1      -     51
UN06408        --> ATCCACACAGCAATAAACAACTCTTATTATTTTTCCTTAGTTGCTCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ATCCACACAGCAATAAACAACTCTTATTATTTTTCCTTAGTTGCCCACAA
EX886682       <-- ATCCACACAGCAATAAACAACTCTTATTATTTTTCCTTAGTTGCTCACAA
EW717869       <-- tTCCACACAGCAATAAACAACTCTTATTATTTT-CCTTAGTTGCTCACAA
EW715964       <-- .......................................GTTGCTCACAA
EV525987       <-- ..................................................
EV527823       <-- ..................................................
EV551384       <-- ..................................................
FD963280       <-- ..................................................
FD964443       <-- ..................................................
FD535275       <-- ..................................................
FD937907       <-- ..................................................
EV533017       --> ATCCACACAGCAATAAACAACTCTTATTATTTTTCCTTAGTTGCCCACAA
EX891009       --> ATCCACACAGCAATAAACAACTCTTATTATTTTTCCTTAGTTGCTCACAA
FD958722       --> ATCCACACAGCAATAAACAACTCTTATTATTTTTCCTTAGTTGCTCACAA
FD977759       --> ...CACACGGCAATAAACAACTCTTATTATTTTTCCTTAGTTGCTCACAA
EX769221       --> .................CAACTCTTATTATTTTTCCTTAGTTGCTCACAA
FD961110       --> ..................................................
EW719598       --> ..................................................
EV546487       --> ..................................................

               51     -    101
UN06408        --> -------AGAAACGTACGCAGGAAAATATATGATCAAACTGAGTCGATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- -------AGAAACGTACGCAGGAAAATATATGATCAAACTGAGTCGATAC
EX886682       <-- -------AGAAACGTACGCAGGAAAATATATGATCAAACTGAGTCGATAC
EW717869       <-- -------AGAAACGTACGCAGGAAAATATATGATCAAACTGAGTCGATAC
EW715964       <-- -------AGAAACGTACGCAGGAAAATATATGATCAAACTGAGTCGATAC
EV525987       <-- ...............................GATCAAACTGAGTCGATAC
EV527823       <-- ..................................................
EV551384       <-- ..................................................
FD963280       <-- ..................................................
FD964443       <-- ..................................................
FD535275       <-- ..................................................
FD937907       <-- ..................................................
EV533017       --> -------AGAAACGTACGCAGGAAAATATATGATCAAACTGAGTCGATAC
EX891009       --> -------AGAAACGTACGCAGGAAAATATATGATCAAACTGAGTCGATAC
FD958722       --> GTCACAAAGAAACGTACGCAGGAAAATATATGATCAAACTGAGTCGATAC
FD977759       --> -------AGAAACGTACGCAGGAAAATATATGATCAAACTGAGTCGATAC
EX769221       --> -------AGAAACGTACGCAGGAAAATATATGATCAAACTGAGTCGATAC
FD961110       --> ...............ACGCAGGAAAATATATGATCAAACTGAGTCGATAC
EW719598       --> ..................CAGGAAAATATATGATCAAACTGAGTCGATAC
EV546487       --> ..................................................

