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Alignment for radish unigene UN04096

               1      -     51
UN04096        --> GTAAAACATATTCATTTATTTAACTTAATAGTTGATACAAACTTATTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ............CATTTATTTAACTTAATAGTTGATACAAACTTATTTTA
FD544233       <-- ..................................................
FD989935       <-- ..................................................
EX895861       <-- ..................................................
FD989666       <-- ..................................................
EX893030       --> GTAAAACATATTCATTTATTTAACTTAATAGTTGATACAAACTTATTTTA
FD985421       --> aTAAAACATATTCATTTATTTAACTTAATAGTTGATACAAACTTATTTTA
FD985653       --> aTAAAACATATTCATTTATTTAACTTAATAGTTGATACAAACTTATTTTA
FD539891       --> ..AAAACATATTCATTTATTTAACTTAATAGTTGATACAAACTTATTTTA
EY895943       --> ............CATTTATTTAACTTAATAGTTGATACAAACTTATTTTA
FD936837       --> .................................GATACAAACTTATTTTA

               51     -    101
UN04096        --> CATTCAAGATGAGAGAAAGAGAGAGAGAG----GTCACACAGGAGCGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- CATTCAAGATGAGAGAAAGAGAGAGAGAG----GTCACACAGGAGCGAGA  Raphanus raphanistrum subsp. maritimus
FD544233       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989935       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895861       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD989666       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX893030       --> CATTCAAGATGAGAGAAAGAGAGAGAGAGAGAGGTCACACAGGAGCGAGA  Raphanus sativus var. oleiformis
FD985421       --> CATTCAAGATGAGAGAAAGAGAGAGAGAG--AGGTCACACAGGAGCGAGA  Raphanus raphanistrum subsp. landra
FD985653       --> CATTCAAGATGAGAGAAAGAGAGAGAGAG--AGGTCACACAGGAGCGAGA  Raphanus raphanistrum subsp. landra
FD539891       --> CATTCAAGATGAGAGAAAGAGAGAGAGAG----GTCACACAGGGGCGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY895943       --> CATTCAAGATGAGAGAAAGAGAGAGAGAG----GTCACACAGGAGCGAGA  Raphanus raphanistrum subsp. maritimus
FD936837       --> CATTCAAGATGAGAGAAAGAGAGAGAGAG----GTCATACAGGAGCGAGA  Raphanus sativus var. oleiformis

               101    -    151
UN04096        --> GATTCAGATTAATTTAACACGCAAGCAACTAAAACACACAATTCGACAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- GATTCAGATTAATTTAACACGCAAGCAACTAAAACACACAATTCGACAGT
FD544233       <-- ..................................................
FD989935       <-- ..................................................
EX895861       <-- ..................................................
FD989666       <-- ..................................................
EX893030       --> GATTCAGATTAATTTAACACGCAAGCAACTAAAACACACAATTCGACAGT
FD985421       --> GATTCAGATTAATTTAACACGCAAGCAACTAAAACACACAATTCGACAGT
FD985653       --> GATTCAGATTAATTTAACACGCAAGCAACTAAAACACACAATTCGACAGT
FD539891       --> GATTCAAATTAATTTAACACGCAAGAAACTAAAACACACAATTCGACAGT
EY895943       --> GATTCAGATTAATTTAACACGCAAGCAACTAAAACACACAATTCGACAGT
FD936837       --> TATTCAGATTAATTTAACACGCAAGCAACTAAAACACACAATTCGACAGT

               151    -    201
UN04096        --> TGATAGTTAAGAGCTGATCAATTCTTGGATATAAGAAACATTTCTTTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- TGATAGTTAAGAGCTGATCAATTCTTGGATATAAGAAACATTTCTTTGCT
FD544233       <-- ..................................................
FD989935       <-- ..................................................
EX895861       <-- ..................................................
FD989666       <-- ..................................................
EX893030       --> TGATAGTTAAGAGCTGATCAATTCTTGGATATAAGAAACATTTCTTTGCT
FD985421       --> TGATAGTTAAGAGCTGATCAATTCTTGGATATAAGAAACATTTCTTTGCT
FD985653       --> TGATAGTTAAGAGCTGATCAATTCTTGGATATAAAAAACATTTCTTTGCT
FD539891       --> TGATAGTTAAGAGCTGATCAATTCTTGGATATAAAAAACATTTCTTTGCT
EY895943       --> TGATAGTTAAGAGCTGATCAATTCTTGGATATAAGAAACATTTCTTTGCT
FD936837       --> TGATAGTTAAGAGCTGATCAATTCTTGGATATAAGAAACATTTCTTTGCT

