1      -     51
UN04646        --> GGGGAGAGATGTAAAGGTGGCGGGAGAGGGTTGGGTGAGATCATACGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..................................................
FD578565       --> GGGGAGAGATGTAAAGGTGGCGGGAGAGGGTTGGGTGAGATCATACGAAA
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> ..................................................
FY431222       --> ..................................................
FY451061       --> ..................................................

               51     -    101
UN04646        --> AGGACGGTGCCCTCTCCTATCAATCTAAAACTGTATCTTCCTTCTTCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..................................................
FD578565       --> AGGACGGTGCCCTCTCCTATCAATCTAAAACTGTATCTTCCTTCTTCGAC
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> ..................................................
FY431222       --> ..................................................
FY451061       --> ..................................................

               101    -    151
UN04646        --> TGAAAGTGGAGAGAGCTTTTGTTTCACGTTTCTCATCGTGAAAAAAGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..................................................
FD578565       --> TGAAAGTGGAGAGAGCTTTTGTTTCACGTTTCTCATCGTGAAAAAAGGGA
FD549370       --> .....ggGGAGAGAGCTTTTGTTTCACGTTTCTCATCGCCAAAAAAGGGA
FD551122       --> ..................................................
FY429959       --> ..................................................
FY431222       --> ..................................................
FY451061       --> ..................................................

               151    -    201
UN04646        --> CAAAATCCCAATCCGCTTTTTAACTCGGAAAGTTGTAAGACGTACACACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..................................................
FD578565       --> CAAAATCCCAATCCGCTTTTTAACTCGGAAAGTTGTAAGACGTACACACA
FD549370       --> CAAAATCCCAATCCGCTTTTTAACTCGGAAAGTTGTAAGACGTACACACA
FD551122       --> ..................................................
FY429959       --> ..................................................
FY431222       --> ..................................................
FY451061       --> ..................................................

               201    -    251
UN04646        --> ATCAAATCCCTCGGGACTAGAGCTTTCAGGTCT-AGATGGATTTCTGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..................................................
FD578565       --> ATCAAATCCCTCGGGACTAGAGCTTTCAGGTCTGAGATGGATTTCTGGCC
FD549370       --> ATCAAATCCCTCGGGACTAGAGCTTTCAGGTCT-AGATGGATTTCTGGCC
FD551122       --> .ggAAATCCCTCGGGACTAGAGCTTTCAGGTCT-AGATGGATTTCTGGCC
FY429959       --> ...........................................TCTGGCC
FY431222       --> ..................................................
FY451061       --> ..................................................

               251    -    301
UN04646        --> GGAGTTTATGGCGAGCAGCTGGGGAAGGGAGTTCGTAGCCGGTGGATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..................................................  Raphanus sativus cv GSK3-1
FD578565       --> GGAGTTTATGGCGAGCAGCTGGGGAAGGGAGTTCGTAGCCGGTGGATTCG  Raphanus sativus cv Rat-Tail Radish #3870
FD549370       --> GGAGTTTATGGCGAGCAGCTGGGGAAGGGAGTTCGTAGCCGGTGGATTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551122       --> GGAGTTTATGGCGAGCAGCTGGGGAAGGGAGTTCGTACCCGGTGGATTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY429959       --> GGAGTTTATGGCGAGCAGCTGGGGAAGGGAGTTCGTAGCCGGTGGATTTG  Raphanus sativus cv GSK3-1
FY431222       --> .........GGCGAGCAGCTGGGGAAGGGAGTTCGTAGCCGGTGGATTTG  Raphanus sativus cv GSK3-1
FY451061       --> ................................TCGTAGCCGGTGGATTTG  Raphanus sativus cv GSK3-1

               301    -    351
UN04646        --> GAGGCGTTGCCGGTATTATTTCCGGCTATCCCTTGGACACGCTGAGAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..................................................  Raphanus sativus cv GSK3-1
FD578565       --> GAGGCGTTGCCGGTATTATTTCCGGATATCCCTTGGACACGCTGAGAATT  Raphanus sativus cv Rat-Tail Radish #3870
FD549370       --> GAGGCGTTGCCGGTATTATTTCCGGATATCCCTTGGACACGCTGAGAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551122       --> GAGGCGTTGCCGGTATTATTTCCGGATATCCCTTGGACACG.........  Raphanus raphanistrum subsp. raphanistrum (NY)
FY429959       --> GAGGCGTTGCCGGTATTATTTCCGGCTATCCCTTGGACACGCTGAGAATT  Raphanus sativus cv GSK3-1
FY431222       --> GAGGCGTTGCCGGTATTATTTCCGGCTATCCCTTGGACACGCTGAGAATT  Raphanus sativus cv GSK3-1
FY451061       --> GAGGCGTTGCCGGTATTATTTCCGGCTATCCCTTGGACACGCTGAGAATT  Raphanus sativus cv GSK3-1

