1      -     51
UN03953        --> GGAACTCTCTCTGCCTTGGATTCGTGAGAAGCAAAGAAAGAGAGAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- .......................................GAGAGAGAGAG
FD553727       <-- ..................................................
FD538110       <-- ..................................................
FD969368       <-- ..................................................
EY900982       --> GGAACTCTCTCTGCCTTGGATTCGTGAGAAGCAAAGAAAGAGAGAGAGAG
FD535209       --> GGAACTCTCTCTGCCTTGGATTCGTGAGAAGCAAGGAAAGAGAGAGAGAG
EY924225       --> ..........ggGCCTTGGATTCGTGAGAAGCAAAGAAAGAGAGAGAGAG
FD557669       --> ..................................................
FD541929       --> .........................................ggggattcg
FD973730       --> .............................................attcg

               51     -    101
UN03953        --> AGAGAGAGAGAGAGAGAGAGAGAG----CTTCAATGGAGTTAGCTTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- AGAGAGAGAGAGAGAGAGAGAGAG----CTTCAATGGAGTTAGCTTCCGT
FD553727       <-- .GAGAGAGAGAGAGAGAGAGAGAG----CTTCAATGGAGTTAGCTTCCTT
FD538110       <-- ..................................................
FD969368       <-- ..................................................
EY900982       --> AGAGAGAGAGAGAGAGAGAGAGAG----CTTCAATGGAGTTAGCTTCCTT
FD535209       --> AGAGAGAGAGAGAGAGAGAG--------CTTCAATGGAGTTAGCTTCCTT
EY924225       --> AGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTCAATGGAGTTAGCTTCCTT
FD557669       --> .GAGAGAGAGAGAGAGAGAGAGAG----CTTCAATGGAGTTAGCTTCCTT
FD541929       --> tgagaagcaaAGAAAGAGAGAGAG----CTTCAATGGAGTTAGCTTCCTT
FD973730       --> tgagaagcaaAGAAAGAGAGAGAG----CTTCAATGGAGTTAGCTTCCTT

               101    -    151
UN03953        --> TGTCGGTAGAGCTCTGTTCGTTTCCGTATTCCTTCTCTCCGCATGGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- TGTCGGTAGAGCTCTGTTCGTTTCCGTATTCCTTCTCTCCGCATGGCAAG
FD553727       <-- TGTCGGTAGAGCTCTGTTCGTTTCCGTATTCCTTCTCTCCGCATGGCAAG
FD538110       <-- ......................................CCGCATGGCAAG
FD969368       <-- ..................................................
EY900982       --> TGTCGGTAGAGCTCTGTTCGTTTCCGTATTCCTTCTCTCCGCATGGCAAG
FD535209       --> TGTCGGTAGAGCTCTGTT---TTCCGTATTCCTTCTCTCCGCATGGCAAG
EY924225       --> TGTCGGTAGAGCTCTGTTCGTTTCCGTATTCCTTCTCTCCGCATGGCAAG
FD557669       --> TGTCGGTAGAGCTCTGTTCGTTTCCGTATTCCTTCTCTCCGCATGGCAAG
FD541929       --> TGTCGGTAGAGCTCTGTTCGTTTCCGTATTCCTTCTCTCCGCATGGCAAG
FD973730       --> TGTCGGTAGAGCTCTGTTCGTTTCCGTATTCCTTCTCTCCGCATGGCAAG

               151    -    201
UN03953        --> AGTTCAATGGGTTTGGGGATGATGGGGGTCGAGCAGCTAAATCCTTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- AGTTCAATGGGTTTGGGGATGATGGGGGTCGAGCAGCTAAATCCTTAAGA
FD553727       <-- AGTTCAATGGGTTTGGGGATGATGGGGGTCGAGCAGCTAAATCCTTAAGA
FD538110       <-- AGTTCAATGGGTTTGGGGATGATGGGGGTCGAGCAGCTAAATCTTTAAGA
FD969368       <-- ..................................................
EY900982       --> AGTTCAATGGGTTTGGGGATGATGGGGGTCGAGCAGCTACATCCTTAAGA
FD535209       --> AGTTCAATGGGTTTGGGGATGATGGGGGTCGAGCAGCTAAATCCTTAAGA
EY924225       --> AGTTCAATGGGTTTGGGGATGATGGGGGTCGAGCAGCTAAATCCTTAAGA
FD557669       --> AGTTCAATGGGTTTGGGGATGATGGGGGTCGAGCAGCTAAATCCTTAAGA
FD541929       --> AGTTCAATGGGTTTGGGGATGATGGGGGTCGAGCAGCTAAATCTTTAAGA
FD973730       --> AGTTCAATGGGTTTGGGGATGATGGGGGTCGAGCAGCTAAATCTTTAAGA