               201    -    251
UN04096        --> CTCCTTCATTTTCTCAATGTCTCCTTTGATCTTCTCATCAATGGTTATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- CTCCTTCATTTTCTCAATGTCTCCTTTGATCTTCTCATCAATGGTTAc..
FD544233       <-- ..................................................
FD989935       <-- ..................................................
EX895861       <-- ..................................................
FD989666       <-- ..................................................
EX893030       --> CTCCTTCATTTTCTCAATGTCTCCTTTGATCTTCTCATCAATGGTTATGG
FD985421       --> CTCCTTCATTTTCTCAATGTCTCCTTTGATCTTCTCATCAATGGTTATGG
FD985653       --> CTCCTTCATTTTCTCAATGTCTCCTTTGATCTTCTCATCAATGGTTATGG
FD539891       --> CTCCTTCATTTTCTCAATGTCTCCTTTGATCTTCTCATCAATGGTTATGG
EY895943       --> CTCCTTCATTTTCTCAATGTCTCCTTTGATCTTCTCATCAATGGTTAc..
FD936837       --> CTCCTTCATTTTCTCAATGTCTCCTTTGATCTTCTCATCAATGGTTATGG

               251    -    301
UN04096        --> TGTCTTCCATGTCGGCACTGTCCTGTGGCACCAAAGTTCTCATTTGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- ..................................................
FD989935       <-- ..................................................
EX895861       <-- ..................................................
FD989666       <-- ..................................................
EX893030       --> TGTCTTCCATGTCGGCACTGTCCTGTGGCACCAAAGTTCTCATTTGTGAG
FD985421       --> TGTCTTCCATGTCGGCACTGTCCTGTGGCACCAAAGTTCTCATTTGTGAG
FD985653       --> TGTCTTCCATGTCGGCACTGTCCTGTGGCACCAAAGTTCTCATTTGTGAG
FD539891       --> TGTCTTCCATATCGGCACTGTCCTGTGGCACCAAAGTTCTCATTTGCGAC
EY895943       --> ..................................................
FD936837       --> TGTCTTCCATGTCGGCACTGTCCTGTGGCACCAAAGTTCTCATTTGTGAG

               301    -    351
UN04096        --> GAACAAACCATCGAACTAAGCCTCACGACATCAACAACATGGTCAGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- ..................................................
FD989935       <-- ..................................................
EX895861       <-- ..................................................
FD989666       <-- ..................................................
EX893030       --> GAACAAACCATCGAACTAAGCCTCACGACATCAACAACATGGTCAGATAT
FD985421       --> GAACAAACCATCGAACTAAGCCTCACGACATCAACAACATGGTCAGATAT
FD985653       --> GAACAAACCATCGAACTAAGCCTCACGACATCAACAACATGGTCAGATAT
FD539891       --> GAACAAACCATCGAACTAAGCCTCACGACATCAACAACATGGTCAGATAT
EY895943       --> ..................................................
FD936837       --> GAACAAACCATCGAACTAAGCCTCACGACGTCAACAACATGGTCAGATAT