               351    -    401
UN04646        --> CGTCAGCAACAGAGCTCCAAATCCGGATCTGCCTTTACCATTCTCCGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..................................................
FD578565       --> CGTCAGCAACAGAGCTCCAAATCCGGATCTGCCTTTACCATTCTCCGCCG
FD549370       --> CGTCAGCAACAGAGCTCCAAATCCGGATCTGCCTTTACCATTCTCCGCCG
FD551122       --> ..................................................
FY429959       --> CGTCAGCAACAGAGCTCCAAATCCGGATCTGCCTTTACCATTCTCCGCCG
FY431222       --> CGTCAGCAACAGAGCTCCAAATCCGGATCTGCCTTTACCATTCTCCGCCG
FY451061       --> CGTCAGCAACAGAGCTCCAAATCCGGATCTGCCTTTACCATTCTCCGCCG

               401    -    451
UN04646        --> GATGCTTGCCGTCGAGGGTCCCGCCTCACTCTACAGAGGTATGGCTGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..................................................
FD578565       --> GATGCTTGCCGTCGAGGGTCCCGCCTCACTCTACAGAGGTATGGCTGCAC
FD549370       --> GATGCTTGCCGTCGAGGGCCCCGCCTCACTCTACAGAGGTATGGCTGCAC
FD551122       --> ..................................................
FY429959       --> GATGCTTGCCGTCGAGGGTCCCGCCTCACTCTACAGAGGTATGGCTGCAC
FY431222       --> GATGCTTGCCGTCGAGGGTCCCGCCTCACTCTACAGAGGTATGGCTGCAC
FY451061       --> GATGCTTGCCGTCGAGGGTCCCGCCTCACTCTACAGAGGTATGGCTGCAC

               451    -    501
UN04646        --> CCTTGGCCTCCGTCACCTTTCAGAATGCTATGGTATTCCAGATATATGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..................................................
FD578565       --> CCTTGGCCTCCGTCACCTTTCAGAATGCTATGGTATTCCAGATATATGCC
FD549370       --> CCTTGGCCTCCGTCACCTTTCAGAATGCTAAGGTATTCCAGATATATGCC
FD551122       --> ..................................................
FY429959       --> CCTTGGCCTCCGTCACCTTTCAGAATGCTATGGTATTCCAGATATATGCC
FY431222       --> CCTTGGCCTCCGTCACCTTTCAGAATGCTATGGTATTCCAGATATATGCC
FY451061       --> CCTTGGCCTCCGTCACCTTTCAGAATGCTATGGTATTCCAGATATATGCC

               501    -    551
UN04646        --> ATACTCTCTCGCTCCTTTGATTCCTCTCTTCCCCTAGAAGAGCCTCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..................................................
FD578565       --> ATACTCTCTCGCTCCTTTGATTCCTCTCTTCCCCTAGAAGAGCCTCCTTC
FD549370       --> ATACTCTCTCGCTCCTTTGATTCCTCTCTTCCCCTAGAAGAGCCTCCTTC
FD551122       --> ..................................................
FY429959       --> ATACTCTCTCGCTCCTTTGATTCCTCTCTTCCCCTAGAAGAGCCTCCTTC
FY431222       --> ATACTCTCTCGCTCCTTTGATTCCTCTCTTCCCCTAGAAGAGCCTCCTTC
FY451061       --> ATACTCTCTCGCTCCTTTGATTCCTCTCTTCCCCTAGAAGAGCCTCCTTC

               551    -    601
UN04646        --> CTACAGAGGCGTTGCTCTTGGTGGGGTTGGCACTGGCGCTGTTCAGAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ..ACAGAGGCGTTGCTCTTGGTGGGGTTGGCACTGGCGCTGTTCAGAGCC
FD578565       --> CTACAGAGGCGTTGCTCTTGGTGGGGTTGGCACTGGCGCTGTTCAGAGCC
FD549370       --> CTACAGAGGCGTTGCTCTTGGTGGGGTTGGCACTGGCGCTGTTCAGAGCC
FD551122       --> ..................................................
FY429959       --> CTACAGAGGCGTTGCTCTTGGTGGGGTTGGCACTGGCGCTGTTCAGAGCC
FY431222       --> CTACAGAGGCGTTGCTCTTGGTGGGGTTGGCACTGGCGCTGTTCAGAGCC
FY451061       --> CTACAGAGGCGTTGCTCTTGGTGGGGTTGGCACTGGCGCTGTTCAGAGCC

