Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN05751

               1      -     51
UN05751        --> AACATGTAAACATGCATTTCTGAAACGGTCTTGTATTATGCATCAGGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- ..................................................
FD957629       <-- ..................................................
FD986429       <-- ..................................................
EV532851       --> AACATGTAAACATGCATTTCTGAAACGGTCTTGTATTATGCATCAGGGAG
FD953306       --> ..................cCTGAAACGGTCTTGTATTATGCATCAGGGAG
EW727947       --> ...................ccGAAACGGTCTTGTATTATGCATCAGGGAG
FD935055       --> .....................GAAACGGTCTTGTATTATGCATCAGGGAG
FD982688       --> ..................................................

               51     -    101
UN05751        --> TAGTTTTTACACAAACCTGTAAACTAAGAACCCAAGCAACGAATAA-AAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- .........................................AATAA-AAA
FD957629       <-- ..................................................
FD986429       <-- ..................................................
EV532851       --> TAGTTTTTACACAAACCTGTAAACTAAGAACCCAAGCAACGAATAA-AAA
FD953306       --> TAGTTTTTACACAAACCTGTAAACTAAGAACCCAAGCAACGAATAA-AAA
EW727947       --> TAGTTTTTACACAAACCTGTAAACTAAGAACCCAAGCAACAAATAA-AAA
FD935055       --> TAGTTTTTACACAAACCTGTAAACTAAGAACCCAAGCAACAAATAAGAAA
FD982688       --> ..................................................

               101    -    151
UN05751        --> AAATGGCAACTGAACTTGTTATTTGGAGCATATCCAAATCAAAGAGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- AAATG-CAACTGAACT-GTTATTTGGAGCATATCCAAATCAAAGAGAGTT
FD957629       <-- ..................................................
FD986429       <-- ..................................................
EV532851       --> AAATGGCAACTGAACTTGTTATTTGGAGCATATCCAAATCAAAGAGAGTT
FD953306       --> AA-TGGCAACTGAACTTGTTATTTGGAGCATATCCAAATCAAAGAGAGTT
EW727947       --> AA-TGGCAACTGAACTTGTTATTTGGAGCATATCCAAATCAAAGAGAGTT
FD935055       --> AAATGGCAACTGAACTTGTTATTTGGAGCATATCCAAAT...........
FD982688       --> ....GGCAACTGAACTTGTTATTTGGAGCATATCCAAATCAAAGAGAGTT

               151    -    201
UN05751        --> ATGTACTCGCATACACACTGCATTTATGAGGAACCAAGGAGTGGAAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- ATGTACTCGCATACACACTGCATTTATGAGGAACCAAGGAGTGGAAAGCC
FD957629       <-- ..................................................
FD986429       <-- ..................................................
EV532851       --> ATGTACTCGCATACACACTGCATTTATGAGGAACCAAGGAGTGGAAAGCC
FD953306       --> ATGTACTCGCATACACACTGAATTTATGAGGAACCAAGGAGTGGAAAGCC
EW727947       --> ATGTACTCGCATACACACTGCATTTATGAGGAACCAAGGAGTGGAAAGCC
FD935055       --> ..................................................
FD982688       --> ATGTACTCGCATACACACTGAATTTATGAGGAACCAAGGAGCGGAAAGCC

               201    -    251
UN05751        --> AAAGAGACTAATGTCTAATTCTGCTCGACATAAGATTTAACGCTCTCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- AAAGAGACTAATGTCTAATTCTGCTCGACATAAGATTTAACGCTCTCCAT
FD957629       <-- ...GAGACTAATGTCTAATTCTGCTCGACATAAGATTTAACGCTCTCCAT
FD986429       <-- ..................................................
EV532851       --> AAAGAGACTAATGTCTAATTCTGCTCGACATAAGATTTAACGCTCTCCAT
FD953306       --> AAAGAGACTAATGTCTAATTCTGCTCGACATAAGATTTAACGCTCTCCAT
EW727947       --> AAAGAGACTAATGTCTAATTCTGCTCGACATAAGATTTAACGCTCTCCAT
FD935055       --> ..................................................
FD982688       --> AAAGAGACTAATGTCTAATTCTGCTCGACATAAGATTTAACGCTTTCCAT

               251    -    301
UN05751        --> CCATCTAACGTACTCGAATTTACTTTTGTTCTTCATATAACGATGCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- CCATCTAACGTACTCGAATTTACTTTTGTTCTTCATATAACGATGCAAGA
FD957629       <-- CCATCTAACGTACTCGAATTTACTTTTGTTCTTCATATAACGATGCAAGA
FD986429       <-- .........GTACTCGAATTTACTTTTGTTCTTCATATAACGATGCAAGA
EV532851       --> CCATCTAACGTACTCGAATTTACTTTTGTTCTTCATATAACGATGCAAGA
FD953306       --> CCATCTAACGTACTCGAATTTACTTTTGTTCTTCATATAACGATGCAAGA
EW727947       --> CCATCTAACGTACTCGAATTTACTTTTGTTCTTCATATAACGATGCAAGA
FD935055       --> ..................................................
FD982688       --> CCATCTAACGTACTCGAATTTACTTTTGTTCTTCATATAACGATGCAAGA

