1      -     51
UN04770        --> ATCAAACAGCTAAGTACATAGACTTTCTTCTTTAAAGAATCAAATATAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- ATCAAACAGCTAAGTACATAGACTTTCTTCTTTAAAGAATCAAATATAGT
FD559287       <-- .................................AAAGAATCAAATATAGT
EX765302       <-- ..................................AAGAATCAAATATAGT
EV526923       <-- ...................................AGAATCAAATATAGT
EV551786       <-- ...................................AGAATCAAATATAGT
FD556545       <-- ....................................GAATCAAATATAGT
EX746812       <-- ..................................................
FD980061       <-- ..................................................
EX751135       --> ....................GACTTTCTTCTTTAAAGAATCAAATATAGT
EX769099       --> .................................AAAGAATCAAATATAGT
FD555018       --> .................................AAAGAATCAAATATAGT
FD976011       --> .................................AAAGAATCAAATATAGT

               51     -    101
UN04770        --> ATACATAAATATACATGAGACTCATATCTTATTACAATAATCTGGTGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- ATACATAAATATACATGAGACTCATATCTTATTACAATAATCTGGTGTAT
FD559287       <-- ATACATAAATATACATGAGACTCATATCTTATTACAATAATCTGGTGTAT
EX765302       <-- ATACATAAATATACATGAGACTCATATCTTATTACAATAATCTGGTGTAT
EV526923       <-- ATACATAAATATACATGAGACTCATATCTTATTACAATAATCTGGTGTAT
EV551786       <-- ATACATAAATATACATGAGACTCATATCTTATTACAATAATCTGGTGCAT
FD556545       <-- ATACATAAATATACATGAGACTCATATCTTATTACAATAATCTGGTGTAT
EX746812       <-- .....................TCATATCTTATTACAATAATCTGGTGTAT
FD980061       <-- ..................................................
EX751135       --> ATACATAAATATACATGAGACTCATATCTTATTACAATAATCTGGTGTAT
EX769099       --> ATACATAAATATACATGAGACTCATATCTTATTACAATAATCTGGGGTAT
FD555018       --> ATACATAAATATACATGAAACTCATATCTTATTACAATAATCTGGGGTAT
FD976011       --> ATACATAAATATACATGAGACTCATATCTTATTACAATAATCTGGTGTAT

               101    -    151
UN04770        --> ATGTATAGCTTCTAATACCAAGCTCGAAAGATAACTTGGCTGAAATGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- ATGTATAGCTTCTAATACCAAGCTCGAAAGATAACTTGGCTGAAATGACA
FD559287       <-- ATGTATAGCTTCTAATACCAAGCTCGAAAGATAACTTGGCTGAAATGACA
EX765302       <-- ATGTATAGCTTCTAATACCAAGCTCGAAAGATAACTTGGCTGAAATAACA
EV526923       <-- ATGTATAGCTTCTAATACCAAGCTCGAAAGATAACTTGGATGAAATGACA
EV551786       <-- ATGTATAGCTTCTAATACCAAGCTCGAAAGATAACTTGGCTGAAATGACA
FD556545       <-- ATGTATAGCTTCTAATACCAAGCTCGAAAGATAACTTGGCTGAAATGACA
EX746812       <-- ATGTATAGCTTCTAATACCAAGCTCGAAAGATAACTTGGCTGAAATGACA
FD980061       <-- ..................................................
EX751135       --> ATGTATAGCTTCTAATACCAAGCTCGAAAGATAACTTGGCTGAAATGACA
EX769099       --> ATGTATAGCTTCTAATACCAAGCTCGAAAAATAACTTGGCTGAAATAACA
FD555018       --> ATGTATAGCTTCTAATACCAAGCTCGAAAGATAACTTGGCTGAAATGACA
FD976011       --> ATGTATAGCTTCTAATACCAAGCTCGAAAGATAACTTGGCTGAAATGACA

               151    -    201
UN04770        --> AGAAGAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- AGAAGAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA
FD559287       <-- AGAAGAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA
EX765302       <-- AGAAGAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA
EV526923       <-- AGAAGAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA
EV551786       <-- AGAAGAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA
FD556545       <-- AGAAGAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA
EX746812       <-- AGAAGAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA
FD980061       <-- ..................................................
EX751135       --> AGAAGAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA
EX769099       --> AGAAAAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA
FD555018       --> AAAAAAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA
FD976011       --> AGAAGAAAAAAACTCAAGTTTCATAAACATTAATTAGTTTTAAGGGAAAA

