Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN06249

               1      -     51
UN06249        --> AAAGAGCATAAGCTCTCAGTGAACCTTAGTTGAGTATATAATATATATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- ..AGAGCATAAGCTCTCAGTGAAC-TTAGTTGAGTATATA-TATATATAA
FD532324       <-- ................CAGTGA-CCTTAGTTGAGTATATAATATATATAA
FD578056       <-- ..................................................
EY900750       <-- ..................................................
FD958410       <-- ..................................................
EY937024       --> AAAGAGCATAAGCTCTCAGTGAACCTTAGTTGAGTATATAATATATATAA
FD953897       --> ..............CTCAGTGAACCTTAGTTGAGTATATA---TATATAA
FD528834       --> ................CAGTGAACCTTAGTTGAGTATATAATATATATAA

               51     -    101
UN06249        --> CATTACACTATGATTTGGATTTGTTCTTGCATAGACAGAAGTAAAAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- CATTACACTATGATTTGGATTTGT-C-TGCATAGACAGAAGTAAAAGTGT
FD532324       <-- CATTACACTATGATTTGGATTTGTTCTTGCATAGACAGAAGTAAAAGTGT
FD578056       <-- ............ATTTGGATTTGTTCTTGCATAGACAGAAGTAAAAGTGT
EY900750       <-- .............................CATAGACAGAAGTAAAAGTGT
FD958410       <-- ..................................................
EY937024       --> CATTACACTATGATTTGGATTTGTTCTTGCATAGACAGAAGTAAAAGTGT
FD953897       --> CATTACACTATGATTTGGATTTGTTCTTGCATAGACAGAAGTAAAAGTGT
FD528834       --> CATTACACTATGATTTGGATTTGTTCTTGCATAGACAGAAGTAAAAGTGT

               101    -    151
UN06249        --> AAAGAACAACAAAAACACATAGATTCACAAGGGGGGTTGAAGGAACAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- AAAGAACAACAAAAACACATAGATTCACAAGGGGGGTTGAAGGAACAAGG
FD532324       <-- AAAGAACAACAAAAACACATAGATTCACAAGGGGGGTTGAAGGAACAAGG
FD578056       <-- AAAGAACAACAAAA-CACATAGATTCACAAGGGGG-TTGAAGGAACAAGG
EY900750       <-- AAAGAACAACAAAAACACATAGATTCACAAGGGGGGTTGAAGGAACAAGG
FD958410       <-- ..................................................
EY937024       --> AAAGAACAACAAAAACACATAGATTCACAAGGGGGGTTGAAGGAACAAGG
FD953897       --> AAAGAACAACAAAAACACATAGATTCACAAGGGGG-TTGAAGGAACAAGG
FD528834       --> AAAGAACAACAAAAACACATAGATTCACAAGGGGGGTTGAAGGAACAAGG

               151    -    201
UN06249        --> TTGTATCCGTGTGATGATATTCTTATAAACTACTGAACTTTGTTTCATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- TTGTATCCGTGTGATGATATTCTTATAAACTACTGAACTTTGTTTCATCC
FD532324       <-- TTGTATCCGTGTGATGATATTCTTATAAACTACTGAACTTTGTTTCATCC
FD578056       <-- TTGTATCCGTGTGATGATATTCTTATAAACTACTGAACTTCGTTTCATCC
EY900750       <-- TTGTATCCGTGTGATGATATTCTTATAAACTACTGAACTTTGTTTCATCC
FD958410       <-- ..................................................
EY937024       --> TTGTATCCGTGTGATGATATTCTTATAAACTACTGAACTTTGTTTCATCC
FD953897       --> TTGTATCCGTGTGATGATATTCTTATAAACTACTGAACTTCGTTTCATCC
FD528834       --> TTGTATCCGTGTGATGATATTCTTATAAACTACTGAACTTTGTTTCATCC

               201    -    251
UN06249        --> ATTCTTGGATGCTACCGCCTGCATAGCATTACATTCTTCAAGTAGATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- ATTCTTGGATGCTACCGCCTGCATAGCATTACATTCTTCAAGTAGATTAA
FD532324       <-- ATTCTTGGATGCTACCGCCTGCATAGCATTACATTCTTCAAGTAGATTAA
FD578056       <-- GTTCTTGGATGCTACAGCCTGCATAGCATTACATTCTTCAAGTAGATTTA
EY900750       <-- ATTCTTGGATGCTACCGCCTGCATAGCATTACATTCTTCAAGTAGATTAA
FD958410       <-- ......................ATAGCATTACATTCTTCAAGTAGATTTA
EY937024       --> ATTCTTGGATGCTACCGCCTGCATAGCATTACATTCTTCAAGTAGATTAA
FD953897       --> GTTCTTGGATGCTACAGCCTGCATAGCATTACATTCTTCAAGTAGATTTA
FD528834       --> ATTCTTGGATGCTACCGCCTGCATAGCATTACATTCTTCAAGTAGATTAA

