Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN05665

               1      -     51
UN05665        --> CAACATAAATTTTCGTACTATGAAAACTTGGAATCTGAAGAAGGGGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- CAACATAAATTTTCGTACTATGAAAACTTGGAATCTGAAGAAGGGGAAAT
EX765629       <-- ...................................tggAGAAGGGGAAAT
EX903038       <-- ....................................gtAGAAAGGGAAAT
FY441180       <-- ......................................ctAAGGGGAAAT
FY442923       <-- ........................................AAGGGGAAAT
FY442161       <-- ..................................................
EY947390       <-- ..................................................
FD978800       <-- ..................................................
FD577373       <-- ..................................................
EY943998       --> CAACATAAATTTTCGTACTATGAAAACTTGGAATCTGAAAAAGGGGAAAT
EX907179       --> ....................................gtAGAAAGGGAAAT
FD974976       --> ........................................AAGGGGAAAT
FD581684       --> ..................................................

               51     -    101
UN05665        --> TTAAAAACTTCAACTACTCAATCCAAAGGTTTCACAATTAATGTGATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- TTAAAAACTTCAACTACTCAATCCAAAGGTTTCACAATTAATGTGATCTC
EX765629       <-- TTAAAAACTTCAACTACTCAATCCAAAGGTTTCACAATTAATGTGATCTC
EX903038       <-- TTAAAAACTTCAACTACTCAATCCAAAGGTTTCACAATTAATGTGATCTC
FY441180       <-- TTAAAAACTTCAACTACTCAATCCAAAGGTTTCACAATTAATGTGATCTC
FY442923       <-- TTAAAAACTTCAACTACTCAATCCAAAGGTTTCACAATTAATGTGATCTC
FY442161       <-- ......ACTTCAACTACTCAATCCAAAGGTTTCACAATTAATGTGATCTC
EY947390       <-- .......CTTCAACTACTCAATCCAAAGGTTTCACAATTAATGTGATCTC
FD978800       <-- ..................................................
FD577373       <-- ..................................................
EY943998       --> TTAAAAACTTCAACTACTCAATCCAAAGGTTTCACAATTAATGTGATCTC
EX907179       --> TTAAAAACTTCAACTACTCAATCCAAAGGTTTCACAATTAATGTGATCTC
FD974976       --> TTAAAAACTTCAACTACTCAATCCAAAGGTTTCACAATTAATGTGATCTC
FD581684       --> .............................................ATCTC

               101    -    151
UN05665        --> AAGTAAAATTTGAAACAAAGGGGAAAGTATTAGATTCATAATCTGTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- AAGTAAAATTTGAAACAAAGGGGAAAGTATTAGATCCATAATCTGTTGTT
EX765629       <-- AAGTAAAATTTGAAACAAAGGGGAAAGTATTAGATTCATAATCTGCTGTT
EX903038       <-- AAGTAGAATTTGAAACAAAGGGGAAAGTATTAGATTCATAATCTGTTGTT
FY441180       <-- AAGTAAAATTCGAAACAAAGGGGAAAGTAATAGATTCATAATCTGTTGTT
FY442923       <-- AAGTAAAATTCGAAACAAAGGGGAAAGTAATAGATTCATAATCTGTTGTT
FY442161       <-- AAGTAAAATTCGAAACAAAGGGGAAAGTAATAGATTCATAATCTGTTGTT
EY947390       <-- AAGTAAAATTTGAAACAAAGGGGAAAGTATTAGATTCATAATCTGTTGTT
FD978800       <-- ................................................TT
FD577373       <-- ..................................................
EY943998       --> AAGTAAAATTTGAAACAAAGGGGAAAGTATTAAATCCATAATCTGTTGTT
EX907179       --> AAGTAGAATTTGAAACAAAGGGGAAAGTATTAGATTCATAATCTGTTGTT
FD974976       --> AAGTAAAATTTGAAACAAAGGGGAAAGTATTAGATTCATAATCTGTTGTT
FD581684       --> AAGTAAAATTTGAAACAAAGGGGAAAGTATTAAATTCATAATCTGTTGTT