               601    -    651
UN04646        --> TCTTGCTTAGCCCCGTTGAGCTCATCAAGATTCGTCTTCAGCTGCAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- TCTTGCTTAGCCCCGTTGAGCTCATCAAGATTCGTCTTCAGCTGCAGCAG
FD578565       --> TCTTGCTTAGCCCCGTTGAGCTCATCAAGATTCGTCTTCAGCTGCAGCAG
FD549370       --> TCTTGCTTAGCCCCGTTGAGCTCATCAAGATCCGTCTTCAGCTGCAGCAG
FD551122       --> ..................................................
FY429959       --> TCTTGCTTAGCCCCGTTGAGCTCATCAAGATTCGTCTTCAGCTGCAGCAG
FY431222       --> TCTTGCTTAGCCCCGTTGAGCTCATCAAGATTCGTCTTCAGCTGCAGCAG
FY451061       --> TCTTGCTTAGCCCCGTTGAGCTCATCAAGATTCGTCTTCAGCTGCAGCAG

               651    -    701
UN04646        --> AGCAACAGCGGCCCCATCTGCTTGGCTAAGACCATCCTTAGGAGAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- AGCAACAGCGGCCCCATCTGCTTGGCTAAGACCATCCTTAGGAGAGAAGG
FD578565       --> AGCAACAGCGGCCCCATCTGCTTGGCTAAGACCATCCTTAGGAGAG....
FD549370       --> AGCAACAGCGGCCCCATCTGCTTGGCTAAGACCATCCTTAGGAGAGAAGG
FD551122       --> ..................................................
FY429959       --> AGCAACAGCGGCCCCATCTGCTTGGCTAAGACCATCCTTAGGAGAGAAGG
FY431222       --> AGCAACAGCGGCCCCATCTGCTTGGCTAAGACCATCCTTAGGAGAGAAGG
FY451061       --> AGCAACAGCGGCCCCATCTGCTTGGCTAAGACCATCCTTAGGAGAGAAGG

               701    -    751
UN04646        --> TCTCAAAGGGATTTACAAAGGCCTTACCATAACTGTTCTCAGAGATGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- TCTCAAAGGGATTTACAAAGGCCTTACCATAACTGTTCTCAGAGATGCTC
FD578565       --> ..................................................
FD549370       --> TCTCAAAGGCATTTACAAAGGCCTTACCATAACTGTTCTCAGAGATGCTC
FD551122       --> ..................................................
FY429959       --> TCTCAAAGGGATTTACAAAGGCCTTACCATAACTGTTCTCAGAGATGCTC
FY431222       --> TCTCAAAGGGATTTACAAAGGCCTTACCATAACTGTTCTCAGAGATGCTC
FY451061       --> TCTCAAAGGGATTTACAAAGGCCTTACCATAACTGTTCTCAGAGATGCTC

               751    -    801
UN04646        --> CTGCTCACGGCCTCTATTTCTGGACTTACGAGTACGTAC-GAGAAAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- CTGCTCACGGCCTCTATTTCTGGACTTACGAGTACGTAC-GAGAAAGGCT
FD578565       --> ..................................................
FD549370       --> CTTCCCACGGCCTCTATTTCTGGACTTACGAGTACGTAC-GAGAAATGCT
FD551122       --> ..................................................
FY429959       --> CTGCTCACGGCCTCTATTTCTGGACTTACGAGTACGTAC-GAGAAAGGCT
FY431222       --> CTGCTCACGGCCTCTATTTCTGGACTTACGAGTACGTAC-GAGAAAGGCT
FY451061       --> CTGCTCACGGCCTCTATTTCTGGACTTACGAGTACGTACCAAGAAAGGCT

               801    -    851
UN04646        --> TCATCCCGGCTGCAGGAAGAGTGGAGAAGAAACCCTCCGCACCATGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- TCATCCCGGCTGCAGGAAGAGTGGAGAAGAAACCCTCCGCACCATGCTGG
FD578565       --> ..................................................
FD549370       --> TCATCCCGGCTGCAGGAAGA..............................
FD551122       --> ..................................................
FY429959       --> TCATCCCGGCTGCAGGAAGAGTGGAGAAGAAACCCTCCGCACCATGCTGG
FY431222       --> TCATCCCGGCTGCAGGAAGAGTGGAGAAGAAACCCTCCGCACCATGCTGG
FY451061       --> TCATCCCGGCTGCAGGAAGAGTGGAGAAGAAACCCTCCGCACCATGCTGG

               851    -    901
UN04646        --> TCGCAGGTGGCCTGGCTGGTGTCTCCAGCTGGGTCGTTTGCTATCCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- TCGCAGGTGGCCTGGCTGGTGTCTCCAGCTGGGTCGTTTGCTATCCTCTT
FD578565       --> ..................................................
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> TCGCAGGTGGCCTGGCTGGTGTCTCCAGCTGGGTCGTTTGCTATCCTCTT
FY431222       --> TCGCAGGTGGCCTGGCTGGTGTCTCCAGCTGGGTCGTTTGCTATCCTCTT
FY451061       --> TC................................................