               201    -    251
UN03953        --> CCAAAGTACAATGCTTTTGTTAGCCACGTGACAACTCATACCGGCCAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- CCAAAGTACAATGCTTTTGTTAGCCACGTGACAACTCATACCGGCCAGCA
FD553727       <-- CCAAAGTACAATGCTTTTGTTAGCCACGTGACAACTCATACCGGCCAGCA
FD538110       <-- CCAAAGTACAATGCTTTTGTTAGCCACGTGACAACTCATACCGGCCAGCA
FD969368       <-- ..................................................
EY900982       --> CCAAAGTACAATGCTTTTGTTAGCCACGTGACAACTCATACCGGCCAGCA
FD535209       --> CCAAAGTACAATGCTTTTGTTAGCCACGTGACAACTCATACCGGCCAGCA
EY924225       --> CCAAAGTACAATGCTTTTGTTAGCCGCGTGACAACTCATACCGGCCAGCA
FD557669       --> CCAAAGTACAATGCTTTTGTTAGCCACGTGACAACTCATACCGGCCAGCA
FD541929       --> CCAAAGTACAATGCTTTTGTTAGCCACGTGACAACTCATACCGGCCAGCA
FD973730       --> CCAAAGTACAATGCTTTTGTTAGCCACGTGACAACTCATACCGGCCAGCA

               251    -    301
UN03953        --> ATTGCCACCGGTTGATATGAAGATTCTTGTTGCTGCTGCTGTAGCCTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- ATTGCCACCGGTTGATATGAAGATTCTTGTTGCTGCTGCTGTAGCCTTGA
FD553727       <-- ATTGCCACCGGTTGATATGAAGATTCTTGTTGCTGCTGCTGTAGCCTTGA
FD538110       <-- ATTGCCACCAGTTGATATGAAGATTCTTATTGCTGCTGCAATCGCCTTGA
FD969368       <-- .....................................gcaatcGCCTTGA
EY900982       --> ATTGCCACCGGTTGATATGAAGATTCTTGTTGCTGCTGCTGTAGCCTTGA
FD535209       --> ATTGCCACCGGTTGATATGAAGATTCTTGTTGCTGCTGCTGTAGCCTTGA
EY924225       --> ATTGCCACCGGTTGATATGAAGATTCTTGTTGCTGCTGCTGTAGCCTTGA
FD557669       --> ATTGCCACCGGTTGATATGAAGATTCTTGTTGCTGCTGCTGTAGCCTTGA
FD541929       --> ATTGCCACCAGTTGATATGAAGATTCTTATTGCTGCTGCAATCGCCTTGA
FD973730       --> ATTACCACCAGTTGATATGAAGATTCTTATTGCTGCTGCAATCGCCTTGA

               301    -    351
UN03953        --> AGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- AGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTTAT
FD553727       <-- AGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTTAT
FD538110       <-- AGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTTAT
FD969368       <-- AGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTTAT
EY900982       --> AGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTTAT
FD535209       --> AGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTTAT
EY924225       --> AGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTTAT
FD557669       --> AGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTTAT
FD541929       --> AGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTTAT
FD973730       --> AGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTTAT

               351    -    401
UN03953        --> CTCTTGCTTCTGCATCAAGCCGTTGCCACCCCGATTCTGTATGATTTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- CTCTTGCTTCTGCATCAAGCCGTTGCCACCCCGATTCTGTATGATTTCTA
FD553727       <-- CTCTTGCTTTTGCATCAAGCCGTTGCCACCCCGATTCTGTATGATTTCTA
FD538110       <-- CTCTTGCTTCTGCATCAAGCCGTTGCCACCCCGATTCTGTATGATTTCTA
FD969368       <-- CTCTTGCTTCTGCATCAATCCGTTGCCACCCCGATTCTGTATGATTTCTA
EY900982       --> CTCTTGCTTCTGCATCAAGCCGTTGCCACCCCGATTCTGTATGATTTCTA
FD535209       --> CTCTTGCTTCTGCATCAAGCCGTTGCCACCCCGATTCTGTATGATTTCTA
EY924225       --> CTCTTGCTTCTGCATCAAGCCGTTGCCACCCCGATTCTGTATGATTTCTA
FD557669       --> CTCTTGCTTCTGCATCAAGCCGTTGCCACCCCGATTCTGTATGATTTCTA
FD541929       --> CTCTTGCTTCTGCATCAAGCCGTTGCCACCCCGATTCTGTATGATTTCTA
FD973730       --> CTCTTGCTTCTGCATCAATCCGTTGCCACCCCGATTCTGTATGATTTCTA