               251    -    301
UN06249        --> GCAAGTTGTGTTCAGGGGCACTGAGTGACGGCAATATAGAACGGTTTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- GCAAGTTGTGTTCAGGGGCACTGAGTGACGGAAATATAGAACGGTTTGGC
FD532324       <-- GCAAGTTGTGTTCAGGGGCACTGAGTGACGGCAATATAGAACGGTTTGGC
FD578056       <-- GCAAGTTGTGTTCTGGGGCACTGAGTGATGGCAATATAGAACGGTTTGGC
EY900750       <-- GCAAGTTGTGTTCAGGGGCACTGAGTGACGGCAATATAGAACGGTTTGGC
FD958410       <-- GCAAGTTGTGTTCTGGGGCACTGAGTGATGGCAATATAGAACGGTTTGGC
EY937024       --> GCAAGTTGTGTTCAGGGGCACTGAGTGACGGAAATATAGAACGGTTTGGC
FD953897       --> GCAAGTTGTGTTCTGGGGCACTGAGTGATGGCAATATAAAACGGTTTGGC
FD528834       --> GCAAGTTGTGTTCAGGGGCACTGAGTGACGGCAATATAGAACGGTTTGGC

               301    -    351
UN06249        --> TGGCTAGGGCGAGGCGGTTTTGGTGCAGATCCATCAGATTCAGCAATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- TGGCTAGGGCGAGGCGGTTTTGGTGCAGATCCATCAGATTCAGCAATCTG
FD532324       <-- TGGCTAGGGCGAGGCGGTTTTGGTGCAGATCCATCAGATTCAGCAATCTG
FD578056       <-- TGGCTAGGGCGAGGCGGTTTTGGTGCAGATCCATCAGATTCAGCAATCTG
EY900750       <-- TGGCTAGGGCGAGGCGGTTTTGGTGCAGATCCATCAGATTCAGCAATCTG
FD958410       <-- TGGCTAGGGCGAGGCGGTTTTGGTGCAGATCCATCAGATTCAGCAATCTG
EY937024       --> TGGCTAGGGCGAGGCGGTTTTGGTGCAGATCCATCAGATTCAGCAATCTG
FD953897       --> TGGCTAGGGCGAGGCGGTTTTGGTGCAAATCCATCAAATTCAGCAATCTG
FD528834       --> TGGCTAGGGCGAGGCGGTTTTGGTGCAGATCCATCAGATTCAGCAATCTG

               351    -    401
UN06249        --> CAAATCACCTTTTATCCTCATAGATGCCGATACCCTCTCCTTCCAGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- CAAATCACCTTTTATCCTCATAGATGCCGATACCCTCTCCTTCCAGATTC
FD532324       <-- CAAATCACCTTTTATCCTCATAGATGCCGATACCCTCTCCTTCCAGATTC
FD578056       <-- CAAATCACCTTTTATCCTCATAGATGCCGATACCCTCTCCTTCCAGATTC
EY900750       <-- CAAATCACCTTTTATCCTCATAGATGCCGATACCCTCTCCTTCCAGATTC
FD958410       <-- CAAATCACCTTTTATCCTCATAGATGCCGATACCCTCTCCTTCCAGATTC
EY937024       --> CAAATCACCTTTTATCCTCATAGATGCCGATACCCTCTCCTTCCAGATTC
FD953897       --> CAAATCACCTTTTATCCTCATAGATGCCGATACCCTCTCCTTCCAAATTC
FD528834       --> CAAATCACCTTTTATCCTCATAGATGCCGATACCCTCTCCTTCCAGATTC

