGATGCAAGACAATAGAAGCTG

               601    -    651
UN03578        --> CAACAGTAACATTGAGAGAGGCAGTGCCACAGCCATACTGAGGAATGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- CAACAGTGACATTGAGAGAGGCAGTGCCACAGCCATACTGAGGAATGTAA
EY941479       <-- CAACAGTAACATTGAGAGAGGCAGTGCCACAGCCATACTGAGGAATGTAA
FD557206       <-- CAACAGTAACATTGAGAGAGGCAGTGCCACAGCCATACTGAGGAATGTAA
FD957808       <-- CAACAGTAACATTGAGAGAGGCAGTGCCACAGCCATACTGAGGAATGTAA
EY898770       <-- CAACAGTAACATTGAGAGAGGCAGTGCCACAGCCATACTGAGGAATGTAA
FD951451       --> CAACAGTAACATTGAGAGAGGCAGTGCCACAGCCATACTGAGGAATGTAA
EY937054       --> ..................................................
FD553362       --> CAACAGTAACATTGAGAGAGGCAGTGCCACAGCCATACTGAGGAATGTAA
FD953441       --> ..................................................
EW719583       --> CAACAGTGACATTGAGAGAGGCAGTGCCACAGCCATACTGAGGAATGTAA

               651    -    701
UN03578        --> ACAAAGAAGTCACATATCTCATACTCTTTGGCAGATAACCCTGATCCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- ACAAAGAAGTCACATATCTCATACTCTTTGGCAGATAACCCCGATCCCTC
EY941479       <-- ACAAAGAAGTCACATATCTCATACTCTTTGGCAGATAACCCTGATCCCTC
FD557206       <-- ACAAAGAAGTCACATATCTCATACTCTTTGGCAGATAACCCTGATCCCTC
FD957808       <-- ACAAAGAAGTCACATATCTCATACTCTTTGGCAGATAACCCTGATCCCTC
EY898770       <-- ACAAAGAAGTCACATATCTCATACTCTTTGGCAGATAACCCTGATCCCTC
FD951451       --> ACAAAGAAGTCACATATCTCATACTCTTTGGCAGATAACCCTGATCCCTC
EY937054       --> ..................................................
FD553362       --> ACAAAGAAGTCACATATCTCATACTCTTTGGCAGATAACCCTGATCCCTC
FD953441       --> ..................................................
EW719583       --> ACAAAGAAGTCACATATCTCATACTCTTTGGCAGATAACCCCGATTCCTC

               701    -    751
UN03578        --> ATTACCCAGAAGAAAAGCAGTGTTTCTTTTGAAAGGATGTTCATTGACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- ATTACCCAGAAGAAAAGCAGTGTTTCTTTTGAAAGGATGTTCATTGACCT
EY941479       <-- ATTACCCAGAAGAAAAGCAGTGTTTCTTTTGAAAGGATGTTCATTGACCT
FD557206       <-- ATTACCCAGAAGAAAAGCAGTGTTTCTTTTGAAAGGATGTTCATTGACCT
FD957808       <-- ATTACCCAGAAGAAAAGCAGTGTTTCTTTTGAAAGGATGTTCATTGACCT
EY898770       <-- ATTACCCAGAAGAAAAGCAGTGTTTCTTTTGAAAGGATGTTCATTGACCT
FD951451       --> ATTACCCAGAAGAAAAGCAGT.............................
EY937054       --> ..................................................
FD553362       --> ATTACCCAGAAGAAAAGCAGTGTTTCTTTTG...................
FD953441       --> ..................................................
EW719583       --> ATTACCCAGAAGAAAAGCAGTGTTTCTTTTGAAAGGATGTTCATTGACCT

               751    -    801
UN03578        --> GAGCAGCTCCATCTGCGATCTCAACGCCGCATATATCGCATTCTTTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- GAGCAGCTCCATCTGCGATCTCAACGCCGCATATATCGCATTCTTTCTCC
EY941479       <-- GAGCAGCTCCATCTGCGATCTCAACGCCGCATATATCGCATTCTTTCTCC
FD557206       <-- GAGCAGCTCCATCTGCGATCTCAACGCCGCATATATCGCATTCTTTCTCC
FD957808       <-- GAGCAGCTCCATCTGCGATCTCAACGCCGCATATATCGCATTCTTTCTCC
EY898770       <-- GAGCAGCTCCATCTGCGATCTCAACGCCGCATATATCGCATTCTTTCTCC
FD951451       --> ..................................................
EY937054       --> ..................................................
FD553362       --> ..................................................
FD953441       --> ..................................................
EW719583       --> GAGCAGCTCCATCTGCGATCTCAACGCCGCATATATCGCATTCTTTCTCC

