Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN07505

               1      -     51
UN07505        --> AGCCAAAAAGTGAAACCATAGTCTTTTTATTTGTTGGGGTCCAACACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- AGCCAAAAAGTGAAACCATAGTCTTTTTATTTGTTGGGGTCCAACACAAG
FD946606       <-- .....AAAAGTGAAACCATAGTCTTTTTATTTGTTGGGGTCCAACACAAG
FD948404       <-- .....AAAAGTGAAACCATAGTCTTTTTATTTGTTGGGGTCCAACACAAG
FD938701       <-- .......AAGTGAAACCATAGTCTTTTTATTTGTTGGGGTCCAACACAAG
EW715340       <-- ........gGTGAAACCATAGTCTTTTTATTTGTTGGGGTCCAACACAAG
EW724583       <-- ............................ATTTGTTGGGGTCCAACACAAG
FD535743       <-- ....................................GGGTCCAACACAAG
FD942701       --> .....AAAAGTGAAACCATAGTCTTTTTATTTGTTGGGGTCCAACACAAG
FD944196       --> .....AAAAGTGAAACCATAGTCTTTTTATTTGTTGGGGTCCAACACAAG
FD935011       --> .......AAGTGAAACCATAGTCTTTTTATTTGTTGGGGTCCAACACAAG
EW719964       --> ..................................................

               51     -    101
UN07505        --> TGTGAACATGTCTAAAAGCCAAATAAGTT-GAACATGTGTTGGCTTGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- TGTGAACATGTCTAAAAGCCAAATAAGTTTGAACATGTGTTGGCTTGGAT
FD946606       <-- TGTGAACATGTCTAAAAGCCAAATAAGTT-GAACATGTGTTGGCTTGGAT
FD948404       <-- TGTGAACATGTCTAAAAGCCAAATAAGTT-GAACATGTGTTGGCTTGGAT
FD938701       <-- TGTGAACATGTCTAAAAGCCAAATAAGTT-GAACATGTGTTGGCTTGGAT
EW715340       <-- TGTGAACATGTCTAAAAGCCAAATAAGTT-GAACATGTGTTGGCTTGGAT
EW724583       <-- TGTGAACATGTCTAAAAGCCAAATAAGTT-GAACATGTGTTGGCTTGGAT
FD535743       <-- TGTGAACATGTCTAAAAGCCAAATAAGTTTGAACATGTGTTGGCTTGGAT
FD942701       --> TGTGAACATGTCTAAAAGCCAAATAAGTT-GAACATGTGTTGGCTTGGAT
FD944196       --> TGTGAACATGTCTAAAAGCCAAATAAGTT-GAACATGTGTTGGCTTGGAT
FD935011       --> TGTGAACATGTCTAAAAGCCAAATAAGTT-GAACATGTGTTGGCTTGGAT
EW719964       --> ..................................................

               101    -    151
UN07505        --> ACATTGTGTAATATGCCTTATTATTACAGAAAATTATTAGTTGAATTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- ACATTGTGTAATATGCCTTATTATTACAGAAAATTATTAGTTGAATTATA
FD946606       <-- ACATTGTGTAATATGCCTTATTATTACAGAAAATTATTAGTTGAATTATA
FD948404       <-- ACATTGTGTAATATGCCTTATTATTACAGAAAATTATTAGTTGAATTATA
FD938701       <-- ACATTGTGTAATATGCCTTATTATTACAGAAAATTATTAGTTGAATTATA
EW715340       <-- ACATTGTGTAATATGCCTTATTATTACAGAAAATTATTAGTTGAATTATA
EW724583       <-- ACATTGTGTAATATGCCTTATTATTACAGAAAATTATTAGTTGAATTATA
FD535743       <-- ACATTGTGTAATATGCCTTATTATTACAGAAAATTATTAGTTGAATTATA
FD942701       --> ACATTGTGTAATATGCCTTATTATTACAGAAAATTATTAGTTGAATTATA
FD944196       --> ACATTGTGTAATATGCCTTATTATTACAGAAAATTATTAGTTGAATTATA
FD935011       --> ACATTGTGTAATATGCCTTATTATTACAGAAAATTATTAGTTGAATTATA
EW719964       --> ..................................................

               151    -    201
UN07505        --> AAGGGTTAATGATAAACTATGAGTTTTGTTGAAAAGAAGTTAAATATCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- AAGGGTTAATGATAAACTATGAGTTTTGTTGAAAAGAAGTTAAATATCGG
FD946606       <-- AAGGGTTAATGATAAACTATGAGTTTTGTTGAAAAGAAGTTAAATATCGG
FD948404       <-- AAGGGTTAATGATAAACTATGAGTTTTGTTGAAAAGAAGTTAAATATCGG
FD938701       <-- AAGGGTTAATGATAAACTATGAGTTTTGTTGAAAAGAAGTTAAATATCGG
EW715340       <-- AAGGGTTAATGATAAACTATGAGTTTTGTTGAAAAGAAGTTAAATATCGG
EW724583       <-- AAGGGTTAATGATAAACTATGAGTTTTGTTGAAAAGAAGCTAAATATCGG
FD535743       <-- AAGGGTTAATGATAAACTATGAATTT-GTTGAAAAGAAGTTAAATATCGG
FD942701       --> AAGGGTTAATGATAAACTATGAGTTTTGTTGAAAAGAAGTTAAATATCGG
FD944196       --> AAGGGTTAATGATAAACTATGAGTTTTGTTGAAAAGAAGTTAAATATCGG
FD935011       --> AAGGGTTAATGATAAACTATGAGTTTTGTTGAAAAGAAGTTAAATATCGG
EW719964       --> ..................................................