               351    -    401
UN04096        --> TTCCTGGAGGTTAATCACAGGCGGTTCCAAAACCTTAGTTCCAGGTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- ..................................................
FD989935       <-- ..................................................
EX895861       <-- ..................................................
FD989666       <-- ..................................................
EX893030       --> TTCCTGGAGGTTAATCACAGGCGGTTCCAAAACCTTAGTTCCAGGTTTCT
FD985421       --> TTCCTGGAGGTTAATCACAGGCGGTTCCAAAACCTTAGTTCCAGGTTTCT
FD985653       --> TTCCTGGAGGTTAATCACAGGCGGTTCCAAAACCTTAGTTCCAGGTTTCT
FD539891       --> TTCCTGGAGGTTAATCACAGGTGGTTCCAAAACCTTAGTTCCAGGTTTCT
EY895943       --> ..................................................
FD936837       --> TTCCTGGAGGTTAATCACAGGTGGTTCCAAAACCTTAGTTC-AGGTTTCT

               401    -    451
UN04096        --> TGTATATTAAGTAAAGTATCATCTGAAGCACTCCGAAGATGAAACCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- ..................................................
FD989935       <-- ..................................................
EX895861       <-- ..................................................
FD989666       <-- ..................................................
EX893030       --> TGTATATTAAGTAAAGTATCATCTGAAGCACTCCGAAGATGAAACCCAAA
FD985421       --> TGTATATTAAGTAAAGTATCATCTGAAGCACTCCGAAGATGAAACCCAAA
FD985653       --> TGTATATTAAGTAAAGTATCATCTGAAGCACTCCGAAGATGAAACCCAAA
FD539891       --> TGTATATTAAGTAAAGTATCATCTGAAGCACTCCGAAAATGAAACCCAAA
EY895943       --> ..................................................
FD936837       --> TGTATATTAAGTAAAGTATCATCTGAAGCACTCCGAAGATGAAACCCAAA

               451    -    501
UN04096        --> ACATTTGGAAGAGCTATGTTCATGTCTTTACTGAGAAGACCGTAAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- ...........................................AAAAGAA
FD989935       <-- ...........................................AAAAGAA
EX895861       <-- .................................................A
FD989666       <-- ..................................................
EX893030       --> ACATTTGGAAGAGCTATGTTCATGTCTTTACTGAGAAGACCGTAAAAGAA
FD985421       --> ACATTTGGAAGAGCTATGTTCATGTCTTTACTGAGAAGACCGTAAAAGAA
FD985653       --> ACATTTGGAAGAGCTATGTTCATGTCTTTACTGAGAAGACCGTAAAAGAA
FD539891       --> ACATTTGGAAGAGCTATGTTCATGTCTTTACTGAGAAGACCGTAAAAGAA
EY895943       --> ..................................................
FD936837       --> ACATTTGGAAGAGCTATGTTCATGTCTTTACTGAGAAGACCGTAAAAGAA

               501    -    551
UN04096        --> CCACATGACAGCCGATAAGGTGAGGAAGAAGGATAGACTGAATGGCATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD544233       <-- CCACATGACAGCCGATAAGGTGAGGAAGAAGGATAGACTGAATGGCATGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989935       <-- CCACATGACAGCCGATAAGGTGAGGAAGAAGGATAGACTGAATGGCGTGA  Raphanus raphanistrum subsp. landra
EX895861       <-- CCACATGACAGCCGATAAGGTGAGGAAGAAGGATAGACTGAATGGCATGA  Raphanus sativus cv Early Scarlet Globe
FD989666       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX893030       --> CCACATGACAGCCGATAAGGTGAGGAAGAAGGATAGACTGAATGGCATGA  Raphanus sativus var. oleiformis
FD985421       --> CCACATGACAGCCGATAAGGTGAGGAAGAAGGATAGACTGAATGGCGTGA  Raphanus raphanistrum subsp. landra
FD985653       --> CCACATGACAGCCGATAAGGTGAGGAAGAAGGATAGACTGAATGGCGTGA  Raphanus raphanistrum subsp. landra
FD539891       --> CCACATGACAGCCGATAAGGTGAGGAAGAAGGATAGACTGAATGGCATGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY895943       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD936837       --> CCACATGACAGCCGATAAGGTGAGGAAGAAGGATAGACTGAATGGCATGA  Raphanus sativus var. oleiformis