               301    -    351
UN05751        --> AAACAGCAAGCTCGTCGCTTATACCCCTCTCCTCTAAAAACTGATAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- AAACAGCAAGCTCGTCGCTTATACCCCTCTCCTCTAAAAACTGATAAAGA
FD957629       <-- AAACAGCAAGCTCGTCGCTTATACCCCTCTCCTCTAAAAACTGATAAAGA
FD986429       <-- AGACAGCAAGCTCGTCGCTTATACCCCTCTCCTCTAAAAACTGATAAAGA
EV532851       --> AAACAGCAAGCTCGTCGCTTATACCCCTCTCCTCTAAAAACTGATAAAGA
FD953306       --> AAACAGCAAGCTCGTCGCTTATACCCCTCTCCTCTAAAAACTGATAAAGA
EW727947       --> AAACAGCAAGCTCGTCGCTTATACCCCTCTCCTCTAAAAACTGATAAAGA
FD935055       --> ..................................................
FD982688       --> AGACAGCAAGCTCGTCGCTTATACCCCTCTCCTCTAAAAACTGATAAAGA

               351    -    401
UN05751        --> GCGTCTTGAGGCTCATCATCTAATTCCTCAAACTCTGGTCCAGCGTAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- GCGTCTTGAGGCTCATCATCTAATTCCTCAAACTCTGGTCCAGCGTAGGA  Raphanus raphanistrum subsp. maritimus
FD957629       <-- GCGTCTTGGGGCTCATCATCTAACTCCTCAAACTCTGGTCCAGCGTAGGA  Raphanus sativus cv Rat-Tail Radish #3870
FD986429       <-- GCGTCTTGAAGCTCATCATCTAATTCCTCAAACTCTGGTCCAGCGTAGGA  Raphanus raphanistrum subsp. landra
EV532851       --> GCGTCTTGAGGCTCATCATCTAATTCCTCAAACTCTGGTCCAGCGTAGGA  Raphanus raphanistrum subsp. maritimus
FD953306       --> GCGTCTTGGGGCTCATCATCTAACTCCTCAAACTCTGGTCCAGCGTAGGA  Raphanus sativus cv Rat-Tail Radish #3870
EW727947       --> GCGTCTTGAAGCTCATCATCTAATTCCTCAAACTCTGGTCCACCGTAGGA  Raphanus sativus cv Early Scarlet Globe
FD935055       --> ..................................................  Raphanus sativus var. oleiformis
FD982688       --> GCGTCTTGAAGCTCATCATCTAATTCCTCAAACTCTGGTCCAGCGTAGGA  Raphanus raphanistrum subsp. landra

               401    -    451
UN05751        --> AGACGGCGAGCTGTTGGTGCCTTTACGAATGCAGAGCTTGGATATCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- AGACGGCGAGCTGTTGGTGCCTTTACGAATGCAGAGCTTGGATATCTCAA
FD957629       <-- AGACGGCGAGCTGTTGGTGCCTTTACGAATGCAGAGCTTGGATATCTCAA
FD986429       <-- AGACGGCGAGCTGTTGGTGCCTTTACGAATGCAGAGCTTGGATATCTCAA
EV532851       --> AGACGGCGAGCTGTTGGTGCCTTTACGAATGCAGAGCTTGGATATCTCAA
FD953306       --> AGACGGCGAGCTGTTGGTGCCTTTACGAATGCAGAGCTTGGATATCTCAA
EW727947       --> AGAAGGCGAGCTGTTGGTGCCTTTACGAATGCAGAGCTTGGATATCTCAA
FD935055       --> ..................................................
FD982688       --> AGACGGCGAGCTGTTGGTGCCTTTACGAATGCAGAGCTTGGATATCTCAA

               451    -    501
UN05751        --> TGTTATCAGGCCAAGCGGAACACACGATCTCCAAGGATTCACCAGGAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- TGTTATCAGGCCAAGCGGAACACACGATCTCCAAGGATTCACCAGGAACG
FD957629       <-- TGTTATCAGGCCAAGCGGAACACACGATCTCCAAGGATTCACCAGGAACG
FD986429       <-- TGTTATCAGGCCAAGCGGAACACACGATCTCCAAGGATTCACCAGGAACG
EV532851       --> TGTTATCAGGCCAAGCGGAACACACGATCTCCAAGGATTCACCAGGAACG
FD953306       --> TGTTATCAGGCCAAGCGGAACACACGATCTCCAAGGATTCACCAGGAACG
EW727947       --> TGTTATCAGGCCAAGCAGAACACACGATCTCCAAGGATTCACCAGGAACG
FD935055       --> ..................................................
FD982688       --> TGTTATCAGGCCAAGCGGAACACACGATCTCCAAGGATTCACCAGGAACG

