1      -     51
UN06384        --> AAAAATTTATGTAAAATGCAATAAAAATAATTACAAATATTGCGAATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- AAAAATTTATGTAAAATGCAATAAAAATAATTACAAATATTGCGAATTTT  Raphanus sativus var. oleiformis
EV537861       <-- .....TTTATGTAAAATGCAATAAAAATAATTACAAATATTGCGAATTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970341       <-- ...........TAAAATGCAATAAAAATAATTACAAATATTGCGAATTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX747648       <-- ...............ATGCAATAAAAAGAATTACAAATATTGCGAATTGT  Raphanus raphanistrum subsp. maritimus
EV526940       <-- .........................................GCGAACTGT  Raphanus raphanistrum subsp. maritimus
FD963892       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV542012       --> .....TTTATGTAAAATGCAATAAAAATAATTACAAATATTGCGAATTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960061       --> .............AAATGCAATAAAAAGAATTACAAATATTGCGAATTGT  Raphanus raphanistrum subsp. maritimus
EX751791       --> ...............ATGCAATAAAAAGAATTACAAATATTGCGAATTGT  Raphanus raphanistrum subsp. maritimus
EV531293       --> .........................................GCGAACTGT  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN06384        --> TGATAGACAGTTATATATTTTATCATATATAGATAAAATAAATGAACGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- TGATAGACAGTTATATATTTTATCATATATAGATAAAATAAATGAACGTA
EV537861       <-- TGATAGACAGTTATATATTTTATCATATATAGATAAAATAAATGAACGTA
FD970341       <-- TGATAGACAGTTATATATTTTATCATATATAGATAAAATAAATGAACGTA
EX747648       <-- TGATAGACAGTTATATATTTTATCATATATAGATAAAATAAATGAACGTA
EV526940       <-- TGATAGACAGTTATATATTTTATCATATATAGATAAAATAAATGAACGTA
FD963892       <-- ..................................................
EV542012       --> TGATAGACAGTTATATATTTTATCATATATAGATAAAATAAATGAACGTA
FD960061       --> TGATAGACAGTTATATATTTTATCATATATAGATAAAATAAATGAACGTA
EX751791       --> TGATAGACAGTTATATATTTTATCATATATAGATAAAATAAATGAACGTA
EV531293       --> TGATAGACAGTTATATATTTTATCATATATAGATAAAATAAATGAACGTA

               101    -    151
UN06384        --> GATATGTTAATATTAGCGTATGACATTTTAAATTTTTTAGACCACTTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- GATATGTTAATATTAGCGTATGACATTTTAAATTTTTTAGACCACTTGCA
EV537861       <-- GATATGTTAATATTAGCGTATGACATTTTAAATTTTTTAGACCACTTGCA
FD970341       <-- GATATGTTAATATTAGCGTATGACATTTTAAATTTTTTAGACCACTTGCA
EX747648       <-- GATATGTTAATATTAGCGTATGACATTTTAAATTTTTTAGACCACTTGCA
EV526940       <-- GATATGTTAATATTAGCGTATGACATTTTAAATTTTTTAGACCACTTGCA
FD963892       <-- ..................................................
EV542012       --> GATATGTTAATATTAGCGTATGACATTTTAAATTTTTTAGACCACTTGCA
FD960061       --> AATATGTTAATATTAGCGTATGACATTTTAAATTTTTTAAACCACTTGCA
EX751791       --> GATATGTTAATATTAGCGTATGACATTTTAAATTTTTTAGACCACTTGCA
EV531293       --> GATATGTTAATATTAGCGTATGACATTTTAAATTTTTTAGACCACTTGCA

