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Alignment for radish unigene UN05660

               1      -     51
UN05660        --> GGAAGTTTGTTATTCCTTCCCCCGATTCCCCGCATTTAAACGAGGTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- ..................................................
EV574096       <-- ..................................................
EW721640       <-- ..................................................
FD945363       <-- ..................................................
EV528024       --> GGAAGTTTGTTATTCCTTCCCCCGATTCCCCGCATTTAAACGAGGTGAAA
EW718059       --> GGAAGTTTGTTATTCCTTCCCCCGATTCCCCGCATTTAAACGAGGTGAAA
FD963947       --> ..................................................
EY916781       --> ..................................................
FD949757       --> ..................................................
EV569584       --> ..................................................
EV569114       --> ..................................................

               51     -    101
UN05660        --> ACCATAACCGATTCCGATCGAGAAGTTTTTTTT--CTCTTGAGATCGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- ...............................................AAT
EV574096       <-- ...............................................AAT
EW721640       <-- ..................................................
FD945363       <-- ..................................................
EV528024       --> ACCATAACCGATTCCGATCGAGAAGTTTTTTTT--CTCTTGAGATCGAAT
EW718059       --> ACCATAACCGATTCCGATCGAGAAGTTTTTTTTTTCTCTTGAGATCGAAT
FD963947       --> ...................................CTCTTGAGATCGAGT
EY916781       --> ........................................GAGATCGAAT
FD949757       --> ........................................GAGATCGAAT
EV569584       --> ...............................................AAT
EV569114       --> ..................................................

               101    -    151
UN05660        --> CGGCATGACGAATCCCGACAAACAGAATCCGGTCGAAGCTCCCGACGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- CGGCATGACGAATCCCGACAAACAGAATCCGGTCGAAGCTCCCGACGTCG
EV574096       <-- CGGCATGACGAATCCCGACAAACAGAATCCGGTCGAAGCTCCCGACGTCG
EW721640       <-- ..............................................GTCG
FD945363       <-- ..............................................GTCG
EV528024       --> CGGCATGACGAATCCCGACAAACAGAATCCGGTCGAAGCTCCCGACGT-G
EW718059       --> CGGCATGACGAATCCCGACAAACAGAATCCGGTCGAAGCTCCCGACGTCG
FD963947       --> CGGCATGACGAATCCCGACAAACAGAATCCGGTCGAAGCTCCCGACGTCG
EY916781       --> CGGCATGACGAATCCCGACAAACAGAATCCGGTCGAAGCTCCCGACGTCG
FD949757       --> CGGCATGACGAATCCCGACAAACAGAATCCGGTCGAAGCTCCCGACGTCG
EV569584       --> CGGCATGACGAATCCCGACAAACAGAATCCGGTCGAAGCTCCCGACGTCG
EV569114       --> ...................AAACAGAATCCGGTCGAAGCTCCCGACGTCG

               151    -    201
UN05660        --> AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGATCCGGAACGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGATCCGGAACGTCA  Raphanus raphanistrum subsp. landra
EV574096       <-- AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGATCCGGAACGTCA  Raphanus raphanistrum subsp. landra
EW721640       <-- AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGGTCCGGAACGTCG  Raphanus sativus var. oleiformis
FD945363       <-- AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGATCCGGAACGTCG  Raphanus sativus cv Early Scarlet Globe
EV528024       --> AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGATCCGGAACGTCG  Raphanus raphanistrum subsp. maritimus
EW718059       --> AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGGTCCGGAACGTCG  Raphanus sativus var. oleiformis
FD963947       --> AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGATCCGGAACGTCG  Raphanus raphanistrum subsp. maritimus
EY916781       --> AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGATCCGGAACGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949757       --> AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGATCCGGAACGTCG  Raphanus sativus cv Early Scarlet Globe
EV569584       --> AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGATCCGGAACGTCA  Raphanus raphanistrum subsp. landra
EV569114       --> AGGCAGCGCCGGCGGCGAAGACGGAGACGACGCAGGGATCCGGAACGTCA  Raphanus raphanistrum subsp. landra