               201    -    251
UN04770        --> CAGAAGGAAAAAAAAA-TCACGTTAATCGCCACCATTGTTTTGCCATCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- CAGAAGGAAAAAAAAA-TCACATTAATCGCCACCATTGTTTTGCCATCGA  Raphanus raphanistrum subsp. landra
FD559287       <-- CAGAAGGAAAAAAAAA-TCACATTAATCGCCACCATTGTTTTGCCATCGA  Raphanus raphanistrum subsp. landra
EX765302       <-- CAGAAGGAAAAAAAA--TCACGTTAATCGCCACCATTGTTTTGCCATCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526923       <-- CAGAAGGAAAAAAAAA-TCACGTTAATCGCCACCATTGTTTTGCCATCGA  Raphanus raphanistrum subsp. maritimus
EV551786       <-- CAGAAGGAAAAAAAA--TCACGTTAATCGCCACCATTGTTTTGCCATCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556545       <-- CAGAAGGAAAAAAAA--TCACATTAATCGCCACCATTGTTTTGCCATCGA  Raphanus raphanistrum subsp. landra
EX746812       <-- CAGAAGGAAAAAAAAAATCACGTTAATCGCCACCATTGTTTTGCCATCGA  Raphanus raphanistrum subsp. maritimus
FD980061       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX751135       --> CAGAAGGAAAAAAAAAATCACGTTAATCGCCACCATTGTTTTGCCATCGA  Raphanus raphanistrum subsp. maritimus
EX769099       --> CAGAAGGAAAAAAAA...................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555018       --> CAAAAGGAAAAAAAAA-TCACATTAATCCCCACCATTGTTTTGCCATCCA  Raphanus raphanistrum subsp. landra
FD976011       --> CAGAAGGAAAAAAAA--TCACGTTAATCGCCACCATTGTTTTGCCATCGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN04770        --> CCAACTAGTTTCATAGGTTTTTTTCCATTTCTCTCAAAATAAATTCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- CCAACTAGTTTCATAGGTTTTTTTCCATTTCTCTCAAAATAAATTCCATC
FD559287       <-- CCAACTAGTTTCATAGGTTTTTTTCCATTTCTCTCAAAATAAATTCCATC
EX765302       <-- CCAACTAGTTTCATAGGTTTTTTTCCATTTCTCTCAAAATAAATTCCATC
EV526923       <-- CCAACGAGTTTCATAGGTTTTTTTCCATTTCTCTCAAAATAAATTCCATC
EV551786       <-- CCAACTAGTTTCATAGGTTTTTTTCCATTTCTCTCAAAATAAATTCCATC
FD556545       <-- CCAACTAGTTTCATAGGTTTTTTTCCATTTCTCTCAAAATAAATTCCATC
EX746812       <-- CCAACTAGTTTCATAGGTTTTTTTCCATTTCTCTCAAAATAAATTCCATC
FD980061       <-- ..................................................
EX751135       --> CCAACTAGTTTCATAGGTTTTTTTCCATTTCTCTCAAAATAAATTCCATC
EX769099       --> ..................................................
FD555018       --> CCAACTAGTTTCATAGGTTTTTTTCCATTTCTCTCAAAATAAATTCCATC
FD976011       --> CCAACTAGTTTCATAGGTTTTTTTCCATTTCTCTCAAAATAAATTCCATC

               301    -    351
UN04770        --> GTTTTTAGCAATCCATGAGCGCAATCCATTTTTACATGGAGGTGTCGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- GTTTTTAGCAATCCATGAGCGAAATCCATTTTTACATGGAGGTGTCGGAG
FD559287       <-- GTTTTTAGCAATCCATGAGCGCAATCCATTTTTACATGGAGGTGTCGGAG
EX765302       <-- GTTTTTAGCAATCCATGAGCGCAATCCATTTTTACATGGAGGTGTCGGAG
EV526923       <-- GTTTTTAGCAATCCATGAGCGCAATCCATTTTTACATGGAGGTGTCGGAG
EV551786       <-- GTTTTTAGCAATCCATGAGCGCAATCCATTTTTACATGGAGGTGTCGGAG
FD556545       <-- GTTTTTAGCAATCCATGAGAGCAATCCATTTTTACATGGAGGTGTCGGAG
EX746812       <-- GTTTTTAGCAATCCATGAGCGCAATCCATTTTTACATGGAGGTGTCGGAG
FD980061       <-- ............................TTTTTACATGGAGGTGTCGGAG
EX751135       --> GTTTTTAGCAATCCATGAGCGCAATCCATTTTTACATGGAGGTGTCGGAG
EX769099       --> ..................................................
FD555018       --> GTTTTTAGCAATCCATGAGCGCAATCCATTTTTACATGGAGGTGTCGGAA
FD976011       --> GTTTT-AGCAATCCATGGGCGCAATCCATTTTTACATGGAGGTGTCGGAG

