Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN04645

               1      -     51
UN04645        --> GGGAGGGGTTTTCTAATCTTCTTCTAGACTCGCATCGATCATGGCGACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- ..................................................
FD966783       <-- ..................................................
FD960597       <-- ..................................................
FD964654       --> GGGAGGGGTTTTCTAATCTTATTCTAGACTCGCATCAATCATGGCGACTG
FD970415       --> .GGAGGGGTTTTCTAATCTTCTTCTAGACCCGCATCGATCATGGCGACTG
EV548267       --> .....ctctttaaaaaaCTTATTCTATACTCGCATCGATCATGGCGACTG
EX895008       --> ..................................................
EX895247       --> ..................................................

               51     -    101
UN04645        --> ATGAAACGATACTCAATCACCTGAAAGTGGAGATCCCAGTAGACGAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- ..................................................
FD966783       <-- ..................................................
FD960597       <-- ..................................................
FD964654       --> ATGAAACGATACTCAATCACCTGAAAGTGGAGATCCCAGTAGACGAGGAA
FD970415       --> ATGAAACGATACTCAATCACCTGAAAGTAGAAATCCCAGTAGACGAGGAA
EV548267       --> ATGTAACGATACTCAATCACCTGAAAGTGGAGATCCCAGTAGACGAGGAA
EX895008       --> ..................................................
EX895247       --> ..................................................

               101    -    151
UN04645        --> TCTCTTCTTCTGAACCCAGACTCGAGCGTCGGTCTCGTCATCATTGACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- ..................................................
FD966783       <-- ..................................................
FD960597       <-- ..................................................
FD964654       --> TCTCTTCTTCTGAACCCAGACTCGAGCGTCGGTCTCGTCATCATTGACGT
FD970415       --> TCTCTTCTTCTGAACCCAGACTCGAGCGTCGGTCTCGTCATCATTGACGT
EV548267       --> TCTCTTCTTCTGAACCCAGACTCGAGCGTCGGTCTCGTCATCATTGACCT
EX895008       --> ..................................................
EX895247       --> ..................................................

               151    -    201
UN04645        --> GGTCAACGGCTTCTGCACCGTTGGCTCCGGCAACATGGCTCCAACAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- .................................CATGGCTCCAACAAAGC
FD966783       <-- ..........................................AACAAAGC
FD960597       <-- ..................................................
FD964654       --> GGCCAATGGTTTCTGCACCGTTGGCTCCGGCAACATGGCTCCAACAAAGC
FD970415       --> GGTCAACGGCTTCTGCACCGTTGGCTCCGGCAACATGGCTCCAACAAAGC
EV548267       --> GGTCAACGGCTTCTGCACCGTTGGCTCCGGCAACATGGCTCCAACAAAGC
EX895008       --> ..................................................
EX895247       --> ..................................................

               201    -    251
UN04645        --> CGAGCGAACAGATATCGAAGATGGTTGAGGAATCTGCACGGCTCGCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- CGAGCGAACAGATATCGAAGATGGTTGAGGAATCTGCACGGCTCGCAAGA
FD966783       <-- CGAGCGAACAGATATCGAAGATGGTTGAGGAATCTGCACGGCTCGCAAGA
FD960597       <-- .................AAGATGGTTGAGGAATCTGCACGGCTCGCAAGA
FD964654       --> CGAGCGAACAGATATCGAAGATGGTTGAGGAATCTGCACGGCTCGCAAGA
FD970415       --> CGAGCGAACAGATATCGAAGATGGTTGAGGAATCTGCACGGCTCGCAAGA
EV548267       --> CGAGCGAACAGATATCGAAGATGGTTGAGGAATCTGCACGGCTCGCAAGA
EX895008       --> ..................................................
EX895247       --> ..................................................

               251    -    301
UN04645        --> GAGTTCTGCGATCGTAAATGGCCCGTCTTTGCGTTTCTCGACACTCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- GAGTTCTGCGATCGTAAGTGGCCCGTCTTTGCGTTTCTCGACACTCATCA
FD966783       <-- GGGTTCTGCGATCGTAAATGGCCCGTCTTTGCGTTTCTCGACACTCATCA
FD960597       <-- GAGTTCTGCGATCGTAAATGGCCCGTCTTTGCGTTTCTCGACACTCATCA
FD964654       --> GAGTTCTGCGATCGTAAATGGCCCGTCTTTGCGTTTCTCGACACTCATCA
FD970415       --> GGGTTCTGCGATCGTAAATGGCCCGTCTTTGCGTTTCTCGACACTCATCA
EV548267       --> GAGTTCTGCGATCGTAAGTGGCCCGTCTTTGCGTTTCTCGACACTCATCA
EX895008       --> ..................................................
EX895247       --> ..................................................