               201    -    251
UN05660        --> TCGTTTTCTGCGATTACTCAGAGATGGAAGAGGGAGGATTTGGTAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- TCGTTTTCTGCGATTACTCAGAGATGGAAGAGGGAGGATTTGGTAAAGAA
EV574096       <-- TCGTTTTCTGCGATTACTCAGAGATGGAAGAGGGAGGATTTGGTAAAGAA
EW721640       <-- TCGTTTTCTGCGATTACTCAGATATGGAAGAGGGAGGATTTGGTAAAGAA
FD945363       <-- TCGTTTTCTGCGATTACTCAGAGATGGAAGAGGGAGGATTTGGTAAAGAA
EV528024       --> TCGTTTTCTGCGATTACTCAGAGATGGAAGAGGGAGGATTTGGTAAAGAA
EW718059       --> TCGTTTTCTGCGATTACTCAGATATGGAAGAGGGAGGATTTGGTAAAGAA
FD963947       --> TCGTTTTCTGCGATTACTCAGAGATGGAAGAGGGAGGATTTGGTAAAGAA
EY916781       --> TCGTTTTCTGCGATTACTCAGAGATGGAAGAGGGAGGATTTGGTAAAGAA
FD949757       --> TCGTTTTCTGCGATTACTCAGAGATGGAAGAGGGAGGATTTGGTAAAGAA
EV569584       --> TCGTTTTCTGCGATTACTCAGAGATGGAAGAGGGAGGATTTGGTAAAGAA
EV569114       --> TCGTTTTCTGCGATTACTCAGAGATGGAAGAGGGAGGATTTGGTAAAGAA

               251    -    301
UN05660        --> AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGTTCTCTCTCCTCGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGTTCTCTCTCCTCGCTT
EV574096       <-- AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGTTCTCTCTCCTCGCTT
EW721640       <-- AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGTTCTCTCTCCTCGCTT
FD945363       <-- AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGCTCTCTCTCCTCGCTT
EV528024       --> AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGTTCTCTCTCCTCGCTT
EW718059       --> AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGTTCTCTCTCCTCGCTT
FD963947       --> AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGTTCTCTCTCCTCGCTT
EY916781       --> AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGTTCTCTCTCCTCGCTT
FD949757       --> AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGCTCTCTCTCCTCGCTT
EV569584       --> AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGTTCTCTCTCCTCGCTT
EV569114       --> AGCGTCTCCGATCGCGAGAGGGTTGTGTCTTCTGTTCTCTCTCCTCGCTT

               301    -    351
UN05660        --> TCATCATCATGGTCTCTAACAAACATGGATACGGTAGAAACTTCGACGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- TCATCATCATGGTCTCTAACTAACATGGATACGGTAGAAACTTCGACGAC  Raphanus raphanistrum subsp. landra
EV574096       <-- TCATCATCATGGTCTCTAACTAACATGGATACGGTAGAAACTTCGACGAC  Raphanus raphanistrum subsp. landra
EW721640       <-- TCATCATCATGGTCTCTAACAAACATGGATACGGTAGAAACTTCGACGAC  Raphanus sativus var. oleiformis
FD945363       <-- TCATCATCATGGTCTCTAACAAACATGGATACGGTAGAAACTTCGACGAC  Raphanus sativus cv Early Scarlet Globe
EV528024       --> TCATCATCATGGTCTCTAACAAACATGGATACGGTAGAAACTTCGACGAC  Raphanus raphanistrum subsp. maritimus
EW718059       --> TCATCATCATGGTCTCTAACAAACATGGATACGGTAGAAACTTCGACGAC  Raphanus sativus var. oleiformis
FD963947       --> TCATCATCATGGTCTCTAACAAACATGGATACGGTAGAAACTTCGACGAC  Raphanus raphanistrum subsp. maritimus
EY916781       --> TCATCATCATGGTCTCTAACAAACATGGATACGGTAGAAACTTCGACGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949757       --> TCATCATCATGGTCTCTAACAAACATGGATACGGTAGAAACTTCGACGAC  Raphanus sativus cv Early Scarlet Globe
EV569584       --> TCATCATCATGGTCTCTAACTAACATGGATACGGTAGAAACTTCGACGAC  Raphanus raphanistrum subsp. landra
EV569114       --> TCATCATCATGGTCTCTAACTAACATGGATACGGTAGAAACTTCGACGAC  Raphanus raphanistrum subsp. landra