               401    -    451
UN03953        --> CAACTACGATGTTGACAAAAAGGAATTCAGCCAACTGTTTTCCAAGTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- CAACTACGATGTTGACAAAAAGGAATTCAGCCAACTGTTTTCCAAGTTTA  Raphanus raphanistrum subsp. landra
FD553727       <-- CAACTACGATGTTGACAAAAAGGAATTCAGCCAACTGTTTTCCAAGTTTA  Raphanus raphanistrum subsp. landra
FD538110       <-- CAACTACGATGTTGACAAAAAGGAATTCAGCCAGCTGTTTTCCAAGTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969368       <-- CAACTACGATGTTGACAAAAAGGAATTCAGCCAGCTGTTTTCCAAGTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY900982       --> CAACTACGATGTTGACAAAAAGGAATTCAGCCAACTGTTTTCCAAGTTTA  Raphanus raphanistrum subsp. maritimus
FD535209       --> CAACTACGATGTTGACAAAAAGGAATTCAGCCAACTGTTTTCCAAGTTTA  Raphanus raphanistrum subsp. maritimus
EY924225       --> CAACTACGATGTTGACAAAAAGGAATTCAGCCAACTGTTTTCCAAGTTTA  Raphanus raphanistrum subsp. landra
FD557669       --> CAACTACGATGTTGACAAAAAGGAATTCAGCCAACTGTTTTCCAAGTTTA  Raphanus raphanistrum subsp. landra
FD541929       --> CAACTACGATGTTGACAAAAAGGAATTCAGCCAGCTGTTTTCCAAGTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973730       --> CAACTACGATGTTGACAAAAAGGAATTCAGCCAGCTGTTTTCCAAGTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN03953        --> CTCAGAGCTTGGCACTCCTTGGGGCACTACTCTTCTTCATTGGAATGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- CTCAGAGCTTGGCACTCCTTGGGGCACTACTCTTCTTCATTGGAATGAAG  Raphanus raphanistrum subsp. landra
FD553727       <-- CTCAGAGCTTGGCACTCCTTGGGGCACTACTCTTCTTCATTGGAATGAAG  Raphanus raphanistrum subsp. landra
FD538110       <-- CTCAGAGTTTGGCACTTCTTGGGGCACTGCTCTTCTTCATTGGAATGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969368       <-- CTCAGAGTTTGGCACTTCTTGGGGCACTGCTCTTCTTCATTGGAATGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY900982       --> CTCAGAGCTTGGCACTCCTTGGGGCACTACTCTTCTTCATTGGAATGAAG  Raphanus raphanistrum subsp. maritimus
FD535209       --> CTCAGAGCTTGGCACTCCTTGGGGCACTACTCTTCTTCATTGGAATGAAG  Raphanus raphanistrum subsp. maritimus
EY924225       --> CT................................................  Raphanus raphanistrum subsp. landra
FD557669       --> CTCAGAGCTTGGCACTCCTTGGGGCACTACTCTTCTTCATTGGAATGAAG  Raphanus raphanistrum subsp. landra
FD541929       --> CTCAGAGTTTGGCACTTCTTGGGGCACTGCTCTTCTTCATTGGAATGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973730       --> CTCAGAGTTTGGCACTTCTTGGGGCACTGCTCTTCTTCATTGGAATGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN03953        --> AATTCGAGGAGACATGGTAGGCAACTCCGGAAGAAGGCTCCAAAAGCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- AATTCGAGGAGACATGGTAGGCAACTCCGGAAGAAGGCTCCAAAAGCTAA
FD553727       <-- AATTCGAGGAGACATGGTAGGCAACTCCGGAAGAAGGCTCCAAAAGCTAA
FD538110       <-- AATTCGAGGAGACATGGTAGGCAACTCCGGAAGAAGGCTCCAAAAGCTAA
FD969368       <-- AATTCGAGGAGACATGGTAGGCAACTCCGGAAGAAGGCTCCAAAAGCTAA
EY900982       --> AATTCGAGGAGACATGGTAGGCAACTCCGGAAGAAGGCTCCAAAAGCTAA
FD535209       --> AATTCGAGGAGACATGGTAGGCAACTCCGGAAGAAGGCTCCAAAAGCTAA
EY924225       --> ..................................................
FD557669       --> AATTCGAGGAGACATGGTAGGCAACTCCGGAAGAAGGCTCCAAAAGCTAA
FD541929       --> AATTCGAGGAGACATGGTAGGCAACTCCGGAAGAAGGCTCCAAAAGCTAA
FD973730       --> AATTCGAGGAGACATGGTAGGCAACTCCGGAAGAAGGCTCCAAAAGCTAA