               151    -    201
UN05665        --> CAAAAAAGGGAGGCAGAGAAACATCGTCCAATAAGTTAAATCACTTGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- CAAAAAAGAGAGGCAGAGAAACATCGTCCAATAAGTTAAATCACTTGGTC
EX765629       <-- CAAAAAAGGGAGGCAGAGAAACATCGTCCAATAAGTTAAATCACTTCGTC
EX903038       <-- CAAAAAAGGGAGGCAGAGAAACATCGTCCAATAAGTTAAATCACTTGGTC
FY441180       <-- CAAAAA-GGGAGGCAGAGAAACATCGTCCAATAAGTTAAATCACTTGGTC
FY442923       <-- CAAAAA-GGGAGGCAGAGAAACATCGTCCAATAAGTTAAATCACTTGGTC
FY442161       <-- CAAAAA-GGGAGGCAGAGAAACATCGTCCAATAAGTTAAATCACTTGGTC
EY947390       <-- CAAAAAAGGGAGGCAGAGAAACATCGTCCAATAAGTTAAATCACTTGGTC
FD978800       <-- CAAAAAAGGGAGGCAGAGAAACGTCGTCCAATAAGTTAAATCACTTCGTC
FD577373       <-- ..................................................
EY943998       --> CAAAAAAGGGAGGCAAAAAAACATCGTCCAATAAGTTAAATCACTTGGTC
EX907179       --> CAAAAAAGGGAGGCAGAAAAACATCGTCCAATAAGTTAAATCACTTGGTC
FD974976       --> CAAAAAAGGGAGGCAGAGAAACGTCGTCCAATAAGTTAAATCACTTCGTC
FD581684       --> CAAAAAAGGGAGGCAGAAAAACATCGTCCAATAAGTTAAATCACTTGGTC

               201    -    251
UN05665        --> TTCTCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- TTCTCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAGAAT
EX765629       <-- TTGTCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAGAAT
EX903038       <-- TTCTCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAGAAT
FY441180       <-- TTCTCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAGAAT
FY442923       <-- TTCTCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAGAAT
FY442161       <-- TTCTCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAGAAT
EY947390       <-- TTCTCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAGAAT
FD978800       <-- TTGCCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAGAAT
FD577373       <-- ..................................................
EY943998       --> TTCTCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAAAAT
EX907179       --> TTCTCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAGAAT
FD974976       --> TTGCCTGTTGTTTCACCATCTTCATTTGCAGCTGAAGATTCCTTTAGAAT
FD581684       --> TTCTCCGTTGT.......................................

               251    -    301
UN05665        --> ATGTGCACCAAGTCATAAGCAAATGTCCAGAACAGCACAAAAGACATAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- ATGTGCACCAAGTCATAAGCAAATGTCCAGAACAGCACAAAAGACATAAG
EX765629       <-- ATGTGCACCAAGTCATAAGCAAATGTCCAGAATAGCACAAAAGACATAAG
EX903038       <-- ATGTGCACCAAGTCATAAGCAAATGTCCAGAACAGCACAAAAGACATAAG
FY441180       <-- ATGTGCACCAAGTCATAAGCAAATGTCCAGAACAGCACAAAAGACATAAG
FY442923       <-- ATGTGCACCAAGTCATAAGCAAATGTCCAGAACAGCACAAAAGACATAAG
FY442161       <-- ATGTGCACCAAGTCATAAGCAAATGTCCAGAACAGCACAAAAGACATAAG
EY947390       <-- ATGTGCACCAAGTCATAAGCAAATGTCCAGAACAGCACAAAAGACATAAG
FD978800       <-- ATGTGCACCAAGTCATAAGCAAATGTCCAGAATAGCACAAAAGACATAAG
FD577373       <-- ..................................................
EY943998       --> ATGTGCACCAAGTCATAAGCAAATGTCCAGAACAGCACAAAAGACATAAG
EX907179       --> ATGTGCACCAAGTCATAAGCAAATGTCCAGAACAGCACAAAAGACATAAG
FD974976       --> ATGTGCACCAAGTCATAAGCAAATGTCCAGAATAGCACAAAAGACATAAG
FD581684       --> ..................................................