               551    -    601
UN04096        --> ACTCTGCACTCCTGGTTTTAATCACTTTCCTAATGATGCCAAGGGGGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- ACTCTGCACTCCTGGTTTTAATCACTTTCCTAATGATGCCAAGGGGGGCG
FD989935       <-- ACTCTGCACTCCTGGTTTTAATCACTTTCCTAATGATGCCAAGGGGGGCG
EX895861       <-- ACTCTGCACTCCTGGTTTTAATCACTTTTCTAATGATGCCAAGGGGGGCG
FD989666       <-- ..................................................
EX893030       --> ACTCTGCACTCCTGGTTTTAATCACTTTCCTAATGATGCCAAGGGGGGCG
FD985421       --> ACTCTGCACTCCTGGTTTTAATCACTTTCCTAATGATGCCAAGGGGGGCG
FD985653       --> ACTCTGCACTCCTGGTTTTAATCACTTTCCTAATGATGCCAAGGGGGGCG
FD539891       --> ACTCTGCACTCCTGGTTTTAATCACTTTCCTAATGATGCCAAGGGGGGCG
EY895943       --> ..................................................
FD936837       --> ACTCTGCACTCCTGGTTTTAATCACTTTTCTAATGATGCCAAGGGGGGCG

               601    -    651
UN04096        --> ACAAATACACATAGAGAGAAGACCATACAAACATATCCGAGGACTTGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD544233       <-- ACAAAAACACATAGAGAGAAGACCATACAAACATATCCGAGGACTTGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989935       <-- ACAAATACACATAGAGAGAAGACCATACAAACATATCCGAGGACTTGAAC  Raphanus raphanistrum subsp. landra
EX895861       <-- ACAAAAACACATAGGGAGAAGACCATACAAACATATCCGAGGACTTGAAC  Raphanus sativus cv Early Scarlet Globe
FD989666       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX893030       --> ACAAATACACATAGAGAGAAGACCATACAAACATATCCGAGGACTTGAAC  Raphanus sativus var. oleiformis
FD985421       --> ACAAATACACATAGAGAGAAGACCATACAAACATATCCGAGGACTTGAAC  Raphanus raphanistrum subsp. landra
FD985653       --> ACAAATACACATAGAGAGAAGACCATACAAACATATCCGAGGACTTGAAC  Raphanus raphanistrum subsp. landra
FD539891       --> ACAAAAACACATAGAGAGAAGACCATACAAACATATCCGAGGACTTGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY895943       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD936837       --> ACAAAAACACATAGAGAGAAGACAATACAAACATATCCGAGGACTTGAAC  Raphanus sativus var. oleiformis

               651    -    701
UN04096        --> CCGTTTTTCTCCATGAAGCAGAAAGTATGTCAGGAAGAAGATAAGGCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- CCGTTTCTCTCCATGAAGCAGAAAGTATGTCAGGAAGAAGATAAGGCCGA
FD989935       <-- CCGTTTTTCTCCATGAAGCAGAAAGTATGTCAGGAAGAAGATAAGGCCGA
EX895861       <-- CCGTTTTTCTCCATGAAGCAGAAAGTATGTCAGGAAGAAGATAAGGCCGA
FD989666       <-- ..................................................
EX893030       --> CCGTTTTTCTCCATGAAGCAAAAA..........................
FD985421       --> CCGTTTTTCTCCATGAAGCAGAAAGTATG.....................
FD985653       --> CCGTTTTTCTCCATGAAGCAGAAAGTATGTCAG.................
FD539891       --> CCGTTTCTCTCCATGAAGCAGAAAGTATGTCAGGAAGAAGATAAGGCCGA
EY895943       --> ..................................................
FD936837       --> CCGTTTTTCTCCATGAAGCAGAAAGTATGTCAGGAAGAAGATAAGGCCGA

               701    -    751
UN04096        --> AGGCAAAAACATCCACAAAGAGGACGAATTTCACCGTTAGAGTCTTTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- AGGCAAAAACATCCACAAAGAGGACGAATTTCACCGTTAGAGTCTTTTCC
FD989935       <-- AGGCAAAAACATCCACAAAGAGGACGAATTTCACCGTTAGAGTCTTTTCC
EX895861       <-- AGGCAAAAACATCCACAAAGAGGACGAATTTCACCGTTAGAGTCTTTTCC
FD989666       <-- ..................................................
EX893030       --> ..................................................
FD985421       --> ..................................................
FD985653       --> ..................................................
FD539891       --> AGGCAAAAACATCCACAAAGAGGACGAATTTCACCGTTAGAGTCT.....
EY895943       --> ..................................................
FD936837       --> AGGCAAAAACATCCACAAAGAGGACGAATTTCACCGTTAGAGTCTTT...