               901    -    951
UN04646        --> GATGTCGTCAAGACCAGGCTTCAACAAGGAAATCATGGTTCTTACGATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- GATGTCGTCAAGACCAGGCTTCAACAAGGAAATCATGGTTCTTACGATGG
FD578565       --> ..................................................
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> GATGTCGTCAAGACCAGGCTTCAACAAGGAAATCATGGTTCTTACGATGG
FY431222       --> GATGTCGTCAAGACCAGGCTTCAACAAGGAAATCATGGTTCTTACGATGG
FY451061       --> ..................................................

               951    -   1001
UN04646        --> CATTACCGATTGTTTTCGTAAGAGCATCGCACAGGAAGGCTATGGGGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- CATTACCGATTGTTTTCGTAAGAGCATCGCACAGGAAGGCTATGGGGTTC
FD578565       --> ..................................................
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> CATTACCGATTGTTTTCGTAAGAACATCGCACAGGAAGGCTATGGGGTTC
FY431222       --> CATTACCGATTGTTTTCGTAAGAGCATCGCACAGGAAGGCTATGGGGTTC
FY451061       --> ..................................................

               1001   -   1051
UN04646        --> TCTGGCGTGGCCTCGGGACTGCAGTTGCCAGGGCCTTTGTTGTCAACGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- TCTGGCGTGGCCTCGGGACTGCAGTTGCCAGGGCCTTTGTTGTCAACGGT
FD578565       --> ..................................................
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> TCTGGCGTGGCCTCGGGACTGCAGTTGCCAGGGCCTTTGTTGTCAACGGT
FY431222       --> TCTGGCGTGGCCTCGGGACTGCAGTTGCCAGGGCCTTTGTTGTCAACGGT
FY451061       --> ..................................................

               1051   -   1101
UN04646        --> GCCATTTTTGCTGCTTATGAAGTTGCCTTGAGGTGTTTATTCCCTCAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- GCCATTTTTGCTGCTTATGAAGTTGCCTTGAGGTGTTTATTCCCTCAACT
FD578565       --> ..................................................
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> GCCATTTTTGCTGCTTATGAAGTTGCCTTGAGGTGTTTATTC........
FY431222       --> GCCATTTTTGCTGCTTATGAAGTTGCCTTGAGGTGTTTATTCCCTCAACT
FY451061       --> ..................................................

               1101   -   1151
UN04646        --> GACGTCCGCTGATGTTGCCAACGGAGATCTGAGTAAAAAGCCAAAACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- GACGTCCGCTGATGTTGCCAACGGAGATCTGAGTAAAAAGCCAAAACAAG
FD578565       --> ..................................................
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> ..................................................
FY431222       --> GACGTCCGCTGATGTT..................................
FY451061       --> ..................................................

               1151   -   1201
UN04646        --> ACGCCTTGAAGATTCATAAAGAGTGACTATAGTTAATAAGATTGTTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- ACGCCTTGAAGATTCATAAAGAGTGACTATAGTTAATAAGATTGTTAACA
FD578565       --> ..................................................
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> ..................................................
FY431222       --> ..................................................
FY451061       --> ..................................................

               1201   -   1251
UN04646        --> TATCTGACTCGCTTTATGAATCAGGCAGAAACTTCGTCTGTGATAAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- TATCTGACTCGCTTTATGAATCAGGCAGAAACTTCGTCTGTGATAAATAG
FD578565       --> ..................................................
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> ..................................................
FY431222       --> ..................................................
FY451061       --> ..................................................

               1251   -   1301
UN04646        --> CTGAGCACCAAGAACTTTGGAAAACCGATCCCAAACACAAAGAAAGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- CTGAGCACCAAGAACTTTGGAAAACCGATCCCAAACACAAAGAAAGCAGA
FD578565       --> ..................................................
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> ..................................................
FY431222       --> ..................................................
FY451061       --> ..................................................

               1301   -   1351
UN04646        --> TGGAATGAAAATTCTTTTGCTCTCTGTTTTATCTTTTACCTTGTTTGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430082       <-- TGGAATGAAAATTCTTTTGCTCTCTGTTTTATCTTTTACCTTGTTTGCTA
FD578565       --> ..................................................
FD549370       --> ..................................................
FD551122       --> ..................................................
FY429959       --> ..................................................
FY431222       --> ..................................................
FY451061       --> ..................................................

               1351   -   1401
UN04646        --> AAATTAGAGTGCC
                   ~~~~~~~~~~~~~
FY430082       <-- AAATTAGAGTGCC
FD578565       --> .............
FD549370       --> .............
FD551122       --> .............
FY429959       --> .............
FY431222       --> .............
FY451061       --> .............