               351    -    401
UN05660        --> TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTA
EV574096       <-- TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTA
EW721640       <-- TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTA
FD945363       <-- TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTA
EV528024       --> TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTC-TCGGTGTA
EW718059       --> TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTA
FD963947       --> TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTA
EY916781       --> TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTA
FD949757       --> TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTA
EV569584       --> TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTA
EV569114       --> TACGAAGAGTACAAATATGTTTTAGCTATTGCGATCATCTCGACGGTGTA

               401    -    451
UN05660        --> CACAGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- CACAGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC
EV574096       <-- CACAGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC
EW721640       <-- CACTGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC
FD945363       <-- CACAGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC
EV528024       --> CACTGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC
EW718059       --> CACTGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC
FD963947       --> CACAGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC
EY916781       --> CACAGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC
FD949757       --> CACAGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC
EV569584       --> CACAGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC
EV569114       --> CACAGCGTGGCAAACGTTTGTACATCTCTCGAAGAGAGAGTTCTTTGATC

               451    -    501
UN05660        --> GCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- GCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTAT
EV574096       <-- GCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTAT
EW721640       <-- GCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTAT
FD945363       <-- GCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTAT
EV528024       --> GCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTAT
EW718059       --> GCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTAT
FD963947       --> GCCGGACTTCCATGTTGGTCGATTTTTCCTGTGATCAGATTGTGGCTTAT
EY916781       --> GCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTAT
FD949757       --> GCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTAT
EV569584       --> GCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTAT
EV569114       --> GCCGGACTTCCATGTTGGTCGATTTTTCCGGTGATCAGATTGTGGCTTAT

               501    -    551
UN05660        --> CTTCTCATATCAGCTGCATCGTCTGCGATACCATTGACCAACAGATTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- CTTCTCATATCAGCTGCATCGTCTGCGATACCATTGACCAACAGATTCAT  Raphanus raphanistrum subsp. landra
EV574096       <-- CTTCTCATATCAGCTGCATCGTCTGCGATACCATTGACCAACAGATTCAT  Raphanus raphanistrum subsp. landra
EW721640       <-- CTTCTCATATCAGCTGCATCGTTTGCGATACCATTGACCAACAGATTCAG  Raphanus sativus var. oleiformis
FD945363       <-- CTTCTCATATCAGCTGCATCGTCTGCGATACCATTGACCAACAGATTCAG  Raphanus sativus cv Early Scarlet Globe
EV528024       --> CTTCTCATATCAGCTGCATCGTCTGCGA--CCATTGACCAACAGATTCAG  Raphanus raphanistrum subsp. maritimus
EW718059       --> CTTCTCATATCAGCTGCATCGTCTGCGATACCATTGACCAACAGATTCAG  Raphanus sativus var. oleiformis
FD963947       --> CTTCTCATATCAGCTGCATCGTCTGCGATACCATTGACCAACAGATTCAG  Raphanus raphanistrum subsp. maritimus
EY916781       --> CTTCTCATATCAGCTGCATCGTCTGCGATACCATTGACCAACAGATTCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949757       --> CTTCTCATATCAGCTGCATCGTCTGCGATACCATTGACCAACAGATTCAG  Raphanus sativus cv Early Scarlet Globe
EV569584       --> CTTCTCATATCAGCTGCATCGTCTGCGATACCATTGACCAACAGATTCAT  Raphanus raphanistrum subsp. landra
EV569114       --> CTTCTCATATCAGCTGCATCGTCTGCGATACCATTGACCAACAGATTCAT  Raphanus raphanistrum subsp. landra

