1      -     51
UN04939        --> AGGTCAACATACAAAAAATGATTAACACCATTCTCAATATTTTTCTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- ..................................................
EY926234       <-- ..................................................
EY904472       <-- ..................................................
EY929916       --> AGGTCAACATACAAAAAATGATTAACACCATTCTCAATATTTTTCTTCCT
EV528651       --> ....gAACATACAAAAAATGATTAACACCACTCTCAATATTTTTCTTCCT
EY908843       --> ...ggAACATACAAAAAATGATTAACACCATTCTCAATATTTTTCTTCCT
EV536193       --> ......................TAACACCATTCTCAATATTTTTCTTCCT

               51     -    101
UN04939        --> CCTCTTACCATCATCTTTCTCTTCCTCTTGTACCCATCTTACCTTTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- ..................................................
EY926234       <-- ..................................................
EY904472       <-- ..................................................
EY929916       --> CCTCTTACCATCATCTTTCTCTTCCTCTTGTACCCATCTTACCTTTTGGG
EV528651       --> CCTCTTACCATCATCTTTCTCTTCCTCTTGTACCCATCTTACCTTTTGGG
EY908843       --> CCTCTTACCATCATTTTTCTCTTCCTCTTGTACCCATCTTACCTTTTGGG
EV536193       --> CCTCTTACCACCATCTTTCTCTTCCTCTTGTACTCATCTTACCTTTTGGG

               101    -    151
UN04939        --> CAAACTTGTGATTCGTCTCTATAAGCACCTGAGCTTTGAAAATGTGGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- ..................................................
EY926234       <-- ..................................................
EY904472       <-- ..................................................
EY929916       --> CAAACTTGTGATTCGTCTCTATAAGCACCTGAGCTTTGAAAATGTGGCCA
EV528651       --> CAAACTTGTGATTCGTCTCTATAAGCACCTGAGCTTTGAAAATGTGGCCA
EY908843       --> CAAACTTGTGATTCGTCTCTATAAGCACCTGAGCTTTGAAAATGTGGCCA
EV536193       --> CAAACTTGTGATTCGTCTCTATAAGCACCTGAGCTTTGAAAATGTGGCCA

               151    -    201
UN04939        --> GAAAAGTAGTTCTAATCACTGGAGCTTCCTCCGGCATTGGAGAGCATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- ..................................................
EY926234       <-- ..................................................
EY904472       <-- ..................................................
EY929916       --> GAAAAGTAGTTCTAATCACTGGAGCTTCCTCCGGCATTGGAGAGCATGTA
EV528651       --> GAAAAGTAGTTCTAATCACTGGAGCTTCCTCCGGCATTGGAGAGCATGTA
EY908843       --> GAAAAGTAGTTCTAATCACTGGAGCTTCCTCCGGCATTGGAGAGCATGTA
EV536193       --> GAAAAGTAGTTCTAGTCACTGGAGCTTCATCCGGCATTGGAGAGCATGTA

               201    -    251
UN04939        --> GCCTACGAGTATGCAAAGAAAGGAGCGTGTTTGGTTCTCGTTGCTCGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- ..........................GTGTTTGGTTCTCGTTGCTCGAAG
EY926234       <-- ..........................GTGTTTG-TTCTCGT-GCTCGAAG
EY904472       <-- ..................................................
EY929916       --> GCCTACGAGTATGCAAAGAAAGGAGCGTGTTTGGTTCTCGTTGCTCGAAG
EV528651       --> GCCTACGAGTATGCAAAGAAAGGAGCGTGTTTGGTTCTCGTTGCTCGAAG
EY908843       --> GCCTACGAGTATGCAAAGAAAGGAGCGTGTTTGGTTCTCGTTGCTCGAAG
EV536193       --> GCCTACGAGTATGCAAAGAAAGGAGCGTGTTTGGTTCTCGTTGCTCGAAG

               251    -    301
UN04939        --> AAGGGATCGTCTAGAGATAGTAGCCCAAAAATCACATCAATTAGGATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- AAGGGACCGTCTAGATATAGTAGCCCAAAAATTACATCAATTAGGATCTG
EY926234       <-- AAGGGATCGTCTAGAGATAGTAGCCCAAAAATCACATCAATTAGGATCTG
EY904472       <-- ..................................................
EY929916       --> AAGGGATCGTCTAGAGATAGTAGCCCAAAAATCACATCAATTAGGATCTG
EV528651       --> AAGGGATCGTCTAGAGATAGTAGCCCAAAAATCACATCAATTAGGATCTG
EY908843       --> AAGGGATCGTCTAGAGATAGTAGCCCAAAAATCACATCAATTAGGATCTG
EV536193       --> AAGGGACCGTCTAGATATAGTAGCCCAAAAATTACATCAATTAGGATCTG