               351    -    401
UN04770        --> CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAGAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAGAATA
FD559287       <-- CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAGAATA
EX765302       <-- CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAGAATA
EV526923       <-- CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAGAATA
EV551786       <-- CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAGAATA
FD556545       <-- CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAGAATA
EX746812       <-- CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAGAATA
FD980061       <-- CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAGAATA
EX751135       --> CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAGAATA
EX769099       --> ..................................................
FD555018       --> CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAAAATA
FD976011       --> CTGATAATTCTACTACCAATGGATAAATATAAAGTCCTTTAAGCAGAATA

               401    -    451
UN04770        --> CAATTCCATTTTGGAACGTTCGCTCCGTCACGATTTACATATTTTTCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- CAATTCCATTTTGGAACGTTCGCTCCGTCACGATTTACATATTTTTCATT
FD559287       <-- CAATTCCATTTTGGAACGTTCGCTCCGTCACGATTTACATATTTTTCATT
EX765302       <-- CAATTCCATTT-GGAACGTTCGCTCCGTCACGATTTACATATTTTTCATT
EV526923       <-- CAATTCCATTTTGGAACGTTGGCTCCGTCACGATTTACATATTTTTCATT
EV551786       <-- CAATTCCATTTTGGAACGTTCGCTCCGTCACGATTTACATATTTTTCATT
FD556545       <-- CAATTCCATTTTGGAACGTTCGCTCCGTCACGATTTACATATTTTTCATT
EX746812       <-- CAATTCCATTTTGGAACGTTCGCTCCGTCACGATTTACATATTTTTCATT
FD980061       <-- CAATTCCATTTTGGAACGTTCGCTCCGTCACGATTTACATATTTTTCATT
EX751135       --> CAATTCCATTTTGGAACGTTCGCTCCGTCACGATTTACATATTTTTCATT
EX769099       --> ..................................................
FD555018       --> CAATTCCATTTTGGAACGTTCGCTCCGTCACGATTTACATATTTTTCATT
FD976011       --> CAATTCCATTTTGGAACGTTCGCTCCGTCACGATTTACATATTTTTCATT

               451    -    501
UN04770        --> AAATTTTAAGGTTCCATTTATAGGAAAAGTACGACCTCCTATATACTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- AAATTTTAAGGTTCCATTTATAGGAAAAGTAAGACCTCCTATATACTTAT  Raphanus raphanistrum subsp. landra
FD559287       <-- AAATTTTAAGGTTCCATTTATAGGAAAAGTACGACCTCCTATATACTTAT  Raphanus raphanistrum subsp. landra
EX765302       <-- AAATTTTAAGGTTCCTCTTATAGGAAAAGTACGACCTTCTTTATACTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526923       <-- AAATTTTAAGGTTCCATTTATAGGAAAAGTACGACCTCCTATATACTTAT  Raphanus raphanistrum subsp. maritimus
EV551786       <-- AAATTTTAAGGTTCCTCTTATAGGAAAAGTACGACCTTCTTTATACTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556545       <-- AAATTTTAAGGTTCCATTTATAGGAAAAGTACGACCTCCTATATACTTAT  Raphanus raphanistrum subsp. landra
EX746812       <-- AAATTTTAAGGTTCCATTTATAGGAAAAGTACGACCTCCTACATACTTAT  Raphanus raphanistrum subsp. maritimus
FD980061       <-- AAATTTTAAGGTTCCTCTTATAGAAAAAGTACGACCTTCTTTATACTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX751135       --> AAATTTTAAGGTTCCATTTATAGGAAAAGTACGACCTCCTACATACTTAT  Raphanus raphanistrum subsp. maritimus
EX769099       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555018       --> AAATTTTAAGGTTCCATTTATAGGAAAAGTACGACCTCCTATATACTTAT  Raphanus raphanistrum subsp. landra
FD976011       --> AAATTTTAAGGTTCCTCTTATAGAAAAAGTACGACCTTCTTTATACTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN04770        --> CACACATATATCCCAGATTCTGACCAGAACCGAGTTTGTTTTGAACTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- CACACATATATCCCAGATTCTGACCAGAACCGAGTTTGTTTTGAACTTCT
FD559287       <-- CACACATATATCCCAGATTCTGACCAGAACCGAGTTTGTTTTGAACTTCT
EX765302       <-- CACACATATATCCCAGATTCTGACCAGAACCGAGTTCGTTTTGAAATTCT
EV526923       <-- CACACATATATCCCAGATTCTGACCAGAACCGAGTTTGTTTTGAACTTCT
EV551786       <-- CACACATATATCCCAGATTCTGACCAGAACCGAGTTTGTTTTGAACTTCT
FD556545       <-- CACACATATATCCCAGATTCTGACCAGAACCGAGTTTGTTTTGAACTTCT
EX746812       <-- CACACATATATCCCAGATTCTGACCAGAACCGAGTTTGTTTTGAACTTCT
FD980061       <-- CACACATATATCCCAGATTCTGACTAGAACCGAGTTTGTTTTGAACTTCT
EX751135       --> CACACATATATCCCAGATTCTGACCAGAACCGAGTTTGTTTTGAACTTCT
EX769099       --> ..................................................
FD555018       --> CACACATATATCCCAAATTCTGA...........................
FD976011       --> CACACATATATCCCAGATTCTGACTAGAACCGAGTTTGTTTTGAACTTCT