               551    -    601
UN05660        --> AGAAGGTCAAGATAACATATTCACTGATTCTGCTGCTTCAGCAATCAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- AGAAGGTCAAGATAACATATTCACTGATTCTGCTGCTTCAGCAATCAGCA
EV574096       <-- AGAAGGTCAAGATAACATATTCACTGATTCTGCTGCTTCAGCAATCAGCA
EW721640       <-- AGAAGGTCAAGATAACATATTCACTGATTCTGCTTCTTCAGCAATCAGCA
FD945363       <-- AGAAGGTCAAGATAACATATTCACTGATTCTGCTGCTTCAGCAATCAGCA
EV528024       --> AGAAGGTCAAGATAACATATTCACTGATTCTGCTGCTTCAGCAATCAGCA
EW718059       --> AGAAGGTCAAGATAACATATTCACTGATTCTGCTTCTTCAGCAATCAGCA
FD963947       --> AGAAGGTCAAGATAACATATTCACTGATTCTGCTGCTTCAGCAATCAGCA
EY916781       --> AGAAGGTCAAGATAACATATTCACTGATTCTGCTGCTTCAGCAATCAGCA
FD949757       --> AGAAGGTCAAGATAACATATTCACTGATTCTGCTGCTTCAGCAATCAGCA
EV569584       --> AGAAGGTCAAGATAACATATTCACTGATTCTGCTGCTTCAGCAATCAGCA
EV569114       --> AGAAGGTCAAGATAACATATTCACTGATTCTGCTGCTTCAGCAATCAGCA

               601    -    651
UN05660        --> TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT
EV574096       <-- TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT
EW721640       <-- TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT
FD945363       <-- TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT
EV528024       --> TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT
EW718059       --> TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT
FD963947       --> TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT
EY916781       --> TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT
FD949757       --> TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT
EV569584       --> TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT
EV569114       --> TGACTGTCTTCGCCTTCGTCTCTCTAGCTCTCTCTGGTCTCTTCTCCGGT

               651    -    701
UN05660        --> TACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTATAAACCTAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- TACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTATAAACCTAATC
EV574096       <-- TACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTATAAACCTAATC
EW721640       <-- TACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTATAAACCTAATC
FD945363       <-- TACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTATAAACCTAATC
EV528024       --> TACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTATAAACCTAATT
EW718059       --> TACAA-CTCTCCACTCATTCTTT-ATCTGAATCTGGTTATAAACCTAATC
FD963947       --> TACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTATAAACCTAATC
EY916781       --> TACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTATAAACCTAATC
FD949757       --> TACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTATAAACCTAATC
EV569584       --> TACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTATAAACCTAATC
EV569114       --> TACAAACTCTCCACTCATTCTTTTATCTGAATCTGGTTATAAACCTAATC

               701    -    751
UN05660        --> ATGTGCTTTTCAATCGTTTATTTTATACCGTGTTGATGTTTGAGAGACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- ATTTGCTTTTCAATCGTTTATTTTATACCGTGTTGATGCTTGAGAGACAC  Raphanus raphanistrum subsp. landra
EV574096       <-- ATTTGCTTTTCAATCGTTTATTTTATACCGTGTTGATGCTTGAGAGACAC  Raphanus raphanistrum subsp. landra
EW721640       <-- ATGTGCTTTTCAATCGTTTATTTTATACCGTGTTGATGTTTGAGAGACAC  Raphanus sativus var. oleiformis
FD945363       <-- ATGTGCTTTTCAATCGTTTATTTTATACCGTGTTGATGTTTGAGAGACAC  Raphanus sativus cv Early Scarlet Globe
EV528024       --> ATGTGCTTTTCAATCGTTTATTTTATACCGTGTTGATGTTTGAGAGATCC  Raphanus raphanistrum subsp. maritimus
EW718059       --> ATGTGCTTT-CA-TCGTT-ATTT-ATACCGTGTTGATGTTTGAGAGACAC  Raphanus sativus var. oleiformis
FD963947       --> ATGTGCTTTTCAAT....................................  Raphanus raphanistrum subsp. maritimus
EY916781       --> ATGTGCTTTTCAATCGTTTATTTTATAC......................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949757       --> ATGTGCTTTTCAATCGTTTATTTTATACCGTGTTGAT.............  Raphanus sativus cv Early Scarlet Globe
EV569584       --> ATTTGCTTTTCAATCGTTTATTTTATACCGTGTTGATGCTTGAGAGACAC  Raphanus raphanistrum subsp. landra
EV569114       --> ATTTGCTTTTCAATCGTTTATTTTATACCGTGTTGATGCTTGAGAGACAC  Raphanus raphanistrum subsp. landra