               101    -    151
UN06408        --> AAATTTTCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- AAATTTTCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAACA  Raphanus raphanistrum subsp. maritimus
EX886682       <-- AAATTTCCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAAGA  Raphanus sativus var. oleiformis
EW717869       <-- AAATTTCCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAACA  Raphanus sativus var. oleiformis
EW715964       <-- AAATTTCCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAACA  Raphanus sativus var. oleiformis
EV525987       <-- AAATTTTCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAACA  Raphanus raphanistrum subsp. maritimus
EV527823       <-- .................GATACGGCAAAGATGGTAAATAAAGACTTAACA  Raphanus raphanistrum subsp. maritimus
EV551384       <-- ...............................GGTAAATAAAGACTTAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD963280       <-- .................................................A  Raphanus raphanistrum subsp. maritimus
FD964443       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD535275       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD937907       <-- ..................................................  Raphanus sativus var. oleiformis
EV533017       --> AAATTTTCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAACA  Raphanus raphanistrum subsp. maritimus
EX891009       --> AAATTTCCGTAAAAACGGATACGGCAAAGATGGGAAATAAAGACTTAAGA  Raphanus sativus var. oleiformis
FD958722       --> AAATTTTCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAACA  Raphanus raphanistrum subsp. maritimus
FD977759       --> AAATTTTCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769221       --> AAATTTTCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961110       --> AAATTTTCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAACA  Raphanus raphanistrum subsp. maritimus
EW719598       --> AAATTTCCGTAAAAACGGATACGGCAAAGATGGTAAATAAAGACTTAACA  Raphanus sativus var. oleiformis
EV546487       --> ...............................GGTAAATAAAGACTTAACA  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN06408        --> GAGTGTGATTAAGTTTACAAGACATGCATACCAAAGCAATCATTCTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- GAGTGTGATTAAGTTTACAAGACACGCATACGAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. maritimus
EX886682       <-- GAGTGTGATTAAGTTTACAAGACATGCATACCAAAGCAATCATTCTCCAC  Raphanus sativus var. oleiformis
EW717869       <-- GAGTGTGATTAAGTTTACAAGACATGCATACCAAAGCAATCATTCTCCAC  Raphanus sativus var. oleiformis
EW715964       <-- GAGTGTGATTAAGTTTACAAGACATGCATACCAAAGCAATCATTCTCCAC  Raphanus sativus var. oleiformis
EV525987       <-- GAGTGTGATTAAGTTTACAAGACATGCATACGAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. maritimus
EV527823       <-- GAGTGTGATTAAGTTTACAAGACATGCATACGAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. maritimus
EV551384       <-- GAGTGTGATTAAGTTTACAAGACATGCATACCAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD963280       <-- GAGTGTGATTAAGTT-ACAAGACATGCATACGAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. maritimus
FD964443       <-- ............agTTACA-GACATGCATACGAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. maritimus
FD535275       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD937907       <-- ..................................................  Raphanus sativus var. oleiformis
EV533017       --> GAGTGTGATTAAGTTTACAAGACACGCATACGAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. maritimus
EX891009       --> GAGTGTGATTAAGTTTACAAGACATGCATACCAAAGCAATCATTCTCCAC  Raphanus sativus var. oleiformis
FD958722       --> GAGTGTGATTAAGTTTACAAGACATGCATACGAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. maritimus
FD977759       --> GAGTGTGATTAAGTTTACAAGACATGCAAACCAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769221       --> GAGTGTGATTAAGTTTACAAGACATGCATACCAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961110       --> GAGTGTGATTAAGTTTACAAGACATGCATACGAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. maritimus
EW719598       --> GAGTGTGATTAAGTTTACAAGACATGCATACCAAAGCAATCATTCTCCAC  Raphanus sativus var. oleiformis
EV546487       --> GAGTGTGATTAAGTTTACAAGACATGCATACCAAAGCAATCATTCTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN06408        --> ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. maritimus
EX886682       <-- ATGCATACTCTCTTTATCGCAGGCCAAGTTTATT-ATAGATCATGTTTCC  Raphanus sativus var. oleiformis
EW717869       <-- ATGCATACTCTCTTTATTGCAGGCCAAGTTTATT-ATAGATCATGTTTCT  Raphanus sativus var. oleiformis
EW715964       <-- ATGCATACTCTCTTTATTGCAGGCCAAGTTTATT-ATAGATCATGTTTCT  Raphanus sativus var. oleiformis
EV525987       <-- ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. maritimus
EV527823       <-- ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. maritimus
EV551384       <-- ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD963280       <-- ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. maritimus
FD964443       <-- ATGCATACTCTCTT-A-TGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. maritimus
FD535275       <-- ........................CAAGTTTATTTATAGACCATGTTTCT  Raphanus raphanistrum subsp. maritimus
FD937907       <-- ..................................................  Raphanus sativus var. oleiformis
EV533017       --> ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. maritimus
EX891009       --> ATGCATACTCTCTTTATCGCAGGCCAAGTTTATT-ATAGATCATGTTTCC  Raphanus sativus var. oleiformis
FD958722       --> ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. maritimus
FD977759       --> ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769221       --> ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961110       --> ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. maritimus
EW719598       --> ATGCATACTCTCTTTATTGCAGGCCAAGTTTATT-ATAGATCATGTTTCT  Raphanus sativus var. oleiformis
EV546487       --> ATGCATACTCTCTTTATTGCAGGCCAAGTTTATTTATAGATCATGTTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN06408        --> TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
EX886682       <-- TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
EW717869       <-- TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
EW715964       <-- TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
EV525987       <-- TTAGAACCAAGAGc....................................
EV527823       <-- TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
EV551384       <-- TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
FD963280       <-- TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
FD964443       <-- TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
FD535275       <-- TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
FD937907       <-- ..................................................
EV533017       --> TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
EX891009       --> TTAAAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
FD958722       --> TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
FD977759       --> TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGT
EX769221       --> TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
FD961110       --> TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
EW719598       --> TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC
EV546487       --> TTAGAACCAAGAGGGAGAGAGAGAGCTCTCTAAGCAGAGGCGTTAACGGC