               751    -    801
UN04096        --> TTTTT-AGGAGCATAGAAGAGGTAGAAGGAGATGTAGAAGATTTGTATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- TTTTTTAGGAGCATAGAAGAGGTAGAAGGAGATGTAGAAGATTTGTATGA
FD989935       <-- TTTTT-AGGAGCATAGAAGAGGTAGAAGGAGATGTAGAAGATTTGTATGA
EX895861       <-- TTTTT-AGGAGCATAGAAGAGGTAGAAGGAGATGTAGAAGATTTGTATGA
FD989666       <-- TTTTT-AGGAGCATAGAAGAGGTAGAAGGAGATGTAGAAGATTTGTATGA
EX893030       --> ..................................................
FD985421       --> ..................................................
FD985653       --> ..................................................
FD539891       --> ..................................................
EY895943       --> ..................................................
FD936837       --> ..................................................

               801    -    851
UN04096        --> CCAAGGAAACGGTGTTGATAGTGATCATAACCATTACATTCTTCTTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- CCAAGGAAACGGTGTTGATAGTGATCATAACCATTACATTCTTCTTGATC
FD989935       <-- CCAAGGAAACGGTGTTGATAGTGATCATAACCATTACATTCTTCTTGATC
EX895861       <-- CCAAGGAAACGGTGTTGATAGTGATCATAACCATTACATTCTTCTTGATC
FD989666       <-- CCAAGGAAACGGTGTTGATAGCGATCATAACCATTACATTCTTCTTGATC
EX893030       --> ..................................................
FD985421       --> ..................................................
FD985653       --> ..................................................
FD539891       --> ..................................................
EY895943       --> ..................................................
FD936837       --> ..................................................

               851    -    901
UN04096        --> ATTGCGTAGTATATCCATAGCATCGCACTGAACAATGCGATCACGTAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- ATTGCGTAGTATATCCATAGCATCGCACTGAACAATGCGATCACGTAAGG
FD989935       <-- ATTGCGTAGTATATCCATAGCATCGCACTGAACAATGCGATCACGTAAGG
EX895861       <-- ATTGCGTAGTATATCCATAGCATCGCACTGAACAATGCGATCACGTAAGG
FD989666       <-- ATTGCGTAGTATATCCATAGCATCGCACTGAACAATGCGATCACGTAAGG
EX893030       --> ..................................................
FD985421       --> ..................................................
FD985653       --> ..................................................
FD539891       --> ..................................................
EY895943       --> ..................................................
FD936837       --> ..................................................

               901    -    951
UN04096        --> GATAGACTGATAGCCTTCTGAAGACTTCCTCTTGTAAATCCGAACGAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- GATAGACTGATAGCCTTCTGAAGACTTCCTCTTGTAAATCCGCACGAACG
FD989935       <-- GATAGACTGATAGCCTTCTGAAGACCTCCTCTTGTAAATCCGAACGAACG
EX895861       <-- GATAGACTGATAGCCTTCTGAAGACTTCCTCTTGTAAATCCGAACGAACG
FD989666       <-- GATAGACTGATAGCCTTCTGAAGACCTCCTCTTGTAAATCCGAACGAACG
EX893030       --> ..................................................
FD985421       --> ..................................................
FD985653       --> ..................................................
FD539891       --> ..................................................
EY895943       --> ..................................................
FD936837       --> ..................................................