               301    -    351
UN04645        --> TCCTGATGTTCCGGAGATCCCTTACCCTCCTCATTGTATTATAGGAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- TCCTGATGTTCCGGAGATCCCTTACCCTCCTCATTGTATTATAGGAACTC
FD966783       <-- TCCTGATGTTCCGGAGATCCCTTACCCACCTCATTGTATTATAGGAACTC
FD960597       <-- TCCTGATGTTCCGGAGATCCCTTACCCTCCTCATTGTATTATAGGAACTC
FD964654       --> TCCTGATGTTCCGGAGATCCCTTACCCTCCTCATTGTATTATAGGAACTC
FD970415       --> TCCTGATGTTCCGGAGATCCCTTACCCACCTCATTGTATTATAGGAACTC
EV548267       --> TCCTGATGTTCCGGAGATCCCTTACCCTCCTCATTGTATTATAGGAACTC
EX895008       --> ..................................................
EX895247       --> ..................................................

               351    -    401
UN04645        --> AAGAAGCAGAGCTTGTCCCTGCACTACAGTGGCTTGAAAGTGAGGATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- AAGAAGCAGAGCTTGTCCCTGCACTACAGTGGCTTGAAAGTGAGGATTGT
FD966783       <-- AAGAAGCAGAGCTTGTCCCTGCACTACAGTGGCTTGAAAGTGAGGATTGT
FD960597       <-- AAGAAGCAGAGCTTGTCCCTGCACTACAGTGGCTTGAAAGTGAGGATGGT
FD964654       --> AAGAAGCAGAGCTTGTCCCTGCACTACAGTGGCTTGAAAGTGAGGATGGT
FD970415       --> AAGAAGCAGAGCTTGTCCCTGCACTACAGTGGCTTGAAAGTGAGGATTGT
EV548267       --> AAGAAGCAGAGCTTGTCCCTGCACTACAGTGGCTTGAAAGTGAGGATTGT
EX895008       --> ..................................................
EX895247       --> ..................................................

               401    -    451
UN04645        --> GTCACTCTTATGAGGAAGGATTGCATTAATGGGTTTGTGGGTTCGATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- GTCACTCTTATGAGGAAGGATTGCATTAATGGGTTTGTGGGTTCGATGGA
FD966783       <-- GTCACTCTTATGAGGAAGGATTGCATTAATGGGTTTGTGGGTTCGATGGA
FD960597       <-- GTCACTCTTATGAGGAAGGATTGCATTAATGGGTTTGTGGGTTCGATGGA
FD964654       --> GTCACTCTTATGAGGAAGGATTGCATTAATGGGTTTGTGGGTTCGATGGA
FD970415       --> GTCACTCTTATGAGGAAGGATTGCATTAATGGGTTTGTGGGTTCGATGGA
EV548267       --> GTCACTCTTATGAGGAAGGATTGCATTAATGGGTTTGTGGGTTCGATGGA
EX895008       --> ...................................gGTGGGTTCGATGGA
EX895247       --> ...................................gGTGGGTTCGATGGA

               451    -    501
UN04645        --> GAAAGACGGTTCTAATAAGTTTGTGGATTGGGTTAAGGAGAAACAGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- GAAAGATGGTTCTAATGTGTTTGTGGATTGGGTTAAGGAGAAACAGATCA
FD966783       <-- GAAAGACGGTTCTAATAAGTTTGTGGATTGGGTTAAGGAGAAACAGATCA
FD960597       <-- GAAAGACGGTTCTAATAAGTTTGTGGATTGGGTTAAGGAGAAACAGATCA
FD964654       --> GAAAG.............................................
FD970415       --> GAAAGACGGTTCTAATAAGTTTGTGGATTGGGTTAAGGAGAAACAGATCA
EV548267       --> GAAAGATGGTTCTAATGTGTTTGTGGATTGGGTTAAGGAGAAACAGATCA
EX895008       --> GAAAGACGGTTCTAATAAGTTTGTGGATTGGGTTAAGGAGAAACAGATCA
EX895247       --> GAAAGACGGTTCTAATAAGTTTGTGGATTGGGTTAAGGAGAAACAGATCA