               151    -    201
UN06384        --> TGAAGATCGAAGAAAACGTCTATCCTCGGATGACTAACTAGTATATCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- TGAAGATCGAAGAAAACGTCTATCCTCGGATGACAAACTAGTATATCCAA
EV537861       <-- TGAAGATCGAAGAAAACGTCTATCCTCGGATGACTAACTAGTATATCCAA
FD970341       <-- TGAAGATCGAAGAAAACGTCTATCCTCGGATGACTAACTAGTATATCCAA
EX747648       <-- TGAAGATCGAAGAAAACGTCTATCCTCGGATGACTAACTAGTATATCCAA
EV526940       <-- TGAAGATCGAAGAAAACGTCTATCCTCGGATGACTAACTAGTATATCCAA
FD963892       <-- ..................................................
EV542012       --> TGAAGATCGAAGAAAACGTCTATCCTCGGATGACTAACTAGTATATCCAA
FD960061       --> TGAAGATCGAAAAAAACGTCTATCCTCGGATGACTAACTAGTATATCCAA
EX751791       --> TGAAGATCGAAGAAAACGTCTATCCTCGGATGACTAACTAGTATATCCAA
EV531293       --> TGAAGATCGAAGAAAACGTCTATCCTCGGATGACTAACTAGTATATCCAA

               201    -    251
UN06384        --> TCATACTCTTTATGTGGGGCTTCTGTATTTTTTCTCGTCAAATAGATGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- TCATACTCTTTATGTGGGGCTTCTGTATTTTTTCTCGTAAAATAGATGCC
EV537861       <-- TCATACTCTTTATGTGGGGCTTCTGTATTTTTTCTCGTCAAATAGATGCC
FD970341       <-- TCATACTCCTTATGTGGGGCTTCTGTATTTTTTCTCGTCAAATAGATGCC
EX747648       <-- TCATACTCTTTATGTGGGGCTTCTGTATTTTTTCTCGTCAAATAGATGCC
EV526940       <-- TCATACTCTTTATGTGGGGCTTCTGTATTTTTTCTCGTCAAATAGATGCC
FD963892       <-- ..................................................
EV542012       --> TCATACTCTTTATGTGGGGCTTCTGTATTTTTTCTCGTCAAATAGATGCC
FD960061       --> TCATACTCTTTATGTGGGGCTTCTGTATTTTTTCTCGTCAAATAGATGCC
EX751791       --> TCATACTCTTTATGTGGGGCTTCTGTATTTTTTCTCGTCAAATAGATGCC
EV531293       --> TCATACTCTTTATGTGGGGCTTCTGTATTTTTTCTCGTCAAATAGATGCC

               251    -    301
UN06384        --> ATCTTCTCTGGCTCTCCAATCCCATAAACCACGTCTTTTAAATGCTCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- ATCTTCTCTGGCTCTCCAATCCCATAAACCACGTCTTTTAAATGCTCTGA
EV537861       <-- ATCTTCTCTGGCTCTCCAATCCCATAAACCACGTCTTTTAAATGCTCTGA
FD970341       <-- ATCTTCTCTGGCTCTCCAATCCCATAAACCACGTCTTTTAAATGCTCTGA
EX747648       <-- ATCTTCTCTGGCTCTCCAATCCCATAAACCACGTCTTTTAAATGCTCTGA
EV526940       <-- ATCTTCTCTGGCTCTCCAATCCCATAAACCACGTCTTTTAAATGCTCTGA
FD963892       <-- ..................................................
EV542012       --> ATCTTCTCTGGCTCTCCAATCCCATAAACCACGTCTTTTAAATGCTCTGA
FD960061       --> ATCTTCTCTGGCTCTCCAATCCAATAAACCACGTCTTTTAAATGCTCTGA
EX751791       --> ATCTTCTCTGGCTCTCCAATCCCATAAACCACGTCTTTTAAATGCTCTGA
EV531293       --> ATCTTCTCTGGCTCTCCAATCCCATAAACCACGTCTTTTAAATGCTCTGA