               301    -    351
UN06408        --> TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- TTTGTTCACGAAGTTATCAACc............................
EX886682       <-- TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
EW717869       <-- TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
EW715964       <-- TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
EV525987       <-- ..................................................
EV527823       <-- TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
EV551384       <-- CTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
FD963280       <-- TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
FD964443       <-- TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
FD535275       <-- TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
FD937907       <-- ...................................CAGGAAGATGGTCGT
EV533017       --> TTTGTTCACGAAGTTATCAACc............................
EX891009       --> TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
FD958722       --> TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
FD977759       --> TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
EX769221       --> TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
FD961110       --> TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
EW719598       --> TTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT
EV546487       --> CTTGTTCACGAAGTTATCAACATATTCTTTCCTTGCAGGAAGATGGTCGT

               351    -    401
UN06408        --> GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..................................................
EX886682       <-- GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
EW717869       <-- GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
EW715964       <-- GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
EV525987       <-- ..................................................
EV527823       <-- GTGGACGATTGTATGGTGTCCACACCGGTTCGCCCACGAAAAGACGCATT
EV551384       <-- GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
FD963280       <-- GTGGAAGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
FD964443       <-- GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
FD535275       <-- GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
FD937907       <-- GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
EV533017       --> ..................................................
EX891009       --> GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
FD958722       --> GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
FD977759       --> GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
EX769221       --> GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
FD961110       --> GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
EW719598       --> GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT
EV546487       --> GTGGACGATTGTATGGTGTCCACACCGGTTCACCCACGAAAAGACGCATT

               401    -    451
UN06408        --> GCCTTGATATAGTTGTCAGAATCCACGGTGAAGCGATGATAAATTCCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX886682       <-- GCCTTGATATAGTTGTCAGAATCCACGGTGAAACGATGATAAATTCCAGC  Raphanus sativus var. oleiformis
EW717869       <-- GCCTTGATATAGTTGTCAGAATCCACGGTGAAACGATGATAAATTCCAGC  Raphanus sativus var. oleiformis
EW715964       <-- GCCTTGATATAGTTGTCAGAATCCACGGTGAAACGATGATAAATTCCAGC  Raphanus sativus var. oleiformis
EV525987       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV527823       <-- GCCTTGATATAGTTGTCAGAATCCACGGTGAAGCGATGATAAATTCCAGC  Raphanus raphanistrum subsp. maritimus
EV551384       <-- GCCTTGATATAGTTGTCAGAATCCACGGTGAAGCGATGATAAATTCCAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD963280       <-- GCCTTGATATAGTTGTCAGAATCCACGGTGAAGCGATGATAAATTCCAGC  Raphanus raphanistrum subsp. maritimus
FD964443       <-- GCCTTGATATAGTTGTCAGAATCCACGGTGAAGCGATGATAAATTCCAGC  Raphanus raphanistrum subsp. maritimus
FD535275       <-- GCCTTGATATAGTTGTCAGAATCCACGGTGAAGCGATGATAAATTCCAGC  Raphanus raphanistrum subsp. maritimus
FD937907       <-- GCCTTGATATAGTTGTCAGAATCCACGGTGAAACGATGATAAATTCCAGC  Raphanus sativus var. oleiformis
EV533017       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX891009       --> GCCTTGATATAGTTGTCAGAATCCACGGTGAAACGATGATAAATTCCAGC  Raphanus sativus var. oleiformis
FD958722       --> GCCTTGATATAGTTGTCAGAATCCACGGCGAAGCGATGATAAATTCCAGC  Raphanus raphanistrum subsp. maritimus
FD977759       --> GCCTTGATATAGTTGTCAGAATCCACGGTGAAGCGATGATAAATTCCAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769221       --> GCCTTGATATAATTGTCAGAATCCACGGTGAAGCGATGATAAATTCCAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961110       --> GCCTTGATATAGTTGTCAGAATCCACGGTGAAGCGATGATAAATTCCAGC  Raphanus raphanistrum subsp. maritimus
EW719598       --> GCCTTGATATAGTTGTCAGAATCCACGGTGAAACGATGATAAATTCCAGC  Raphanus sativus var. oleiformis
EV546487       --> GCCTTGATATAGTTGTCAGAATCCACGGTGAAGCGATGATAAATTCCAGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN06408        --> AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..................................................
EX886682       <-- AGGTAAGACT........................................
EW717869       <-- AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
EW715964       <-- AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
EV525987       <-- ..................................................
EV527823       <-- AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
EV551384       <-- AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
FD963280       <-- AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
FD964443       <-- AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
FD535275       <-- AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
FD937907       <-- AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
EV533017       --> ..................................................
EX891009       --> AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
FD958722       --> AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
FD977759       --> AGGTAAGACTATCATTCCTCCCTTTTTCACCCAAACTCTGATCCAAGCTT
EX769221       --> AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
FD961110       --> AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
EW719598       --> AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT
EV546487       --> AGGTAAGACTATCATTCCTCCCTTCTTCACCCAAACTCTGATCCAAGCTT