               501    -    551
UN04645        --> AAGTTATTGTGGTTGTGGGTATCTGCACAGACATATGTGTGTTTGATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- AAGTTATTGTGGTTGTAGGTATCTGCACAGACATATGTGTGTTTGATTTT
FD966783       <-- AAGTTATTGTGGTTGTGGGTATCTGCACAGACATATGTGTGTTTGATTTT
FD960597       <-- AAGTTATTGTGGTTGTGGGTATCTGCACAGACATATGTGTGTTTGATTTT
FD964654       --> ..................................................
FD970415       --> AAGTTATTGTGGTTGTGGGTATCTGCACAGACATATGTGTGTTTGATTTT
EV548267       --> AAGTTATTGTGGTTGTAGGTATCTGCACAGACATATGTGTGTTTGATTTT
EX895008       --> AAGTTATTGTGGTTGTGGGTATCTGCACAGACATATGTGTGTTTGATTTT
EX895247       --> AAGTTATTGTGGTTGTGGGTATCTGCACAGACATATGTGTGTTTGATTTT

               551    -    601
UN04645        --> GTGGCTACTGTACTCTCTGCTCGAAACCACAGTGTTCTTCCTCCTCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- GTGGCTACTGTACTCTCTGCTCGAAACCACAGTGTTCTTCCTCCTCTGGA
FD966783       <-- GTGGCTACTGTACTCTCTGCTCGAAACCACAGTGTTCTTCCTCCTCTGGA
FD960597       <-- GTGGCTACTGTACTCTCTGCTCGAAACCACAGTGTTCTTCCTCCTTTGGA
FD964654       --> ..................................................
FD970415       --> GTGGCTACTGTACTCTCTGCTCGAAACCACAGTGTTCTTCCTCCTCTGGA
EV548267       --> GTGGCTACTGTACTCTCTGCTCGAAACCACAGTGTTCTTCCTCCTCTGGA
EX895008       --> GTGGCTACTGTACTCTCTGCTCGAAACCACAGTGTTCTTCCTCCTCTGGA
EX895247       --> GTGGCTACTGTACTCTCTGCTCGAAACCACAGTGTTCTTCCTCCTCTGGA

               601    -    651
UN04645        --> AGATGTGATAGTGTACTCACGTGGATGCGCCACTTATGACCTTCCTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- AGATGTGATAGTGTACTCACGTGGATGCGCCACTTATGACCTTCCTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966783       <-- AGATGTGATAGTGTACTCACGTGGATGCGCCACTTATGACCTTCCTCTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960597       <-- AGATGTGATAGTTTACTCACGTGGTTGCGCCACTTTTGACCTTCCTCTTA  Raphanus raphanistrum subsp. maritimus
FD964654       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD970415       --> AGATGTGATAGTGTACTCACGTGGATGCGCCACTTATGACCTTCCTCTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548267       --> AGATGTGATAGTGTACTCACGTGGATGCGCCACTTATGACCTTCCTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895008       --> AGATGTGATAGTTTACTCACGTGGATGCGCCACTTATGACCTTCCTCTTA  Raphanus sativus cv Early Scarlet Globe
EX895247       --> AGATGTGATAGTTTACTCACGTGGATGCGCCACTTATGACCTTCCTCTTA  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN04645        --> ATGTCGCAAAAACCATTAAAGGCGCTCAGGCTCATCCCCAGGAGATGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- ATGTCGCAAAAACCATTAAAGGCGCTCAGGCTCATCCCCAGGAGATGATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966783       <-- ATGTCGCAAAAACCATTAAAGGCGCTCAGGCTCATCCCCAGGAGATGATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960597       <-- ATGTTGCAAAAAGCATTAAAGGCGCTCAGGCTCATCCCCAGGAGATGATG  Raphanus raphanistrum subsp. maritimus
FD964654       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD970415       --> ATGTCGCAAAAACCATTAAAGGCGCTCAG-CTCATCCCCAGGAGATGATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548267       --> ATGTCGCAAAAACCATTAAAGGCGCTCAGGCTCATCCCCAGGAGATGATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895008       --> ATGTTGCAAAAAACATTAAAGGCGCTCAGGCTCATCCCCAGGAGATGATG  Raphanus sativus cv Early Scarlet Globe
EX895247       --> ATGTTGCAAAAAACATTAAAGGCGCTCAGGCTCATCCCCAGGAGATGATG  Raphanus sativus cv Early Scarlet Globe