               401    -    451
UN06249        --> TTCCATCATTTAGAATGGATGGTTCGGGTAGTGGACACTGAATTGGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- TTCCATCATTTAGAATGGATGGTTCGGGTAGTGGACACTGAATTGGTTGA
FD532324       <-- TTCCATCATTTAGAATGGATGGTTCGGGTAGTGGACACTGAATTGGTTGA
FD578056       <-- TTCCATCATTTAGAATGGATGGTTCAGGTAGTGGACACTGAATTGGTTGA
EY900750       <-- TTCCATCATTTAGAATGGATGGTTCGGGTAGTGGACACTGAATTGGTTGA
FD958410       <-- TTCCATCATTTAGAATGGATGGTTCAGGTAGTGGACACTGAATTGGTTGA
EY937024       --> TTCCATCATTTAGAATGGATGGTTCGGGTAGTGGACACTGAATTGGTTGA
FD953897       --> TTCCATCATTTAAAATGGATGGTTCAGGTAGTGGACACTGAATTGGTTGA
FD528834       --> TTCCATCATTTAGAATGGATGGTTCGGGTAGTGGACACTGAATTGGTTGA

               451    -    501
UN06249        --> TCATTGTCCAAAGGCTCGACCGGATGTTCCACTGGTTTAAACTCCGTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- TCATTGTCCAAAGGCTCGACCGGATGTTCCACTGGTTTAAACTCCGTTGC
FD532324       <-- TCATTGTCCAAAGGCTCGACCGGATGTTCCACTGGTTTAAACTCCGTTGC
FD578056       <-- TCATTGTCCAAAGGCTCGACCGGATGTTCCACTGGTTTAAACTCCGTTGC
EY900750       <-- TCATTGTCCAAAGGCTCGACCGGATGTTCCACTGGTTTAAACTCCGTTGC
FD958410       <-- TCACTGTCCAAAGGCTCGACCGGATGTTCCACTGGTTTAAACTCCGTTGC
EY937024       --> TCATTGTCCAAAGGCTCGACCGGATGTTCCACTGGTTTAAACTCCGTTGC
FD953897       --> TCACTGTCCAAAGGCTCGACCGGATGTTCCACTGGTTTAAACTCCGTTGC
FD528834       --> TCATTGTCCAAAGGCTCGACCGGATGTTCCACTGGTTTAAACTCCGTTGC

               501    -    551
UN06249        --> TACCTCAATTCCATGAGTAGCAGTTGTGGTAGTAACATCAGGATTTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- TACCTCAATTCCATGAGTAGCAGTTGTGGTAGTAACATCAGGATTTGGAG
FD532324       <-- TACCTCAATTCCATGAGTAGCAGTTGTGGTAGTAACATCAGGATTTGGAG
FD578056       <-- TACCTCAATTCCATGAGTAGCAGTTGTGGTAGTAACATCAGGATTTGGAG
EY900750       <-- TACCTCAATTCCATGAGTAGCAGTTGTGGTAGTAACATCAGGATTTGGAG
FD958410       <-- TACCTCAATTCCATGAGTAGCAGTTGTGGTAGTAACATCAGGATTTGGAG
EY937024       --> TACCTCAATTCCATGAGTAGCAGTTGTGGTAGTAACATCAGGATTTGGAG
FD953897       --> TACCTCAATTCCATGAGTAGCAGTTGTGGTAGTAACATCAGGATTTGGAG
FD528834       --> TACCTCAATTCCATGAGTAGCAGTTGTGGTAGTAACATCAGGATTTGGAG

               551    -    601
UN06249        --> CTAATACTTCCTTATCATCGATTGCACTTTGAGTCCGTCGATGGCTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- CTAATACTTCCTTATCATCGATTGCACTTTGAGTCCGTCGATGGCTGCTT
FD532324       <-- CTAATACTTCCTTATCATCGATTGCACTTTGAGTCCGTCGATGGCTGCTT
FD578056       <-- CTAATACTTCCTTATCATCGATTGCACTTTGAGTCCGTCGATGGCTGCTT
EY900750       <-- CTAATACTTCCTTATCATCGATTGCACTTTGAGTCCGTCGATGGCTGCTT
FD958410       <-- CTAATACTTCCTTATCATCGATTGCACTTTGAGTCCGTCGATGGCTGCTT
EY937024       --> CTAATACTTCCTTATCATCGATTGCACTTTGAGTCCGTCGATGGCTGCTT
FD953897       --> CTAATACTTCCTTATCATCGATTGCACTTTGAGTCCGTCGATGGCTGCTT
FD528834       --> CTAATACTTCCTTATCATCGATTGCACTTTGAGTCCGTCGATGGCTGCTT