               551    -    601
UN04770        --> ATCATGCCTATGTTGCAATTTTTTGTTGGTGGTAGCGCCTCACTCAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- ATCATGCCTATGTTGCAATTTTTTGTTGGTGGTAGCGCCTCACTCAATCC
FD559287       <-- ATCATGCCTATGTTGCAATTTTTTGTTGGTGGTAGCGCCTCACTCAATCC
EX765302       <-- ATCATGCCTATGTTGCAATTTTTTGTTGGTGGTAGCGCCTCACTCAATCC
EV526923       <-- ATCATGCCTATGTTGCAATTTTTTGTTGGTGGTAGCGCCTCACTCAATCC
EV551786       <-- ATCATGCCTATGTTGCAATTTTTTGTTGGTGGTAGCGCCTCACTCAATCC
FD556545       <-- ATCATGCCTATGTTGCAATTTTTTGTTGGTGGTAGCGCCTCACTCAATCC
EX746812       <-- ATCATGCCTATGTTGCAATTTTTTGTTGGTGGTAGCGCCTCACTCAATCC
FD980061       <-- ATCATGCCTATGTTGCAATTTTTTGTTGGTGGTAGCGCCTCACTCAATCC
EX751135       --> ATCATGCCTATGTTGCAATTTTTTGTTGGTGGTAGCGCCTCACTCAATCC
EX769099       --> ..................................................
FD555018       --> ..................................................
FD976011       --> ATCATGCCTATGTTGCAATTTTTTGTTGGTGGTAGCGCCTCACTCAATCC

               601    -    651
UN04770        --> AGCATACATAGCAGTAACTGATACAAAAAATATAAGATTCTTCATCATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557714       <-- AGCATACATAGCAGTAACTGATACAAAAAATATAAGATTCTTCATCATTT  Raphanus raphanistrum subsp. landra
FD559287       <-- AGCATACATAGCAGTAACTGATACAAAAAATATAAGATTCTTCATCATTT  Raphanus raphanistrum subsp. landra
EX765302       <-- AGCATACATAGCAGTAACTGATACAAAAAATATGAGATTCTTCATCATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526923       <-- AGCATACATAGCAGTAACTGATA...........................  Raphanus raphanistrum subsp. maritimus
EV551786       <-- AGCATACATAGCAGTAACTGATACAAAAAACATGAGATTCTTCATCATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556545       <-- AGCATACATAGCAGTAACTGATACAAAAA-TATAAGATTCTTCATCATTT  Raphanus raphanistrum subsp. landra
EX746812       <-- AGCATACATAGCAGTAACTGATACAAAAAATATAAGATTCTTCATCATTT  Raphanus raphanistrum subsp. maritimus
FD980061       <-- AGCATACATAGCAGTAACTGATACAAAAAATATGAGATTCTTCATCATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX751135       --> AGCATACATAGCAGTAACTGATACAAAAAATATAAGATTCTTCATCATTT  Raphanus raphanistrum subsp. maritimus
EX769099       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD555018       --> ..................................................  Raphanus raphanistrum subsp. landra
FD976011       --> AGCATACATAGCAGTAACTGATACAAAAAATATGAGATTCTTCATCATTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN04770        --> TTTTAAACCAAAAAAA
                   ~~~~~~~~~~~~~~~~
FD557714       <-- TTTTAAACCAAAAAAA
FD559287       <-- TTTTAAACCAAAAAAA
EX765302       <-- TTTTAAACCAAAAAAA
EV526923       <-- ................
EV551786       <-- TTTTAAACC.......
FD556545       <-- TTTTAAACCAAAAAAA
EX746812       <-- TTTTAAACC.......
FD980061       <-- TTTTAAACCAAAAAAA
EX751135       --> TTTTAAACCAAAAAAA
EX769099       --> ................
FD555018       --> ................
FD976011       --> TTTTAAACCAAAAAAA