               301    -    351
UN05665        --> ACCACCAAGAAAGCCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- ACCACCAAGAAAACCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA  Raphanus sativus cv Rat-Tail Radish #3870
EX765629       <-- ACCACCAAGAAAACCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903038       <-- ACCACCAAGAAAGCCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA  Raphanus sativus cv Rat-Tail Radish #3870
FY441180       <-- ACCACCAAGAAAGCCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA  Raphanus sativus cv GSK3-1
FY442923       <-- ACCACCAAGAAAGCCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA  Raphanus sativus cv GSK3-1
FY442161       <-- ACCACCAAGAAAGCCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA  Raphanus sativus cv GSK3-1
EY947390       <-- ACCACCAAGAAAGCCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA  Raphanus sativus cv Rat-Tail Radish #3870
FD978800       <-- ACCACCAAGAAAACCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD577373       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943998       --> ACCACCAAGAAAACCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA  Raphanus sativus cv Rat-Tail Radish #3870
EX907179       --> ACCACCAAGAAAGCCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA  Raphanus sativus cv Rat-Tail Radish #3870
FD974976       --> ACCACCAAGAAAACCGTCAAAAAGAACCCGATTCCACGAATCAAAGTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581684       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870

               351    -    401
UN05665        --> AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
EX765629       <-- AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
EX903038       <-- AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
FY441180       <-- AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
FY442923       <-- AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
FY442161       <-- AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
EY947390       <-- AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
FD978800       <-- AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
FD577373       <-- .................gctTTAGCCATGAGTCCAACAGATGTGATCAAC
EY943998       --> AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
EX907179       --> AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
FD974976       --> AGTCTGCCGAGAATCCTGCCTTAGCCATGAGTCCAACAGATGTGATCAAC
FD581684       --> ..................................................

               401    -    451
UN05665        --> ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
EX765629       <-- ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
EX903038       <-- ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
FY441180       <-- ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
FY442923       <-- ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
FY442161       <-- ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
EY947390       <-- ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
FD978800       <-- ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
FD577373       <-- ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
EY943998       --> ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
EX907179       --> ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
FD974976       --> ATCACCGCAAAGTAAAACACAAAACCAGTCAACCCCGTGAATCCAATAAT
FD581684       --> ..................................................

               451    -    501
UN05665        --> CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
EX765629       <-- CCCCGCAAGGACTCCAGCGATGATGGACAGAGACGTCCGGCTGTTCTGTA
EX903038       <-- CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
FY441180       <-- CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
FY442923       <-- CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
FY442161       <-- CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
EY947390       <-- CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
FD978800       <-- CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
FD577373       <-- CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
EY943998       --> CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
EX907179       --> CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
FD974976       --> CCCCGCAAGGACTCCAGCGATGATGGACAGAAACGTCCGGCTGTTCTGTA
FD581684       --> ..................................................

               501    -    551
UN05665        --> TGACTTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- TGACTTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
EX765629       <-- TGACTTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
EX903038       <-- TGACTTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
FY441180       <-- TGACTTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
FY442923       <-- TGACTTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
FY442161       <-- TGACTTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
EY947390       <-- TGACCTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
FD978800       <-- TGACTTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
FD577373       <-- TGACTTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
EY943998       --> TGACTTTCAAATTCTTCTGTAGAT..........................
EX907179       --> TGACTTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
FD974976       --> TGACTTTCAAATTCTTCTGTAGATTCTCTCCACTGAAGGTTGGAATATCA
FD581684       --> ..................................................