               501    -    551
UN06408        --> CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..................................................
EX886682       <-- ..................................................
EW717869       <-- CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
EW715964       <-- CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
EV525987       <-- ..................................................
EV527823       <-- CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
EV551384       <-- CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
FD963280       <-- CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
FD964443       <-- CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
FD535275       <-- CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
FD937907       <-- CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
EV533017       --> ..................................................
EX891009       --> CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCT...............
FD958722       --> CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
FD977759       --> CGTTGCCGTCCCTCACATCAAAGTA-CCACTTCCTGCAACGCAGTAACGG
EX769221       --> CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
FD961110       --> CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
EW719598       --> CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG
EV546487       --> CGTTGCGGTCCCTCACATCAAAGTAGCCACTTCCTGCAACGCAGTAACGG

               551    -    601
UN06408        --> ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTAACTTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX886682       <-- ..................................................  Raphanus sativus var. oleiformis
EW717869       <-- ATCTCTTCATCAGTGTGAAGATGTTCCTCG....................  Raphanus sativus var. oleiformis
EW715964       <-- ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTAACTTTCTC  Raphanus sativus var. oleiformis
EV525987       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV527823       <-- ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTTACTTTCTC  Raphanus raphanistrum subsp. maritimus
EV551384       <-- ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTAACTTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD963280       <-- ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTTACTTTCTC  Raphanus raphanistrum subsp. maritimus
FD964443       <-- ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTTACTTTCTC  Raphanus raphanistrum subsp. maritimus
FD535275       <-- ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTTACTTTCTC  Raphanus raphanistrum subsp. maritimus
FD937907       <-- ATCTCTCCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTAACTTTCTC  Raphanus sativus var. oleiformis
EV533017       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX891009       --> ..................................................  Raphanus sativus var. oleiformis
FD958722       --> ATCTATTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTTACTTTCTC  Raphanus raphanistrum subsp. maritimus
FD977759       --> ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTAACTTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769221       --> ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTAACTTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961110       --> ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTTACTTTCTC  Raphanus raphanistrum subsp. maritimus
EW719598       --> ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTAACTTTCTC  Raphanus sativus var. oleiformis
EV546487       --> ATCTCTTCATCAGTGTGAAGATGTTCCTCGAAAAAGCTCTTAACTTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN06408        --> TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..................................................
EX886682       <-- ..................................................
EW717869       <-- ..................................................
EW715964       <-- TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
EV525987       <-- ..................................................
EV527823       <-- TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
EV551384       <-- TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
FD963280       <-- TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
FD964443       <-- TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
FD535275       <-- TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
FD937907       <-- TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
EV533017       --> ..................................................
EX891009       --> ..................................................
FD958722       --> TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
FD977759       --> TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
EX769221       --> TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
FD961110       --> TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
EW719598       --> TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG
EV546487       --> TTCATAATTTTGAAGCTTCTCAGGGCATACCTCACAGAAGTCCATGTAGG