               501    -    551
UN05751        --> CCCTTAGAGATGTTGACAAGGAAAGTGATGTGAAGAATAAAGTCAGGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- CCCTTAGAGATGTTGACAAGGAAAGTGATGTGAAGAATAAAGTCAGGTTC
FD957629       <-- CCCTTAGAGATGTTGACAAGGAAAGTGATGTGAAGAATAAAGTCAGGTTC
FD986429       <-- CCCTTAGAGATGTTGACAAGGAAAGTGATGTGAAGAATAAAGTCAGGTTC
EV532851       --> CCCTTAGAGATGTTGACAAGGAAAGTGATGTGAAGAATAAAGTCAGGTTC
FD953306       --> CCCTTAGAGATGTTGACAAGGAAAGTGATGTGAAGAATAAAGTCAGGTTC
EW727947       --> CCCTTAGAGATGTTGACAAGGAAAGTGATGTGAAGAATAAAGTCAGGTTC
FD935055       --> ..................................................
FD982688       --> CCCTTAGAGATGTTGACAAGGAAAGTGATGTGAAGAATAAAGTCAGGTTC

               551    -    601
UN05751        --> AGTGCTGGTGGATTTTGAGGACGGAACTGATCTATCAAACATGGTTGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- AGTGCTGGTGGATTTTGAGGACGGAACTGATCTATCAAACATGGTTGCCT
FD957629       <-- AGTGCTGGTGGATTTTGACGACGGAACTGATCTATCAAACATGGTTGCCT
FD986429       <-- AGTGCTGGTGGATTTTGAGGACGGAACTGATCTATCAAACATGGTTGCCT
EV532851       --> AGTGCTGGTGGATTTTGAGGACGGAACTGATCTATCAAACATGGTTGCCT
FD953306       --> AGTGCTGGTGGATTTTGACGACGGAACTGATCTATCAAACATGGTTGCCT
EW727947       --> AGTGCTGGTGGATTTTGAGGACGGAACTGATCTATCAAACATGGTTGCCT
FD935055       --> ..................................................
FD982688       --> AGTGCTGGTGGATTTTGAGGACGGAACTGATCTATCAAACATGGTTGCCT

               601    -    651
UN05751        --> CGACTTTAATGTCTTCTTTCTCACCATACTTCCTCTTCAAGCTAATCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- CGACTTTGATGTCTTCTTTCTCACCATACTTCCTCTTCAAGCTAATCCAC
FD957629       <-- CGACTTTAATGTCTTCTTTCTCCCCATACCTCCTCTTCAAGCTAATCCAC
FD986429       <-- CGACTTTAATGTCTTCTTTCTCACCATACTTCCTCTTCAAGCTAATCCAC
EV532851       --> CGACTTTGATGTCTTCTTTCTCACCATACTTCCTCTTCAAGCTAATCCAC
FD953306       --> CGACTTTAATGTCTTCTTTCTCCCCATACCTCCTCTTCAAGCTAATCCAC
EW727947       --> CAACTTTAATGTCTTCTTTCTCCCCATACTTCCTCTTCAAGCTAATCCAC
FD935055       --> ..................................................
FD982688       --> CGACTTTAATGTCTTCTTTCTCACCATACTTCCTCTTCAAGCTAATCCAC

               651    -    701
UN05751        --> TGCTCTCCAGGCCGTTCCTCCACAGTGAATGGACCATAACTGCTAGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- TGCTCTCCAGGCCGTTCCTCCACAGTGAATGGACCATAACTGCTAGGCGA
FD957629       <-- TGCTCTCCAGGCCGTTCCTCCACAGTGAATGGACCATAACTGCTAGGAGA
FD986429       <-- TGCTCTCCAGGTCGTTCCTCCACAGTGAATGGACCATAACTGCTAGGAGA
EV532851       --> TGCTCTCCAGGCCGTTCCTCCACAGTGAATGGACCATAACTGCTAGGCGA
FD953306       --> TGCTCTCCAGGCCGTTCCTCCACAGTGAATGGACCATAACTGCTAGGAGA
EW727947       --> TGCTCTCCAGGCCTTTCCTCCACAGTGAATGGACCATAACTGCTAGGAGA
FD935055       --> ..................................................
FD982688       --> TGCTCTCCAGGTCGTTCCTCCACAGTGAATGGACCATAACTGCTAGGAGA