               751    -    801
UN05660        --> GTGTAAAATGTCATTCATTCTTTAACTTCCTGTTATGTTGGATCTGTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- GTGTAAAATGTCATTCATTCTTTAACTTCCTGTTATGTTGGATCTGTGAC
EV574096       <-- GTGTAAAATGTCATTCATTCTTTAACTTCCTGTTATGTTGGATCTGTGAC
EW721640       <-- GTGTAAAATGTCATTCATTCTTTAACTTCCTGTTATGTTGGATCTGTGAC
FD945363       <-- GTGTAAAATGTCATTCATTCTTTAACTTCCTGTTATGTTGGATCTGTGAC
EV528024       --> GTGTAAAATGTCATTCATTCTTTAACTTCCTGTTATGTTGGATCTGTGAC
EW718059       --> GTGTAAA-TGTCAT-CATTCTT--ACTTC-TGT-ATGT-GGATCTGTGAC
FD963947       --> ..................................................
EY916781       --> ..................................................
FD949757       --> ..................................................
EV569584       --> GTGTAAAATGTCATTCATTCTTTAACTTCCTGTTATGTTGGATCTGTGAC
EV569114       --> GTGTAAAATGTCATTCATTCTTTAACTTCCTGTTATGTTGGATCTGTGAC

               801    -    851
UN05660        --> TGTTTGATGATACATTGTACGAAGTGAAAACATTGATTGGCTTAATATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- TGTTTGATGATACATTGTACGAAGTGAAAACATTGATTGGCTTAATATCA
EV574096       <-- TGTTTGATGATACATTGTACGAAGTGAAAACATTGATTGGCTTAATATCA
EW721640       <-- TGTTTGATGATACATTGTACGAAGTGAAAACATTGATTGGCTTAATATCA
FD945363       <-- TGTTTGATGATACATTGTACGAAGTGAAAACATTGATTGGCTTAATATCA
EV528024       --> TGTTTGATGATACATTGTA...............................
EW718059       --> TGTT-GATGATACATTGTAC..............................
FD963947       --> ..................................................
EY916781       --> ..................................................
FD949757       --> ..................................................
EV569584       --> TGTTTGATGATACATTGTACGAAGTGAAAACATTGATTGGCTTAATATCA
EV569114       --> TGTTTGATGATACATTGTACGAAGTGAAAACATTGATTGGCTTAATATCA

               851    -    901
UN05660        --> TTTTT-CTATTTCTATGGTGC.
                   ~~~~~~~~~~~~~~~~~~~~~~
EV573705       <-- TTTTT-CTATTTCTATGGTGC.
EV574096       <-- TTTTT-CTATTTCTATGGTGC.
EW721640       <-- TTTTT-CTATTTCTATGGTaag
FD945363       <-- TTTTT-CTATTTCTATGGc...
EV528024       --> ......................
EW718059       --> ......................
FD963947       --> ......................
EY916781       --> ......................
FD949757       --> ......................
EV569584       --> TTTTT-CTATTTCTATGGTGC.
EV569114       --> TTTTTTCTATTTCTATGGTGC.