               951    -   1001
UN04096        --> TCGGTATAGGGGCAAGACACACGAAAAAGGAGATGATATTCCCTAGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- TCGGTATAGGGGCAAGACACACGAAAAAGGAGATGATATTCCCTAGAATG
FD989935       <-- TCGGTATAGGGGCAAGACACACGAAAAAGGAGATGATATTCCCTAGAATG
EX895861       <-- TCGGTATAGGGGCAAGACACACGAAAAAGGAGATGATATTCCCTAGAATG
FD989666       <-- TCGGTATAGGGGCAAGACACACGAAAAAGGAGATGATATTCCCTAGAATG
EX893030       --> ..................................................
FD985421       --> ..................................................
FD985653       --> ..................................................
FD539891       --> ..................................................
EY895943       --> ..................................................
FD936837       --> ..................................................

               1001   -   1051
UN04096        --> CCAAAGACCGTACGCAAGACGGCTACTGAAACTGCCATTTTATTTTTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- CCAAAGACCGTACGCAAGACGGCTACTGAAACTGCCATTTTATTTCTTAA
FD989935       <-- CCAAAGACCGTACGCAAGACGGCTACTGAAACTGCCATTTTATTTTTTAA
EX895861       <-- CCAAAGACCGTACGCAAGACGGCTACTGAAACTGCCATTTTATTTTTTAA
FD989666       <-- CCAAAGACCGTACGCAAGACGGCTACTGAAACTGCCATTTTATTTTTTAA
EX893030       --> ..................................................
FD985421       --> ..................................................
FD985653       --> ..................................................
FD539891       --> ..................................................
EY895943       --> ..................................................
FD936837       --> ..................................................

               1051   -   1101
UN04096        --> TCTCTCTCGAAGTAGTGAAATGGTACTGTAAAGAAAATATTAATAATAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- TCTCTCTCGAAGTAGTGAAATGGTACTGTAAAGAAAATATTAACAAAAGA
FD989935       <-- TCTCTCTCGAAGTAGTGAAATGGTACTGTAAAGAAAATATTAATAATAGA
EX895861       <-- TCTCTCTCGAAGTAGTGAAATGGTACTGTAAAGAAAATATTAATAATAGA
FD989666       <-- TCTCTCTCGAAGTAGTGAAATGGTACTGTAAAGAAAATATTAATAATAGA
EX893030       --> ..................................................
FD985421       --> ..................................................
FD985653       --> ..................................................
FD539891       --> ..................................................
EY895943       --> ..................................................
FD936837       --> ..................................................

               1101   -   1151
UN04096        --> CTCTCCCTCTCTCTTTCTCAAAGAAACCGAATGCAAGCGAGGAACGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ..................................................
FD544233       <-- CTCTCCCTCTCTCTTTCTCAAAGAAACCGAATGCAAGCGAGGAACGTTAA
FD989935       <-- CTCTCCCTCTCTCCTTCTCAAAGAAACCGAATGCAAGCGAGGAACGTTAA
EX895861       <-- CTCTCCCTCTCTCTTTCTCAAAGAAACCGAATGCAAGCGAGGAACGTTAA
FD989666       <-- CTCTCCCTCTCTCCTTCTCAAAGAAACCGAATGCAAGCGAGGAACGTTAA
EX893030       --> ..................................................
FD985421       --> ..................................................
FD985653       --> ..................................................
FD539891       --> ..................................................
EY895943       --> ..................................................
FD936837       --> ..................................................

               1151   -   1201
UN04096        --> ACACTTAGAATCATAATGAGAATCTGTTAAATGTATGATGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900389       <-- ...........................................
FD544233       <-- ACACTTAGGATCATAATGAGAATCTGTTAAATGTATGATGTCC
FD989935       <-- ACACTTAGAATCATAATGAGAATCTGTTAAATGTATGATGTCC
EX895861       <-- ACACTTAGAATCATAATGAGAATCTGTTAAATGTATGATGTCC
FD989666       <-- ACACTTAGAATCATAATGAGAATCTGTTAAATGTATGATGTCC
EX893030       --> ...........................................
FD985421       --> ...........................................
FD985653       --> ...........................................
FD539891       --> ...........................................
EY895943       --> ...........................................
FD936837       --> ...........................................