               701    -    751
UN05751        --> CTGAAGAGGAGGCGAGTGATTGAGTTCGTAATCGATCTCATTACGGATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- CTGAAGAGGAGGCGAGTGATTGAGTTCGTAATCGATCTCATTACGGATTA
FD957629       <-- CTGAAGAGGAGGCGAGTGATTGAGTTCGTAATCGATCTCGTTACGGATTA
FD986429       <-- CTGAAGAGGAGGCGAGTGATTGAGTTCGTAATCGATCTCATTACGGATTA
EV532851       --> CTGAAGAGGAGGCGAGTGATTGAGTTCGTAATCGATCTCATTACGGATTA
FD953306       --> CTGAAGAGGAGGCGAGTGATTGAGTTCGTAATCGATCTCGTTACGGATTA
EW727947       --> CTGAAGAGGAGGCGAGTGATTGAGTTCGTAATCGATCTCATTACGGATTA
FD935055       --> ..................................................
FD982688       --> CTGAAGAGGAGGCGAGTGATTGAGTT........................

               751    -    801
UN05751        --> GACGGCAGATGTTTCCTTGGAAAGCTGATTTCTGCATTTCTGAGACGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- GACGGCAGATGTTTCCTTGGAAAGCTGATTTCTGCATTTCTGAGACGTAA
FD957629       <-- GACGGCAGATGTTTCCTTGGAAAGCTGATTTATGCATTTCTGAGACGTAA
FD986429       <-- GACGGCAGATGTTTCCTTGGAAAGCTGATTTCTGCATTTCTGAGACGTAA
EV532851       --> GACGGCAGATGTTTCCTTGGAAAGCTGATTTCTGCATTTCTGAGACGTAA
FD953306       --> GACGGCAGATGTTTCCTTGGAAAGCTGATTTATGCATTTCTGAGACGTA.
EW727947       --> GACGGCAGATGTTTCCTTGGAAAGCTGATTTCTGCATTTCTGAGACGTAA
FD935055       --> ..................................................
FD982688       --> ..................................................

               801    -    851
UN05751        --> CTCCCCGCCGAGCTTAGACATCTCCCAGAGCTGATCAAAAAGTTTCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- CTCCCCGCCGAGCTTAGACATCTCCCAGAGCTAATCAAAAAGTTTCCATT
FD957629       <-- CTCCCCGCCGAGCTTAGACATCTCCCAGAGCTGATCAAAAAGTTTCCATT
FD986429       <-- CTCCCCGCCGAGCTTAGACATCTCCCAGAGCTGATCAAAAAGTTTCCATT
EV532851       --> CTCCCCGCCGAGCTTAGACATCTCCCAGAG....................
FD953306       --> ..................................................
EW727947       --> CTCCCCGCCGAGCTTAGACATCTCCCAGAGCTAATC..............
FD935055       --> ..................................................
FD982688       --> ..................................................

               851    -    901
UN05751        --> TTGATTCGTGGGTAAACCGATTTTGGGGTTCCGGTACGCAATCGAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- TTGATTCGTGGGTAAACCGATTTTGGGGTTCCGGTACGCAATCGAAGTAG
FD957629       <-- TTGATTCGTGGGTAAACCGATTTTAGGGTTCCGGTACGCAATCGAAGGAG
FD986429       <-- TTGATTCGTGGGTAAACCGATTTTGGGGTTCCGGTACGCAATCGAAGGAG
EV532851       --> ..................................................
FD953306       --> ..................................................
EW727947       --> ..................................................
FD935055       --> ..................................................
FD982688       --> ..................................................

               901    -    951
UN05751        --> ACGAATTGGAGAAGACGGTTCTCCTCAGACATCTGACTAATCGCGCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529001       <-- ACGAATTGAAGAAGACGGTTCTCCTCAGACATCTGACTAATCGCGCCATC
FD957629       <-- ACGAATTGGAGAAGACGGTTCTCCTCAGACATCTGACTAATCGCGCCATC
FD986429       <-- ACGAATTGGAGAAGACGGTTCTCCTCAGACATCTGACTAATCGAGCCATC
EV532851       --> ..................................................
FD953306       --> ..................................................
EW727947       --> ..................................................
FD935055       --> ..................................................
FD982688       --> ..................................................

               951    -   1001
UN05751        --> GACAGAGGATGCC
                   ~~~~~~~~~~~~~
EV529001       <-- GACAGAGGATGCC
FD957629       <-- GACAGAGGATcc.
FD986429       <-- GACcc........
EV532851       --> .............
FD953306       --> .............
EW727947       --> .............
FD935055       --> .............
FD982688       --> .............