               551    -    601
UN05665        --> CTCAGGACATCCTTTGATCTCTTCTCAGATGAACCCATTACAAATAGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- CTCAGGACATCCTTTGATCTCTTCTCAGATGAACCCATTACAAATAGTTA
EX765629       <-- CTCAGGACATCCTTTGATCTCTTCTCAGATGAACCCATTACAAATAGTTA
EX903038       <-- CTCAGGACATCCTTTGATCTCTTCTCAGATGAACCCATTACAAATAGTTA
FY441180       <-- CTCAGGACATCCTTTGATCTCTTCTCAGATGAACCCATTACAAATAGT-A
FY442923       <-- CTCAGGACATCCTTTGATCTCTTCTCAGATGAACCCATTACAAATAGT-A
FY442161       <-- CTCAGGACATCCTTTGATCTCTTCTCAGATGAACCCATTACAAATAGTTA
EY947390       <-- CTCAGGACATCCTTTGATCTCTTCTCAGATGAACCCATTACAAATAGTTA
FD978800       <-- CTCAGGACATCCTTTGATCTCTTCTCAGATGAACCCATTACAAATAGTTA
FD577373       <-- CTCAGGACATCCTTTGATCTCTTTTCAGATGAACCCATTACAAATAGTTA
EY943998       --> ..................................................
EX907179       --> CTCAGGACATCCTTTGATCTCTTCTCAGATGAACCCATTACAAATAGTTA
FD974976       --> CTCAGGACATCCTTTGATCTCTTCTCAGATGAACCCATTACAAATAGTT.
FD581684       --> ..................................................

               601    -    651
UN05665        --> GAAACGAGATCAGGAAGAGCAGAGCAGCGAATCTGAGAGATTGAGAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- GAAACGAGATCAGGAAGAGCAGAGCAGCGAATCTGAGAGATTGAGAGACA
EX765629       <-- GAAACGAGATCAGGAAGAGCAGAGCAGCcc....................
EX903038       <-- GAAACGAGATCAGGcc..................................
FY441180       <-- GAAACGAGATCAGGAAGAGCAG............................
FY442923       <-- GAAACGAGATCAGGAAGAG...............................
FY442161       <-- GAAACGAGATCAGGAAGAGCAGAGCAGCGAATCTGAGAGATTGAGAGACA
EY947390       <-- GAAACGAGATCAGGAAGAGCAGAGCAGCGAATCTGAGAGATTGAGAGAGA
FD978800       <-- GAAACGAGATCAGGAAGAGCAGAGCAGCGAATCTGAGAGATTGTGAGAGA
FD577373       <-- GAAACGAGATCAGGAAGAGCAGAGCAGCGAA...................
EY943998       --> ..................................................
EX907179       --> GAAACGAGATCAGGcc..................................
FD974976       --> ..................................................
FD581684       --> ..................................................

               651    -    701
UN05665        --> GAGAGAAAGCGAGGAAGAAACAACAAGGCGAGCTATCTTCTAAAGCCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY948263       <-- GAGAGAAAGCGAGGAAGAAACAACAAGGCGAGCTATCTTCTAAAGCCCAT
EX765629       <-- ..................................................
EX903038       <-- ..................................................
FY441180       <-- ..................................................
FY442923       <-- ..................................................
FY442161       <-- GAGAGAAAGC........................................
EY947390       <-- GAGAGAAAGCGAGGAAGAAACAACAAGGCcc...................
FD978800       <-- GAGAGAAAGCGAGGAAGAAACAACAAGGCGAGCTATCTTCTAAAGCCCAT
FD577373       <-- ..................................................
EY943998       --> ..................................................
EX907179       --> ..................................................
FD974976       --> ..................................................
FD581684       --> ..................................................

               701    -    751
UN05665        --> TCCC
                   ~~~~
EY948263       <-- TCCC
EX765629       <-- ....
EX903038       <-- ....
FY441180       <-- ....
FY442923       <-- ....
FY442161       <-- ....
EY947390       <-- ....
FD978800       <-- TCCC
FD577373       <-- ....
EY943998       --> ....
EX907179       --> ....
FD974976       --> ....
FD581684       --> ....