               701    -    751
UN04645        --> CACCATGTAGGTCTATACATGGCTAAAGGAAGAGGAGCTAAGGTAGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- CACCATGTAGGTCTATACATGGCTAAAGGAAGAGGAGCTAAGGTAGTCTC
FD966783       <-- CACCATGTAGGTCTATACATGGCTAAAGGAAGAGGAGCTAAGGTAGTCTC
FD960597       <-- CACCATGTAGGTCTATACATGGCTAAAGGAAGAGGAGCTAAAGTAGTCTT
FD964654       --> ..................................................
FD970415       --> CACCATGTAGGTCTATACATGGCTA.........................
EV548267       --> CACCATGTATGTCTATACATGGCTAAAGGAAGAGGAGCTAAAGTAGTCTC
EX895008       --> CACCATGTAGGTCTATACATGGCTAAAGGAAGAGGAGCTAAGGTAGTCTC
EX895247       --> CACCATGTAGGTCTATACATGGCTAAAGGAAGAGGAGCTAAGGTAGTCTC

               751    -    801
UN04645        --> TGAAGTTTCTTTTGATCCTTGAAAGACTAAAACTTATATCATTCTTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- TGAAGTTTCTTTTGATCCTTGAAAGACTAAAACTTATATCATTCTTGATT
FD966783       <-- TGAAGTTTCTTTTGATCCTTGAAAGACTAAAACTTATATCATTCTTGATT
FD960597       <-- TGAAGTGTCTTTTGATCCTTGAAAGACTAAAACTTATATCATTCTTGATT
FD964654       --> ..................................................
FD970415       --> ..................................................
EV548267       --> TGAAGTTTCTTTTGATCCTTGAAAGACTAAAACTTATATCATTCTT....
EX895008       --> TGAAGTTTCTTTTGATCCTTGAAAGACTAAAACTTATATCATTCTTGATT
EX895247       --> TGAAGTTTCTTTTGATCCTTGAAAGACTAAAACTTATATCATTCTTGATT

               801    -    851
UN04645        --> TCGATTGATTCAGTCGATTGTTGAGTTTGCCTTTTTATGTTGTAAATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- TCGATTGATTCAGTCGATTGTTGAGTTTGCCTTTTTATGTTGTAAATTGT
FD966783       <-- TCGATTGATTCAGTCGATTGTTGGGTTTGTCTTTTTATGTTGTAAATTGT
FD960597       <-- TCG----ATTCAGTCGATTGTTGAGTTTGCCTTTTTATGTTGTAAATTGT
FD964654       --> ..................................................
FD970415       --> ..................................................
EV548267       --> ..................................................
EX895008       --> TCGATTGATTCAGTCGATTGTTGAGTTTGCCTTTTTATGTTGTAAATTGT
EX895247       --> TCGATTGATTCAGTCGATTGTTGAGTTTGCCTTTTTATGTTGTAAATTGT

               851    -    901
UN04645        --> TCATGAAAGCTTGTTTGCTGAAGATCAACTTATATGTATTTGAATTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- TCACGAAAGCTTGTTTGCTGAAGATCAACTTATATGTATTTGAATTCTCA
FD966783       <-- TCATGAAAGCTTGTTTGCTGAAGATCAACTTATATGTAATTGAATTCTCA
FD960597       <-- TCATGAAAGCTTGTTTGCTGAAGATCAA-TTATATGTATTTGAtttggta
FD964654       --> ..................................................
FD970415       --> ..................................................
EV548267       --> ..................................................
EX895008       --> TCATGAAAGCTTGTTTGCTGAAGATCAACTTATATGTATTTGAATTCTCA
EX895247       --> TCATGAAAGCTTGTTTGCTGAAGATCAACTTATATGTATTTGAATTCTCA

               901    -    951
UN04645        --> TTTGTCTAAATGAAATGTTTTAGTATGAG...
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543973       <-- TTTGTCTAAATGAAATGTTTCAGTTTGAc...
FD966783       <-- TTTGTCTAAATGAAATGTTTCAGTTTGAttgt
FD960597       <-- aatgaaatgtttcagtttgg............
FD964654       --> ................................
FD970415       --> ................................
EV548267       --> ................................
EX895008       --> TTTGTCTAAATGAAATGTTTTAGTATGAG...
EX895247       --> TTTGTCTAAATGAAATGTTTTAGTATGAG...