               801    -    851
UN03578        --> TCCTTGAGGTAGTCGCGAGCTTCGATTAAAGAGTGAAAGTGTCGGAAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- TCCTTGAGGTAGTCGCGAGCTTCGATTAAAGAGTGAAAGCGTCGGAAACG
EY941479       <-- TCCTTGAGGTAGTCGCGAGCTTCGATTAAAGAGTGAAAGTGTCGGAAACG
FD557206       <-- TCCTTGAGGTAGTCGCGAGCTTCGATTAAAGAGTGAAAGTGTCGGAAACG
FD957808       <-- TCCTTGAGGTAGTCGCGAGCTTCGATTAAAGAGTGAAAGTGTCGGAAACG
EY898770       <-- TCCTTGAGGTAGTCGCGAGCTTCGATTAAAGAGTGAAAGTGTCGGAAACG
FD951451       --> ..................................................
EY937054       --> ..................................................
FD553362       --> ..................................................
FD953441       --> ..................................................
EW719583       --> TCCTTGAGGTAGTCGCGAGCTTCGATTAAAGAGTGAAAGCGTCGGAAACG

               851    -    901
UN03578        --> GACGTGAGAAGCGGAACCATGGCTTCCGAA-GGCGTTGAAGTCACGGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- GACGTGAGAAGCGGAACCATGGCTTCCGAA-GGCGTTGAAGTCACGGCGG
EY941479       <-- GACGTGAGAAGCGGAACCATGGCTTCCGAA-GGCGTTGAAGTCACGGCGG
FD557206       <-- GACGTGAGAAGCGGAACCATGGCTTCCGAA-GGTGTTGAAGTCACGGCGG
FD957808       <-- GACGTGAGAAGCGGAACCATGGCTTCCGAA-GGCGTTGAAGTCACGGCGG
EY898770       <-- GACGTGAGAAGCGGAACCATGGCTTCCGAA-GGCGTTGAAGTCACGGCGG
FD951451       --> ..................................................
EY937054       --> ..................................................
FD553362       --> ..................................................
FD953441       --> ..................................................
EW719583       --> GACGTGAGAAGCGGAACCATGGCTTCCGAAAGGCGTTGAAGTCACGGCGG

               901    -    951
UN03578        --> CCC-ACGAGTATCAGCTCCGTCACGCCGAACGCCGTCGCGCTTCGAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- CCC-ACGAGTATCAGCTCCGTCACGCCGAACGCCGTGGCGCTTCGAGCTA
EY941479       <-- CCC-ACGAGTATCAGCTCCGTTACGCCAAACGCCGTCGCGCTTCGAGCTA
FD557206       <-- CCC-ACGAGTATCAGCTCCGTCACGCCGAACGCCGTCGCGCTTCGAGCTA
FD957808       <-- CCC-ACGAGTATCAGCTCCGTTACGCCGAACGCCGTCGCGCTTCGAGCTA
EY898770       <-- CCA-ACGAGTATCAGCTCCGTCACGCCGAACGCCGTCGCGCTTCGAGCTA
FD951451       --> ..................................................
EY937054       --> ..................................................
FD553362       --> ..................................................
FD953441       --> ..................................................
EW719583       --> CCCCACGAGTATCAGCTCCGTCACGCCGAACGCCGTGGCGCTTCGAGCTA

               951    -   1001
UN03578        --> GTGTTCCC-ACGTTGTGTCGCTTCGCTATGTTGTGAACAACCACGTAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- GTGTTCCC-ACGTTGTGTCACTTCGCTATGTTGTGAACAACCACGTAGCT
EY941479       <-- GTGTTCCC-ACGTTGTGTCGTTTCGCTATGTTGTGAACAACCACGCAGCT
FD557206       <-- GTGTTCCC-ACGTTGTGTCGCTTCGCTATGTTGTGAACAACCACGTAGCT
FD957808       <-- GTGTTCCC-ACGTTGTGTCGCTTCGCTATGTTGTGAACAACCACGTAGCT
EY898770       <-- GTGTTCCC-ACGTTGTGTCGCTTCGCTATGTTGTGAACAACCACGTAGCT
FD951451       --> ..................................................
EY937054       --> ..................................................
FD553362       --> ..................................................
FD953441       --> ..................................................
EW719583       --> GTGTTCCCCACGTTGTGTCACTTCGCTATGTTGTGAACAACCACGTAGCT

               1001   -   1051
UN03578        --> CTCATACTCCACCATCCCTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715939       <-- CTCATACTCCACCATCCCTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTC
EY941479       <-- CTCATACTCCACCATCCCTCTTCCTCTTCTTCTTCCTCTTCTTCTcc...
FD557206       <-- CTCATACTCCACCATCCCT...............................
FD957808       <-- CTCGTATCCCACCATCCCTCTTCCc.........................
EY898770       <-- CTCATACTCCACCATCCCTCTTCCTCTTCTTCTTCTTCTTC.........
FD951451       --> ..................................................
EY937054       --> ..................................................
FD553362       --> ..................................................
FD953441       --> ..................................................
EW719583       --> CTCATACTCCACCATCCCTCTTCtct........................

               1051   -   1101
UN03578        --> TTCTTCCC
                   ~~~~~~~~
EW715939       <-- TTCTTCCC
EY941479       <-- ........
FD557206       <-- ........
FD957808       <-- ........
EY898770       <-- ........
FD951451       --> ........
EY937054       --> ........
FD553362       --> ........
FD953441       --> ........
EW719583       --> ........