               301    -    351
UN06384        --> AGCTCTGATGGTGTTTAAATCCAGGCCCTTGTTTCAAAGTGCACATATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- AGCTCTGATGGTGTTTAAATCCAGGCCCTTGTTTCAAAGTGCACATATAA
EV537861       <-- AGCTCTGATGGTGTTTAAATCCAGGCCCTTGTTTCAAAGTGCACATATAA
FD970341       <-- AGCTCTGATGGTGTTTAAATCCAGGCCCTTGTTTCAAAGTGCACATATAA
EX747648       <-- AGCTCTGATGGTGTTTAAATCCAGGCCCTTGTTTCAAAGTGCACATATAA
EV526940       <-- AGCTCTGATGGTGTTTAAATCCAGGCCCTTGTTTCAAAGTGCACATATAA
FD963892       <-- ..................................................
EV542012       --> AGCTCTGATGGTGTTTAAATCCAGGCCCTTGTTTCAAAGTGCACATATAA
FD960061       --> AGCTCTGATGGTGTTTAAATCCAGGCCCTTGTTTCAAAGTGCACATATAA
EX751791       --> AGCTCTGATGGTGTTTAAATCCAGGCCCTTGTTTCAAAGTGCACATATAA
EV531293       --> AGCTCTGATGGTGTTTAAATCCAGGCCCTTGTTTCAAAGTGCACATATAA

               351    -    401
UN06384        --> CGCGTGTTCCCCACAACATTCAAACCAAAATTGAATTCCCAATGAGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- CGGGTGTTCCCCACAACATTCAAACCAAAATTGAATTCCCAATGAGTTCC  Raphanus sativus var. oleiformis
EV537861       <-- CGGGTGTTCCCCACAACATTCAAACCAAAATTGAATTCCCAATGAGTTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970341       <-- CGGGTGTTCCCCACAACATTCAAACCAAAATTGAATTCCCAATGAGTTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX747648       <-- CGCGTGTTCCCCACAACATTCAAACCAAAATTGAATTCCCAATGAGTTCC  Raphanus raphanistrum subsp. maritimus
EV526940       <-- CGCGTGTTCCCCACAACATTCAAACCAAAATTGAATTCCCAATGAGTTCC  Raphanus raphanistrum subsp. maritimus
FD963892       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV542012       --> CGGGTGTTCCCCACAACATTCAAACCAAAATTGAATTCCCAATGAGTTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960061       --> CGCGTGTTCCCCA--ACATTCAAACCAAAATTGAATTCCCAATGAGTTCC  Raphanus raphanistrum subsp. maritimus
EX751791       --> CGCGTGTTCCCCACAACATTCAAACCAAAATTGAATTCCCAATGAGTTCC  Raphanus raphanistrum subsp. maritimus
EV531293       --> CGCGTGTTCCCCACAACATTCAAACCAAAATTGAATTCCCAATGAGTTCC  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN06384        --> TGGTTTTAATGTTCTCTCTTTTATCCTGTCGTCTGCGGAGAAGCAACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- TGGTTTTACTGTTCTCTCTTTTATCCTGTCGTCTGCGGAGAAACAACTCA  Raphanus sativus var. oleiformis
EV537861       <-- TGGTTTTACTGTTCTCTCTTTTATCCTGTCGTCTGCGGAGAAACAACTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970341       <-- TGGTTTTACTGTTCTCTCTTTTATCCTGTCGTCTGCGGAGAAACAACTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX747648       <-- TGGTTTTAATGTTCTCTCTTTTATCCTGTCGTCTGCGGAGAAGCAACTCA  Raphanus raphanistrum subsp. maritimus
EV526940       <-- TGGTTTTAATGTTCTCTCTTTTATCCTGTCGTCTGCGGAGAAGCAACTCA  Raphanus raphanistrum subsp. maritimus
FD963892       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV542012       --> TGGTTTTACTGTTCTCTCTTTTATCCTGTCGTCTGCGGAGAAACAACTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960061       --> TGGTTTTAATGTTCTCTCTTTTATCCTGTCGTCTGCGG............  Raphanus raphanistrum subsp. maritimus
EX751791       --> TGGTTTTAATGTTCTCTCTTTTATCCTGTCGTCTGCGGAGAAGCAACTCA  Raphanus raphanistrum subsp. maritimus
EV531293       --> TGGTTTTAATGTTCTCTCTTTTATCCTGTCGTCTGCGGAGAAGCAACTCA  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN06384        --> TATTAAGATCTTTCTGGAATTTGAGTTCGTTCGAAATCCTCACTCCATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- TATTAAGATCTTTCTGGAATTTGAGTTCGTTCGAAATCCTCACTCCATGG
EV537861       <-- TATTAAGATCTTTCTGGAATTTGAGTTCGTTCGAAATCCTCACTCCATGG
FD970341       <-- TATTAAGATCTTTCTGGAATTTGAGTTCGTTCGAAATCCTCACTCCATGG
EX747648       <-- TATTAAGATCTTTCTGGAATTTGAGTTCGTTCGAAATCCTCACTCCATGA
EV526940       <-- TATTAA............................................
FD963892       <-- .....................................CCTCACTCCATGG
EV542012       --> TATTAAGATCTTTCTGGAATTTGAGTTCGTTCGAAATCCTCACTCCATGG
FD960061       --> ..................................................
EX751791       --> TATTAAGATCTTTCTGGAATTTGAGTTCGTTCGAAATCCTCACTCCATGA
EV531293       --> TATTAAGATCCTTCTGGAATTTGAGTTCGTTCGAAATCCTCACTCCATGG