               651    -    701
UN06408        --> AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGTTTCGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..................................................
EX886682       <-- ..................................................
EW717869       <-- ..................................................
EW715964       <-- AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGTTTCGTAG
EV525987       <-- ..................................................
EV527823       <-- AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGTTTCGTAG
EV551384       <-- AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGTTTCGTAG
FD963280       <-- AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGCTTCGTAG
FD964443       <-- AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGTTTCGTAG
FD535275       <-- AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGTTTCGTAG
FD937907       <-- AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGTTTCGTAG
EV533017       --> ..................................................
EX891009       --> ..................................................
FD958722       --> AGTAACCACGAGAGTCGCGG..............................
FD977759       --> AGTAACCACGAGAGTCGCGGATCTTTTTCTACTCCTCGTCGGTTTCGTAG
EX769221       --> AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGTTTCGTAG
FD961110       --> AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGTTTCGTAG
EW719598       --> AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGTTTCGTAG
EV546487       --> AGTAACCACGAGAGTCGCGGATCTTTTTCAACTCCTCGTCGGTTTCGTAG

               701    -    751
UN06408        --> TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..................................................
EX886682       <-- ..................................................
EW717869       <-- ..................................................
EW715964       <-- TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
EV525987       <-- ..................................................
EV527823       <-- TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
EV551384       <-- TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
FD963280       <-- TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
FD964443       <-- TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
FD535275       <-- TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
FD937907       <-- TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
EV533017       --> ..................................................
EX891009       --> ..................................................
FD958722       --> ..................................................
FD977759       --> TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
EX769221       --> TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
FD961110       --> TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
EW719598       --> TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC
EV546487       --> TGATCAGCATCAAGTCTCCAGCTAAGGACTCCAAGCTCTGCAAGTTTGTC

               751    -    801
UN06408        --> GAGAGAGATAAACTCTTTAGGATCCTTGTGG-TGAGGAAGTCGCTGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX886682       <-- ..................................................  Raphanus sativus var. oleiformis
EW717869       <-- ..................................................  Raphanus sativus var. oleiformis
EW715964       <-- GAGAGAGATAAACTCTCTAGGATCCTTGTGG-TGAGGAAGTCGCTGATCC  Raphanus sativus var. oleiformis
EV525987       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV527823       <-- GAGAGAGATGAACTCTTTAGGATCCTTGTGG-TGAGGAAGTCGCTGATCC  Raphanus raphanistrum subsp. maritimus
EV551384       <-- GAGAGAGAGAAACTCTTTAGGATCCTTGTGG-TGAGGAAGTCGCTGATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD963280       <-- GAGAGAGATGAACTCTTTAGGATCCTTGTGG-TGAGGAAGTCGCTGATCC  Raphanus raphanistrum subsp. maritimus
FD964443       <-- GAGAGAGATGAACTCTTTAGGATCCTTGTGG-TGAGGAAGTCGCTGATCC  Raphanus raphanistrum subsp. maritimus
FD535275       <-- GAGAGAGATGAACTCTTTAGGATCCTTGTGG-TGAGGAAGTCGCTGATCC  Raphanus raphanistrum subsp. maritimus
FD937907       <-- GAGAGAGATAAACTCTCTAGGATCCTTGTGG-TGAGGAAGTCGCTGATCC  Raphanus sativus var. oleiformis
EV533017       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX891009       --> ..................................................  Raphanus sativus var. oleiformis
FD958722       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD977759       --> GAGAGAGATAAACTCT..................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769221       --> GAGAGAGATAAACTCTTTAGGATCCTTGTGGGTGAGGAAGTCGCTGATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961110       --> GAGAGAGATgaa......................................  Raphanus raphanistrum subsp. maritimus
EW719598       --> GAGAGAGATAAACTCTCTAGGATCCTTGTGGGTGAGGAAGTCGCTGATCC  Raphanus sativus var. oleiformis
EV546487       --> GAGAGAGAGAAACTCTTTAGGATCCTTGTGG-TGAGGAAGTCGCTGATCC  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN06408        --> TCTTGGCTATCATCCATGTACCATGCCTGTATCACTTCTTCTCTTCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX886682       <-- ..................................................  Raphanus sativus var. oleiformis
EW717869       <-- ..................................................  Raphanus sativus var. oleiformis
EW715964       <-- TCTTGGCTATCATCCATGTACCATGCCTGTATCACTTCTTCTCTTCCATC  Raphanus sativus var. oleiformis
EV525987       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV527823       <-- TCTTGGCTATCATCCATGTACCATGCCTGTATCACGTCTTCTCTTCCATC  Raphanus raphanistrum subsp. maritimus
EV551384       <-- TCTTGGCTATCATCCATGTACCATGCCTGAATCACTTCTTCTCTTCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD963280       <-- TCTTGGCTATCATCCATGTACCATGCCTGTATCACGTCTTCTCTTCCATC  Raphanus raphanistrum subsp. maritimus
FD964443       <-- TCTTGGCTATCATCCATGTACCATGCCTGTATCACGTCTTCTCTTCCATC  Raphanus raphanistrum subsp. maritimus
FD535275       <-- TCTTGGCTATCATCCATGTACCATGCCTGTATCACGTCTTCTCTTCCATC  Raphanus raphanistrum subsp. maritimus
FD937907       <-- TCTTGGCTATCATCCATGTACCATGCCTGTATCACTTCTTCTCTTCCATC  Raphanus sativus var. oleiformis
EV533017       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX891009       --> ..................................................  Raphanus sativus var. oleiformis
FD958722       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD977759       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769221       --> TCTTGGCTATCATCCATGTACCATGCCTGAATCACTTCT...........  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961110       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW719598       --> TCTTGGCTATCATCCATGTACCATGCCTGTATCACTTCTTCTCTTCCATC  Raphanus sativus var. oleiformis
EV546487       --> TCTTGGCTATCATCCATGTACCATGCCTGAATCACTTCTTCTCTTCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)