               301    -    351
UN04939        --> GTGATGTCCTCGTCATACCTGGTGATGTTGCTAATATTAATGACTGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- GTGATGTCCTCGTCATACCTGGTGATGTTGCTAATATTAATGACTGCAAG
EY926234       <-- GTGATGTCCTCGTCATACCTGGTGATGTTGCTAATATTAATGACTGCAAG
EY904472       <-- ..................................................
EY929916       --> GTGATGTCCTCGTCATACCTGGTGATGTTGCTAATATTAATGACTGCAAG
EV528651       --> GTGATGTCCTCGTCATACCTGGTGATGTTGCTAATATTAATGACTGCAAG
EY908843       --> GTGATGTCCTCGTCATACCTGGTGACGTTGCTAATATTAATGACTGCAAG
EV536193       --> GTGATGTCCTCGTCATACCTGGTGATGTTGCTAATATTAATGACTGCAAG

               351    -    401
UN04939        --> AAGTTAATCGATGATACGATTCATCATTTCGGTAAAC----TAGACCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- AAGTTAATCGATGATACGATTCATCATTTCGGTAAAC----TAGACCACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926234       <-- AAGTTAATCGATGATACGATTCATAATTTCGGTAAACATAGTAGACCACT  Raphanus sativus var. oleiformis
EY904472       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929916       --> AAGTTAATCGATGATACGATTCATAATTTCGGTAAACATAGTAGACCACT  Raphanus sativus var. oleiformis
EV528651       --> AAGTTAATCGATGATACGATTCATAATTTCGGTAAAC----TAGACCACT  Raphanus raphanistrum subsp. maritimus
EY908843       --> AAGTTAATCGATGATACGATTCATCATTTCGGCAAAC----TAGACCACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536193       --> AAGTTAATCGATGATACGATTCATCATTTCGGTAAAC----TAGACCACT  Raphanus raphanistrum subsp. raphanistrum (MS)

               401    -    451
UN04939        --> TGATCAACAATGCTGGTGTATTTCAAACTATTCTTTTCGAAGATTTCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- TGATTAACAATGCTGGTGTATTTCAAACTATTCTTTTCGAAGATTTCACT
EY926234       <-- TGATCAACAATGCTGGTGTATTTCAAACTATTCTTTTCGAAGATTTCACT
EY904472       <-- ..................................................
EY929916       --> TGATCAACAATGCTGGTGTATTTCAAACTATTCTTTTCGAAGATTTCACT
EV528651       --> TGATCAACAATGCTGGTGTATTTCAAACTATTCTTTTCGAAGGTTTCACT
EY908843       --> TGATCAACAATGCTGGTGTATTTCAAACTATTCTTTTCGAAGATTTCACT
EV536193       --> TGATTAACAATGCTGGTGTATTTCAAACTATTCTTTTCGAAGATTTCACT

               451    -    501
UN04939        --> CAAATTCAAGACGCTAATCCTATTATGGATATTAACTTTTGGGGTTCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- CAAATTCAAGACGCTAATCCTATTATGGATATTAACTTTTGGGGTTCAAC
EY926234       <-- CAAATTCAAGACGCTAATCCTATTATGGATATTAACTTTTGGGGTTCAAC
EY904472       <-- ....................TATTATGGATATTAACTTTTGGGGTTCAAC
EY929916       --> CAAATTCAAGACGCTAATCCTATTATGGATATTAACTTTTGGGGTTCAAC
EV528651       --> CAAATTCAAGACGCTAATCCTATTATGGATATTAACTTTTGGGGTTCAAC
EY908843       --> CGAATTCAAGACGCTAATCCTATTATGGATATTAACTTTTGGGGTTCAAC
EV536193       --> CAAATTCAAGACGCTAATCCTATTATGGATATTAACTTTTGGGGTTCAAC