               501    -    551
UN06384        --> CCATGTACATAACCAATTATGCATAGGCTAAAAAGGAATAGAAAGATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- CCATGTACATAACCAATTATGCATAGGTCAAAAAGGAATAGAAAGATGGA
EV537861       <-- CCATGTACATAACCAATTATGCATAGGCTAAAAAGGAATAGAAAGATGGA
FD970341       <-- CCATGTACATAACCAATTATGCATAGGCTAAAAAGGAATAGAAAGATGGA
EX747648       <-- CCATGTACATAACCAATTATGCATAGGCTAAAAAGGAATAGAAAGATGGA
EV526940       <-- ..................................................
FD963892       <-- CCGTGTACATAACCAATTATGCATAGGCTAAAAAGGAATAGAAAGATGGA
EV542012       --> CCATGTACATAACCAATTATGCATAGGCTAAAAAGGAATAGAAAGATGGA
FD960061       --> ..................................................
EX751791       --> CCATGTACATAACCAATTATGCATAGGCTAAAAAGGAATAGAAAGATGGA
EV531293       --> GCATGTACATAACCAATTATGCATAGGCTAAAAAGGAATAGAAAGATGGA

               551    -    601
UN06384        --> GAGATCTTTCATCTTTTTATAAAAAGATGGTAAGATTTCTTTTCATTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715059       <-- GAGATCTTTCATCTTTTTATAAAAAGATGCTAAGATTTCTTTTCTTTTGT  Raphanus sativus var. oleiformis
EV537861       <-- GAGATCTTTCATCTTTTTATAAAAAGATGCTAAGATTTCTTTTCTTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970341       <-- GAGATCTTTCATCTTTTTATAAAAA.........................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX747648       <-- GAGATCTTTCATCTTTTTATAAAAAGATGGTAAGATTTCTTTTCATTTGT  Raphanus raphanistrum subsp. maritimus
EV526940       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD963892       <-- GAGATCTTTCATCTTTTTATAAAAAGATGGTAAGATTTCTTTTCATTTGT  Raphanus raphanistrum subsp. maritimus
EV542012       --> GAGATCTTTCATCTTTTTATAAAAAGATGCTAAGATTTCTTTTCTTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960061       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX751791       --> GAGATCTTTCATCTTTTTATAAAAAGATGGTAAGATTTCTTTTCATTTGT  Raphanus raphanistrum subsp. maritimus
EV531293       --> GAGATCTTTCATCTTTTTATAAAAAGATGGTAAGATTTCTTTTCATTTGT  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN06384        --> CGTTCC
                   ~~~~~~
EW715059       <-- CGTTCC
EV537861       <-- CGTTCC
FD970341       <-- ......
EX747648       <-- CGTTCC
EV526940       <-- ......
FD963892       <-- CGTTCC
EV542012       --> CGTTCC
FD960061       --> ......
EX751791       --> CGTTCC
EV531293       --> CGTTCC