               551    -    601
UN03953        --> AGCAAACTGATAAAAAATGATGTTTTCATCGGGTTGTTCAAGCTTTT-GT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- AGCAAACTGATAAAAAATGATGTTTTCATCGGGTTGTTCAAGCTTTT-GT  Raphanus raphanistrum subsp. landra
FD553727       <-- AGCAAACTGATAAAAAATGATGTTTTCATCGGGTTGTTCAAGCTTTT-GT  Raphanus raphanistrum subsp. landra
FD538110       <-- AGCAAACTGATAAAAAATGATGTTTTCATCGGGTTGTTCAAGCTTTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969368       <-- AGCAAACTGATAAAAAATGATGTTTTCATCGGGTTGTTCAAGCTTTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY900982       --> AGCAAACTGATAAAAAATGATGTTTTCATCGGGTTGTTCAAGCTTTT-GT  Raphanus raphanistrum subsp. maritimus
FD535209       --> AGCAAACTGATAAAAAATGATGTTTTCATCGGGTTGTTCAAGCTTTT-GT  Raphanus raphanistrum subsp. maritimus
EY924225       --> ..................................................  Raphanus raphanistrum subsp. landra
FD557669       --> AGCAAACTGATAAAAAATGATGTTTTCATCGGGTTGTTCAAGCTTTT-GT  Raphanus raphanistrum subsp. landra
FD541929       --> AGCAAACTGATAAAAAATGATGTTTTCATCGGGTTGTTCAAGCTTTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973730       --> AGCAAACTGATAAAAAATGATGTTTTCATCGGGTTGTTCAAGCTTTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN03953        --> CTGTATTTTTATTTTTTATTTTGGAAACCATGAGGAGAGGCAAAATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- CTGTATTTTTATTTTTTATTTTGGAAACCATGAGGAGAGGCAAAATCTTT  Raphanus raphanistrum subsp. landra
FD553727       <-- CTGTATTTTTATTTTTTATTTTGGAAACCGTGAGGAGAGGCAAAATCTTT  Raphanus raphanistrum subsp. landra
FD538110       <-- CTGTATTTTTATTTTTTATTTTGGAGACCATGAGGAGAGGCAAAATCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969368       <-- CTGTATTTTTATTTTTTATTTTGGAGACCATGAGGAGAGGCAAAATCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY900982       --> CTGTATTTTTATTTTTTATTTTGGAAACCATGAGGAGAGGCAAAATCTTT  Raphanus raphanistrum subsp. maritimus
FD535209       --> CTGTATTTTTATTTTTTATTTTGGAAACCATGAGGAGAGGCAAAATCTTT  Raphanus raphanistrum subsp. maritimus
EY924225       --> ..................................................  Raphanus raphanistrum subsp. landra
FD557669       --> CTGTATTTTTATTTTTTATTTTGGAAACCGTGAGGAGAGGCAAAATCTTT  Raphanus raphanistrum subsp. landra
FD541929       --> CTGTATTTTTATTTTTTATTTTGGAGACCATGAGGAGAGGCAAAATCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973730       --> CTGTATTTTTATTTTTTATTTTGGAGACCATGAGGAGAGGCAAAATCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN03953        --> GCTTATTTCCTTGATCTTATTGACAGTTTTTGTAGACACTTTTTGGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- GCTTATTTCCTTGATCTTATTGACAGTTTTTGTAGACACTTTTTGGTTCT
FD553727       <-- GCTTATTTCCTTGATCTTATTGACAGTTTTTGTAGACACTTTTTGGTTCT
FD538110       <-- GCTTATTTCCTTGAGCTTATTGACACTTTTTGTAGAGACTTTTTGGTTCT
FD969368       <-- GCTc..............................................
EY900982       --> GCTTATTTCCTTGATCTTATTGACAGTTTTTGTAGACACTTTTTGGTTCT
FD535209       --> GCTTATTTCCTTGATCTTATTGACAGTTTTTGTAGACACTTTTTGGTTCT
EY924225       --> ..................................................
FD557669       --> GCTTATTTCCTTGATCTTATTGACAGTTTTTGTAGACACTTTTTGGTTCT
FD541929       --> GCTTATTTCCTTGAGCTTATTGACACTTTTTGTAGAGACTTTTTGGTTCT
FD973730       --> GCTcaaaaa.........................................

               701    -    751
UN03953        --> CTAGAGAAAATACTATTTCAATTTCGGAT......
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774658       <-- CTAGAGAAAATACTATTTCAATTTCGG........
FD553727       <-- CTAGAGAAAATACTATTTCAATTTCGG........
FD538110       <-- CTAGAGAAAta........................
FD969368       <-- ...................................
EY900982       --> CTAGAGAAAATACTATTT.................
FD535209       --> CTAGAGAAAATACTATTTCAATTTCGGAT......
EY924225       --> ...................................
FD557669       --> CTAGAGAAA-TACTATTTCAATTTCGGAaaaaaaa
FD541929       --> CTAGAGAAAta........................
FD973730       --> ...................................