               501    -    551
UN04939        --> ATACATCACTTATTTTGCCATTCCTCATCTTCGAAAGAGCAAAGGAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- ATACATCACTTATTTTGCCATTCCTCATCTTCGAAAGAGCAAAGGAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926234       <-- ATACATCACTTATTTTGCCATTCCTCATCTTCGAAAGAGAAAAGGAAAGA  Raphanus sativus var. oleiformis
EY904472       <-- ATACATCACTTATTTTGCCATTCCTCATCTTCGAAAGAGCAAAGGAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929916       --> ATACATCACTTATTTTGCCATTCCTCATCTTCGAAAGAGAAAAGGAAAGA  Raphanus sativus var. oleiformis
EV528651       --> ATACATCACTTATTTTGCCATTCCTCATCTTCGAAAGAGAAAAGGAAAGA  Raphanus raphanistrum subsp. maritimus
EY908843       --> ATACATCACTTATTTTGCCATTCCTCATCTTCGAAAGAGCAAAGGAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536193       --> ATACATCACTTATTTTGCCATTCCTCATCTTCGAAAGAGCAAAGGAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN04939        --> TCATTGTGATTACTTCTGGTGCAGCAAATATACCCTTGCCATTGGCGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- TCATTGTGATTACTTCTGGTGCAGCAAATATACCCTTGCCATTGGCGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926234       <-- TCATTGTGATTACTTCTGGTGCAGCTAATATACCCTTGCCATTGGCGAGC  Raphanus sativus var. oleiformis
EY904472       <-- TCATTGTGATTACTTCTGGTGCAGCAAATATACCCTTGCCATTGGCGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929916       --> TCATTGTGATTACTTCTGGTGCAGCTAATATACCCTTGCCATTGGCGAGC  Raphanus sativus var. oleiformis
EV528651       --> TCATTGTGATTACTTCTGGTGC---TAATATACCCTTGCCATTGGCGAGC  Raphanus raphanistrum subsp. maritimus
EY908843       --> TCATTGTGATTACTTCTGGTGCAGCAAATATACCCTTGCCATTGGCGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536193       --> TCATTGTGATTACTTCTGGTGCAGCAAATATACCCTTGCCATTGGCGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN04939        --> GTCTATTCAGCAAGCAAAGCAGCTTTGGTAAGATTCTTTGAGACACTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- GTCTATTCAGCAAGCAAAGCAGCTTTGGTAAGATTCTTTGAGACACTAAG
EY926234       <-- GTCTATTCAGCAAGCAAAGCAGCTTTGGTAAGATTCTTTGAGACACTAAG
EY904472       <-- GTCTATTCAGCAAGCAAAGCAGCCTTGGTAAGATTCTTTGAGACACTAAG
EY929916       --> GTCTATTCAGCAAGCAAAGCAGCTTTGGTAAGATTCTTTGAGACACTAAG
EV528651       --> GTCTATTCAGCAAGCAAAGCAGCTTTGGTAAGATTCTTTGAGACACTAAG
EY908843       --> GTCTATTCAGCAAGCAAAGCAGCCTTGGTAAGATTCTTTGAGACACTAAG
EV536193       --> GTCTATTCAGCAAGCAAAGCAGCTTTGGTAAGATTCTTTGAGACACTAAG

               651    -    701
UN04939        --> AGTTGAGCTCAGTCCGGATATCAAAATAACAATCGTTTTCCCCGGAGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- AGTTGAGCTCAGTCCGGATATCAAAATAACAATCGTTTTCCCCGGAGTTA
EY926234       <-- AGTTGAGCTCAGTCCGGATATCAAAATAACAATCGTTTTCCCCGGAGTTA
EY904472       <-- AGTTGAGCTTAGTCCGGATATCAAAATAACAATCGTTTTCCCCGGAGTTA
EY929916       --> AGTTGAGCTCAGTCCGGATATCAAAATAACAATCGTTTTCCCCGGAGTTA
EV528651       --> AGTTGAGCTCAGTCCGGATATCAAAATAACAATCGTTTTCCCCGGAGTTA
EY908843       --> AGTTGAGCTTAGTCCGGATATCAAAATAACAATCGTTTTCCCCGGAGTTA
EV536193       --> AGTTGAGCTCAGTCCGGATATCAAAATAACAATCGTTTTCCCCGGAGTTA

               701    -    751
UN04939        --> TATCTACAGATATGACCACTCCTCACTTTGTAGAAAAGTATGGTTCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- TATCTACAGATATGACCACTCCTCACTTTGTAGAAAAGTATGGTTCAGAT
EY926234       <-- TATCTACAGATATGACCACTCCTCACTTTGTAGAAAAGTATGGTTCAGAT
EY904472       <-- TATCTACAGATATGACCACTCCTCACTTTGTAGAAAAGTATGGTTCAGAT
EY929916       --> TATCTACAGATATGACCACTCCTCACTTTGTAGAAA-GTATGGTTCAGA.
EV528651       --> TATCTACAGATATGACCACTCCTCACTTTGTAGAAAAGTATGGTTCAGAT
EY908843       --> TATCTACAGATATGACCACTCCTCACTTTGTAGAAAAGTATGGTTCAGAT
EV536193       --> TATCTACAGATATGACCACTCCTCACTTTGTAGAAAAGTATGGTTCAGA.

               751    -    801
UN04939        --> TTTTTCCTCTCGGAATCAGTGACTAAATGTGCAAAAGCAATCTTCAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- TTTTTCCTCTCGGAATCAGTGACTAAATGTGCAAAAGCAATCTTCAGAGG
EY926234       <-- TTTTTCCTCTCGGAATCAGTGACTAAATGTGCAAAAGCAATCTTCAGAGG
EY904472       <-- TTTTTCCTCTCGGAATCAGTGACTAAATGTGCAAAAGCAATCTTCAGAGG
EY929916       --> ..................................................
EV528651       --> TTTTTCCTCTCGGAATCAGTGACTAAATGTGCAAAAGCAATCTT......
EY908843       --> T.................................................
EV536193       --> ..................................................