               851    -    901
UN06408        --> CTTCACGGCTTCACCCATCGTCGTCTTCGTTATGCGTTTGTTCCCTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..................................................
EX886682       <-- ..................................................
EW717869       <-- ..................................................
EW715964       <-- CTTCACGGCTTCACCCATCGTCGTCTTCGTTATGCGTTTGTTCCCTTCtt
EV525987       <-- ..................................................
EV527823       <-- CTTCACGGCTTCACCCATCGTCGTCTTCGTTATGCGTTTGTTCCCTTCCT
EV551384       <-- CTTCACGGCTTCACCCATCGTCGTCTTCGTTATGCGTTTGTTCCCTTCCT
FD963280       <-- CTTCACGGCTTCACCCATCGTCGTCTTCcc....................
FD964443       <-- CTTCACGGCTTCACCCATCGTCGTCTTCGTTATGCGTTTGTTCCCTTCCT
FD535275       <-- CTTCACGGCTTCACCCATCGTCGTCTTCGTTATGCGTTTGTTCCCTTCCT
FD937907       <-- CTTCACGGCTTCACCCGTCGTCGTCTTCGTTATGCGTTTGTTCCCTTCTT
EV533017       --> ..................................................
EX891009       --> ..................................................
FD958722       --> ..................................................
FD977759       --> ..................................................
EX769221       --> ..................................................
FD961110       --> ..................................................
EW719598       --> CTTCACGGCTTCACCCATCGTCGTCTTCGTTA..................
EV546487       --> CTTCACGGCTTCACCCATCGTCGTCTTCGTTATGCGTTTGTTCCCTTCCT

               901    -    951
UN06408        --> CGTCTCCTCAAAACCACGCGAATCC.....
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529215       <-- ..............................
EX886682       <-- ..............................
EW717869       <-- ..............................
EW715964       <-- ccc...........................
EV525987       <-- ..............................
EV527823       <-- CGTCTCCTCAAAACCACGCGAATagaatcc
EV551384       <-- CGTCTCCTCAAAACCACcc...........
FD963280       <-- ..............................
FD964443       <-- CGTCTCCTCAAAAa................
FD535275       <-- CGTCTCCTCAAAACCACGCGAATCCc....
FD937907       <-- CGTCTCGTCAAAACCACGCGAATCC.....
EV533017       --> ..............................
EX891009       --> ..............................
FD958722       --> ..............................
FD977759       --> ..............................
EX769221       --> ..............................
FD961110       --> ..............................
EW719598       --> ..............................
EV546487       --> CGTCTCCTCAAAACCACcc...........