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Alignment for radish unigene UN03939

               1      -     51
UN03939        --> ATAAATTAATTTAAAATTAAAAACAAATAACAATCAATAACCCCTCAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- ..................................................
FD979494       <-- ..................................................
EX897305       <-- ..................................................
EW722356       <-- ..................................................
EW722357       <-- ..................................................
EW723052       <-- ..................................................
FD962075       <-- ..................................................
EX764594       <-- ..................................................
FD528626       --> ATAAATTAATTTAAAATTAAAAACAAATAACAATCAATAACCCCTCAATT
FD975522       --> ..................................................
EX768481       --> ..................................................
EX901090       --> ..................................................
FD958698       --> ..................................................
EW727927       --> ..................................................

               51     -    101
UN03939        --> ATTTTACATTTGCTTTATAAATATTTATATCCGTGCATGTGTACGGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- ..................................................
FD979494       <-- ..................................................
EX897305       <-- ..................................................
EW722356       <-- ..................................................
EW722357       <-- ..................................................
EW723052       <-- ..................................................
FD962075       <-- ..................................................
EX764594       <-- ..................................................
FD528626       --> ATTTTACATTTGCTTTATAAATATTTATATCCGTGCATGTGTACGGAAAA
FD975522       --> ..................................................
EX768481       --> ..................................................
EX901090       --> ..................................................
FD958698       --> ..................................................
EW727927       --> ..................................................

               101    -    151
UN03939        --> ATCAC-TAGTAAAACAATAAAA-CGGCGCCGTAAGCGGTTCAACTAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- ATCAC-TAGTAAAACAATAAAA-CGGCGCCGTAAGCGGTTCAACTAAATA
FD979494       <-- .............................................AAATA
EX897305       <-- ..................................................
EW722356       <-- ..................................................
EW722357       <-- ..................................................
EW723052       <-- ..................................................
FD962075       <-- ..................................................
EX764594       <-- ..................................................
FD528626       --> ATCACCTAGTAAAACAATAAAAACGGCGCCGTAAGCGGTTCAACTAAATA
FD975522       --> .............................................AAATA
EX768481       --> ..................................................
EX901090       --> ..................................................
FD958698       --> ..................................................
EW727927       --> ..................................................

               151    -    201
UN03939        --> AACCGGACACGTTTTATTTCA-TTTTTTTT-CTCTTATTGAATGAAATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- AACGGGACACATTTTATTTCA-ATTTTTTT-CTCTTATTGAATGAAATTC
FD979494       <-- AAC-GGACACGTTTTATTTCA-TTTTTTTT-CTCTTATTGAATGAAATTC
EX897305       <-- .............................T-CTCTTATTGAATGAAATTC
EW722356       <-- ...............................CTCTTATTGAATGAAATTC
EW722357       <-- ...............................CTCTTATTGAATGAAATTC
EW723052       <-- ...............................CTCTTATTGAATGAAATTC
FD962075       <-- ..................................................
EX764594       <-- ..................................................
FD528626       --> AACCGGACACATTTTATTTCAATTTTTTTT-CTCTTATTGAATGAAATTC
FD975522       --> AACCGGACACGTTTTATTTCA-TTTTTTTTTCTCTTATTGAATGAAATTC
EX768481       --> ...............................CTCTTATTGAATGAAATTC
EX901090       --> ...............................CTCTTATTGAATGAAATTC
FD958698       --> ...............................CTCTTATTGAATGAAATTC
EW727927       --> .................................CTTATTGAATGAAATTC

               201    -    251
UN03939        --> AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
FD979494       <-- AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
EX897305       <-- AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
EW722356       <-- AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
EW722357       <-- AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
EW723052       <-- AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
FD962075       <-- ...........TTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
EX764594       <-- .............GCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
FD528626       --> AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
FD975522       --> AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
EX768481       --> AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
EX901090       --> AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
FD958698       --> AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA
EW727927       --> AACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAA

               251    -    301
UN03939        --> TAGTATGATGCGCCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- TAGTATGATGCGCCACCTATAGTTGCGAACTTAAGCTCTTCTGGTCCTTC  Raphanus raphanistrum subsp. maritimus
FD979494       <-- TAGTATGATGCGCCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX897305       <-- TAGTATGATGCGCCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTC  Raphanus sativus cv Early Scarlet Globe
EW722356       <-- TAGTATGATGCGCCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTC  Raphanus sativus cv Early Scarlet Globe
EW722357       <-- TAGTATGATGCGCCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTC  Raphanus sativus cv Early Scarlet Globe
EW723052       <-- TAGTATGATGCGCCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTC  Raphanus sativus cv Early Scarlet Globe
FD962075       <-- TAGTATGATGCGCCACCTATAGTTGCGAACTTAAGCTCTTCTGGTCCTTC  Raphanus raphanistrum subsp. maritimus
EX764594       <-- TAGTATGATGCGCCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD528626       --> TAGTATGATGCGCCACCTATAGTTGCGAACTTAAGCTCTTCTGGTCCTTC  Raphanus raphanistrum subsp. maritimus
FD975522       --> TAGTATGATGCGCCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768481       --> TAGTATGATGCGCCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX901090       --> TAGTATGATGCGCCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTC  Raphanus sativus cv Early Scarlet Globe
FD958698       --> TAGTATGATGCGCCACCTATAGTTGCGAACTTAAGCTCTTCTGGTCCTTC  Raphanus raphanistrum subsp. maritimus
EW727927       --> TAGTATGATGCGCCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTC  Raphanus sativus cv Early Scarlet Globe

               301    -    351
UN03939        --> GACCTCTAGAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- AATCTCTAGAAAATCTCCTTTGTTTGCTCTGTTAAAACCTCCGGTTAACC  Raphanus raphanistrum subsp. maritimus
FD979494       <-- GACCTCTAGAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX897305       <-- GACCTCTAGAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAACC  Raphanus sativus cv Early Scarlet Globe
EW722356       <-- GACCTCTAGAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAACC  Raphanus sativus cv Early Scarlet Globe
EW722357       <-- GACCTCTAGAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAACC  Raphanus sativus cv Early Scarlet Globe
EW723052       <-- GACCTCTAGAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAACC  Raphanus sativus cv Early Scarlet Globe
FD962075       <-- AATCTCTAGAAAATCTCCTTTGTTTGCTCTGTTAAAACCTCCGGTTAACC  Raphanus raphanistrum subsp. maritimus
EX764594       <-- GACCTCTAGAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD528626       --> AATCTCTAGAAAATCTCCTTTGTTTGCTCTGTTAAAACCTCCGGTTAACC  Raphanus raphanistrum subsp. maritimus
FD975522       --> GACCTCTAAAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768481       --> GACCTCTAGAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX901090       --> GACCTCTAGAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAACC  Raphanus sativus cv Early Scarlet Globe
FD958698       --> AATCTCTAGAAAATCTCCTTTGTTTGCTCTGTTAAAACCTCCGGTTAACC  Raphanus raphanistrum subsp. maritimus
EW727927       --> GACCTCTAGAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAACC  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN03939        --> ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAGATATCGCCATCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAGATATCGCCATCAAT
FD979494       <-- ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAGATATCGCCATCAAT
EX897305       <-- ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAGATATCGCCATCAAT
EW722356       <-- ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAGATATCGCCATCAAT
EW722357       <-- ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAGATATCGCCATCAAT
EW723052       <-- ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAGATATCGCCATCAAT
FD962075       <-- ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAGATATCGCCATCAAT
EX764594       <-- ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAGATATCGCCATCAAT
FD528626       --> ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAAATATCGCCATCAAT
FD975522       --> ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAAATATCGCCATCAAT
EX768481       --> ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAGATATCGCCATCAAT
EX901090       --> ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAAATATCGCCATCAAT
FD958698       --> ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAAATATCGCCATCAAT
EW727927       --> ATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAAATATCGCCATCAAT

               401    -    451
UN03939        --> GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
FD979494       <-- GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
EX897305       <-- GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
EW722356       <-- GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
EW722357       <-- GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
EW723052       <-- GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
FD962075       <-- GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
EX764594       <-- GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
FD528626       --> GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
FD975522       --> GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
EX768481       --> GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
EX901090       --> GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
FD958698       --> GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG
EW727927       --> GACCTGAGTCCTTCACCGCACGCGACAAGCACTTTACTCTTCTTGTCCGG

               451    -    501
UN03939        --> GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
FD979494       <-- GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
EX897305       <-- GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
EW722356       <-- GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
EW722357       <-- GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
EW723052       <-- GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
FD962075       <-- GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
EX764594       <-- GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
FD528626       --> GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
FD975522       --> GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
EX768481       --> GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
EX901090       --> GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
FD958698       --> GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC
EW727927       --> GAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATC

               501    -    551
UN03939        --> TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
FD979494       <-- TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
EX897305       <-- TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGACCCACTTCTTCAGC
EW722356       <-- TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
EW722357       <-- TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
EW723052       <-- TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
FD962075       <-- TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
EX764594       <-- TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
FD528626       --> TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
FD975522       --> TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
EX768481       --> TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
EX901090       --> TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGACCCACTTCTTCAGC
FD958698       --> TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC
EW727927       --> TCTGGCCCGTCCAAAGCCCAATATATCCCAAATGGATCCACTTCTTCAGC

               551    -    601
UN03939        --> AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
FD979494       <-- AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
EX897305       <-- AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
EW722356       <-- AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
EW722357       <-- AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
EW723052       <-- AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
FD962075       <-- AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
EX764594       <-- AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
FD528626       --> AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
FD975522       --> AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
EX768481       --> AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
EX901090       --> AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
FD958698       --> AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG
EW727927       --> AGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAG

               601    -    651
UN03939        --> TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTA
FD979494       <-- TGATCCTTTCACATGTGCCTTTTCTCCTTCCCAAGCTGGCCGCACGTCTA
EX897305       <-- TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTA
EW722356       <-- TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTA
EW722357       <-- TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTA
EW723052       <-- TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTA
FD962075       <-- TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTA
EX764594       <-- TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGCCTA
FD528626       --> TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTA
FD975522       --> TGATCCTTTCACATGTGCCTTTTCTCCTTCCCAAGCTGGCCGCACGTCTA
EX768481       --> TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGCCTA
EX901090       --> TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTA
FD958698       --> TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTA
EW727927       --> TGATCCTTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTA

               651    -    701
UN03939        --> ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- ACAACACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
FD979494       <-- ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
EX897305       <-- ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
EW722356       <-- ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
EW722357       <-- ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
EW723052       <-- ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
FD962075       <-- ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
EX764594       <-- ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
FD528626       --> ACAACACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
FD975522       --> ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
EX768481       --> ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
EX901090       --> ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
FD958698       --> ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC
EW727927       --> ACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTCTCGGCTCC

               701    -    751
UN03939        --> ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
FD979494       <-- ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
EX897305       <-- ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
EW722356       <-- ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
EW722357       <-- ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
EW723052       <-- ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGG.
FD962075       <-- ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
EX764594       <-- ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
FD528626       --> ACCGTCCGGAC.......................................
FD975522       --> ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
EX768481       --> ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
EX901090       --> ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
FD958698       --> ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA
EW727927       --> ACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGA

               751    -    801
UN03939        --> GATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGTACTAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- GATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGTACTAGTG
FD979494       <-- GATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGTACTAGTG
EX897305       <-- GATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGTACTAGTG
EW722356       <-- GATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGTACTAGTG
EW722357       <-- GATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGTACTAGTG
EW723052       <-- ..................................................
FD962075       <-- GATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGTACTAGTG
EX764594       <-- GATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGTACTAGTG
FD528626       --> ..................................................
FD975522       --> GATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGTACTAGTG
EX768481       --> GATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGTACTAGTG
EX901090       --> ..................................................
FD958698       --> GATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGTACTAGTG
EW727927       --> AATCACTGGTAATCTGTACGGTTTTCTGAGGCGTTGGTTTGGCACTAGTG

               801    -    851
UN03939        --> GTGGCTTGTGGATACGGTTTGGTTGAGGAAGAAGAAGTGTCGTCATCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532055       <-- GTGGCTTGTGGATACGGTTTGGTTGAGGAAGAAGAAGTGTCGTCATCTCT  Raphanus raphanistrum subsp. maritimus
FD979494       <-- GTGGCTTGTGGATACGGTTTGGTTGAGGAAGAAGAAGTGTCGTCATCTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX897305       <-- GTGGCTTGTGGATACGGTTTGGTTGAGGAAGAAGAAGTGTCGTCtc....  Raphanus sativus cv Early Scarlet Globe
EW722356       <-- GTGGCTTGTGGATACGGTTTGGTTGAGGAAGAAGAAGTGTCGTCATCTCT  Raphanus sativus cv Early Scarlet Globe
EW722357       <-- GTGGCTTGTGGATACGGTTTGGTTGAGGAAGAAGAAGTGTCGTCATCTCT  Raphanus sativus cv Early Scarlet Globe
EW723052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD962075       <-- GTGGCTTGTGGATACGGTTTGGTTGAGGAAGAAGAAGTGTCGTCATCTCT  Raphanus raphanistrum subsp. maritimus
EX764594       <-- GTGGCTTGTGGATACGGTTTGGTTGAGGAAGAAGAAGTGTCGTCATCTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD528626       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD975522       --> GTGGCTTGTGGATACGGTTTG.............................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768481       --> GTGGCTTGTGGATACGGTTTGGTTGAGGAAGAAGAAGTG...........  Raphanus raphanistrum subsp. raphanistrum (NY)
EX901090       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD958698       --> GTGGCTTGTGGATACGGTTTGGTTGAGGAAGAAGAAGTGTCGTCATCTCT  Raphanus raphanistrum subsp. maritimus
EW727927       --> GTGGCTTGTGGATACGGTTTGGTTGAGGAAAAAAAAGTGTCGTCATCTCT  Raphanus sativus cv Early Scarlet Globe

               851    -    901
UN03939        --> CCCTTTTTGTATCC...
                   ~~~~~~~~~~~~~~~~~
FD532055       <-- CC...............  Raphanus raphanistrum subsp. maritimus
FD979494       <-- CC...............  Raphanus raphanistrum subsp. raphanistrum (NY)
EX897305       <-- .................  Raphanus sativus cv Early Scarlet Globe
EW722356       <-- AACTTTTTGTATCC...  Raphanus sativus cv Early Scarlet Globe
EW722357       <-- AACTTTTTGTATCC...  Raphanus sativus cv Early Scarlet Globe
EW723052       <-- .................  Raphanus sativus cv Early Scarlet Globe
FD962075       <-- CC...............  Raphanus raphanistrum subsp. maritimus
EX764594       <-- CCCc.............  Raphanus raphanistrum subsp. raphanistrum (NY)
FD528626       --> .................  Raphanus raphanistrum subsp. maritimus
FD975522       --> .................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768481       --> .................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX901090       --> .................  Raphanus sativus cv Early Scarlet Globe
FD958698       --> CC...............  Raphanus raphanistrum subsp. maritimus
EW727927       --> AACTTTTTGTATtttcc  Raphanus sativus cv Early Scarlet Globe