               801    -    851
UN04939        --> AATCGCTAGAGGAGAGACATACATAGAAGAGCCATCTTGGTTAAAATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- AATCGCTAGAGGAGAGACATACATAGAAGAGCCACCTTGGTTAAAATGGA
EY926234       <-- AATCGCTAGAGGAGAGACGTACATAGAAGAGCCATCTTGGTTAAAATGGA
EY904472       <-- AATCGCTAGAGGAGAGACATACATAGAAGAGCCATCTTGGTTAAAATGGA
EY929916       --> ..................................................
EV528651       --> ..................................................
EY908843       --> ..................................................
EV536193       --> ..................................................

               851    -    901
UN04939        --> TGTTTTTGATAAACAGTGTGACTCCTGAAATGTTTGACTACTTAGTCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- TGTTTTTGATAAACAGTGTGACTCCTGAAATGTTTGACTACTTAGTCAAC
EY926234       <-- TGTTTTTGATAAACAGTGTGACTCCTGAAATGTTTGACTACTTAGTCAAC
EY904472       <-- TGTTTTTGATAAACAGTGTGACTCCTGAAATGTTTGACTACTTAGTCAAC
EY929916       --> ..................................................
EV528651       --> ..................................................
EY908843       --> ..................................................
EV536193       --> ..................................................

               901    -    951
UN04939        --> TATTTATTTTTTCGTTATCTCAAACCTTATTTCAAGCGTGATTGATCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- TATTTATTTTTTCGTTATCTCAAACCTTATTTCAAGCGTGATTGATCGTA
EY926234       <-- TATTTATTTTTTCGTTATCTCAAACCTTATTTCAAGCGTGATTGATCGTA
EY904472       <-- TATTTATTTTTTCGTTATCTCAAACCTTATTTCAAGCGTGATTGATCGTA
EY929916       --> ..................................................
EV528651       --> ..................................................
EY908843       --> ..................................................
EV536193       --> ..................................................

               951    -   1001
UN04939        --> TTCGTATCAGCCCATTGCTATAATACTCTTGAAAATGGTTGTATTTCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- TTCGTATCAGCCCATTGCTATAATACTCTTGAAAATGGTTGTATTTCAAC
EY926234       <-- TTCGTATCAGCCCATTGCTATAATACTCTTGAAAATGGTTGTATTTCAAC
EY904472       <-- TTCGTATCAGCCCATTGCTATAATACTCTTCAAAATGGTTGTATTTCAAC
EY929916       --> ..................................................
EV528651       --> ..................................................
EY908843       --> ..................................................
EV536193       --> ..................................................

               1001   -   1051
UN04939        --> GGGAAATGAAACTGAACGATACTTTGTTTTTCGTTAGCTAATTATTATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- GGGAAATGAAACTGAACGATACTTTGTTTTTCG.................
EY926234       <-- GGGAAATGAAACTGAACGATACTT-GTTTTCCATTAGCTAATTATTgcaa
EY904472       <-- GGGAAATGAAACTGAACGATACTTTGTTTTTCGTTAGCTAATTATTATTA
EY929916       --> ..................................................
EV528651       --> ..................................................
EY908843       --> ..................................................
EV536193       --> ..................................................

               1051   -   1101
UN04939        --> TTTTTTTTTTTTTTTTTAAGATCATTCATTAGCTAATTATTGCAACCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- ..................................................
EY926234       <-- ccaagtctattactcttttgaaagc.........................
EY904472       <-- TTTTTTTTTTTTTTTTTAAGATCATTCATTAGCTAATTATTGCAACCAAG
EY929916       --> ..................................................
EV528651       --> ..................................................
EY908843       --> ..................................................
EV536193       --> ..................................................

               1101   -   1151
UN04939        --> TCTATTAGTTATTACTCTTTTATATTTGTTCCAGTTTTCTTCTAGCTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- ..................................................
EY926234       <-- ..................................................
EY904472       <-- TCTATTAGTTATTACTCTTTTATATTTGTTCCAGTTTTCTTCTAGCTAGA
EY929916       --> ..................................................
EV528651       --> ..................................................
EY908843       --> ..................................................
EV536193       --> ..................................................

               1151   -   1201
UN04939        --> GTTTAAGGTATTACACATGACACGATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540704       <-- ............................
EY926234       <-- ............................
EY904472       <-- GTTTAAGGTATTACACATGACACGATCG
EY929916       --> ............................
EV528651       --> ............................
EY908843       --> ............................
EV536193       --> ............................