               601    -    651
UN06249        --> CTACCAACAGCAAATCTTGAAAAAATACCAACCATGGTTTTATTGAATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- CTACCAACAGCAAATCTTGAAAAAATACCAACCATGGTTTTATTGAATTT  Raphanus sativus cv Early Scarlet Globe
FD532324       <-- CTACCAACAGAAAATCTTGAAAAAATACCAACCATGGTTTTATTGAATTT  Raphanus raphanistrum subsp. maritimus
FD578056       <-- CTACCAACAGCAA-TCTTGAAAAAATACCAACCATGGTTTTATTGAATTT  Raphanus sativus cv Rat-Tail Radish #3870
EY900750       <-- CTACCAACAGAAAATCTTGAAAAAATACCAACCATGGTTTTATTGAATTT  Raphanus raphanistrum subsp. maritimus
FD958410       <-- CTACCAACAGCAAATCTTGAAAAAATACCAACCATGGTTTTATTGAATTT  Raphanus sativus cv Rat-Tail Radish #3870
EY937024       --> CTACCAACAGCAAATCTTGAAAAAATACCAACCATGGTTTTATTGAATTT  Raphanus sativus cv Early Scarlet Globe
FD953897       --> CTACCAACAGCAAATCTTGAAAAAATACCAACCATGGTTTTATTGAATTT  Raphanus sativus cv Rat-Tail Radish #3870
FD528834       --> CTACCAACAGAAAATCTTGAAAAAATACCAACCATGGTTTTATTGAATTT  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN06249        --> GAAATTCTTTTTTCTTTTTTTGAATCTGAAATTCTTGTGATCACTAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- GAAATTCTTTTTTCTTTTTTTGAATCTGAAATTCTTGTGATCACTAAACA
FD532324       <-- GAAATTCTTTTTTCTTTTTTTGAATCTGAAATTCTTGTGATCAAAAAACA
FD578056       <-- GAAATTCTTTTTTCTTTTTTTGAATCTGAAATTCTTGTGATCACTAAACA
EY900750       <-- GAAATTCTTTTTTCTTTTTT-GAATCTGAAATTCTTGTGATCACTAAACA
FD958410       <-- GAAATTCTTTTTTCTTTTTTTGAATCTGAAATTCTTGTGATCACTAAACA
EY937024       --> GAAATTCTTTTTTCTTTTTTTGAATCTGAAATTCTTGTGATCACTAAACA
FD953897       --> GAAATTCTTTTTTCTTTTTTTGAATCTGAAATTCTTGTGATCACTAAACA
FD528834       --> GAAATTCTTTTTTCTTTTTTTGAATCTGAAATTCTTGTGATCAAAAAACA

               701    -    751
UN06249        --> CGAACTCTCCCTTTGATCTTGAGTTCCAATAAAGAAACAGTTACGAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- CGAACTCTCCCTTTGATCTTGAGTTCCAATAAAGAAACAGTTACGAAGAC
FD532324       <-- CGTACTCTCCCTTTGATCTTGAGTTCCAATAAAGAAACAGTTACGAAGAC
FD578056       <-- CGAACTCTCCCTTTGATCTTGAGTTCCAATAAAGAAACAGTTACGAAGAC
EY900750       <-- CGCACTCTCCCTTTGATCTTGAGTTCCAATAAAGAAACAGTTACGAAGAC
FD958410       <-- CGAACTCTCCCTTTGATCTTGAGTTCCAATAAAAAAACAGTTACGAAGAC
EY937024       --> CGAACTCTCCCTTTG...................................
FD953897       --> CGAACTCTCCCTTTGATCTTGAGTTCCAATAAAAAAACAGTTACGAAGAC
FD528834       --> CGTACTCTCCCTTTGATCTTGAGTTCCAATAAAGAAACAGTT........

               751    -    801
UN06249        --> GAAGAAAGAGACGGAGGATTTGAGTTTATCTTC........
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941443       <-- GAAGAAAGAGACGGAGGATTTGAGTTTATCTTCcac.....
FD532324       <-- GAAGAAAGAGACGGAGc........................
FD578056       <-- GAAGAAAGAGACGGAGGATTTGAGTTTATCTTCcc......
EY900750       <-- GAAGAAAGAGACGGAGGATTTGAGTTTATCTTCaacccc..
FD958410       <-- GAAGAAAGAGACGGAGGATTTGAGTTTATCTTCaaccaccc
EY937024       --> .........................................
FD953897       --> GAAGAAAGAGACGGAGGATTTGAGTTTATCTTCaaccacc.
FD528834       --> .........................................