               201    -    251
UN07505        --> CAGGAGGATGCCCAGGCATGCTTGGACAGGTTGTTTTGTTAGGATTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- CAGGAGGATGCCCAGGCATGCTTGGACAGGTTGTTTTGTTAGGATTCTTA
FD946606       <-- CAGGAGGATGCCCAGGCATGCTTGGACAGGTTGTTTTGTTAGGATTCTTA
FD948404       <-- CAGGAGGATGCCCAGGCATGCTTGGACAGGTTGTTTTGTTAGGATTCTTA
FD938701       <-- CAGGAGGATGCCCAGGCATGCTTGGACAGGTTGTTTTGTTAGGATTCTTA
EW715340       <-- CAGGAGGATGCCCAGGCATGCTTGGACAGGTTGTTTTGTTAGGATTCTTA
EW724583       <-- CAGGAGGATGCCCAGGCATGCTTGGACAGGTTGTTTTGTTAGGATTCTTA
FD535743       <-- CAGGAGGATGCCCAGGCATGCTTGGACAGGTTGTTTTGTTAGGATTCTTA
FD942701       --> CAGGAGGATGCCCAGGCATGCTTGGACAGGTTGTTTTGTTAGGATTCTTA
FD944196       --> CAGGAGGATGCCCAGGCATGCTTGGACAGGTTGTTTTGTTAGGATTCTTA
FD935011       --> CAGGAGGATGCCCAGGCATGCTTGGACAGGTTGTTTTGTTAGGATTCTTA
EW719964       --> .........................ACAGGTTGTTTTGTTAGGATTCTTA

               251    -    301
UN07505        --> TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT
FD946606       <-- TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT
FD948404       <-- TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT
FD938701       <-- TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT
EW715340       <-- TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT
EW724583       <-- TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT
FD535743       <-- TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT
FD942701       --> TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT
FD944196       --> TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT
FD935011       --> TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT
EW719964       --> TTGTCCAAAGGGTTCTTGTTCTTATACTCATTGTTCTTGTTGTCATTGTT

               301    -    351
UN07505        --> CATCCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- CATTCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT
FD946606       <-- CATCCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT
FD948404       <-- CATCCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT
FD938701       <-- CATCCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT
EW715340       <-- CATCCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT
EW724583       <-- CATCCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT
FD535743       <-- CATTCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT
FD942701       --> CATCCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT
FD944196       --> CATCCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT
FD935011       --> CATCCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT
EW719964       --> CATCCCCAATTTGTTCTTCACTGCCTCTGATGCTTCTTGTGCCATGTTCT

               351    -    401
UN07505        --> TCACTTGCTCTCCTTTCTCCTGGAGAAAGCTAGATGCTTGAGAAGAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- TCACTTGCTCTCCTTTCTCCTGGAGAAAGCTAGATGCTTGAGAAGAGTTG  Raphanus raphanistrum subsp. maritimus
FD946606       <-- TCACTTGCTCTCCTTTCTCCTGGAGAAAGCTAGATGATTGAGAAGAGTTG  Raphanus sativus cv Early Scarlet Globe
FD948404       <-- TCACTTGCTCTCCTTTCTCCTGGAGAAAGCTAGATGCTTGAGAAGAGTTG  Raphanus sativus cv Early Scarlet Globe
FD938701       <-- TCACTTGCTCTCCTTTCTCCTGGAGAAAGCTTGATGCTTGAGAAGAGTTG  Raphanus sativus var. oleiformis
EW715340       <-- TCACTTGCTCTCCTTTCTCCTGGAGGAAGCTTGATGCTTGAGAAGAGTTG  Raphanus sativus var. oleiformis
EW724583       <-- TCACTTGCTCTCCTTTCTCCTGGAGAAAGCTAGATGCTTGAGAAGAGTTG  Raphanus sativus cv Early Scarlet Globe
FD535743       <-- TCACTTGCTCTCCTTTCTCCTGGAGAAAGCTAGATGCTTGAGAAGAGTTG  Raphanus raphanistrum subsp. maritimus
FD942701       --> TCACTTGCTCTCCTTTCTCCTGGAGAAAGCTAGATGATTGAGAAGAGTTG  Raphanus sativus cv Early Scarlet Globe
FD944196       --> TCACTTGCTCTCCTTTCTCCTGGAGAAAGCTAGATGCTTGAGAAGAGTTG  Raphanus sativus cv Early Scarlet Globe
FD935011       --> TCACTTGCTCTCCTTTCTCCTGGAGAAAGCTTGATGCTTGAGA.......  Raphanus sativus var. oleiformis
EW719964       --> TCACTTGCTCTCCTTTCTCCTGGAGGAAGCTTGATGCTTGAGAAGAGTTG  Raphanus sativus var. oleiformis

               401    -    451
UN07505        --> GTGTTGTCTGCTTTGCATTCAGCCCTCTTCACATGTGCTTGGCCCACGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- GTGTTGTCTGCTTTGCATTCAGCCCTCTTCACATGTGCTTGGCCCACGAT
FD946606       <-- GTGTTGTCTGCTTTGCATTCAGCCCTCTTCACATGTGCTTGGCCCACGAT
FD948404       <-- GTGTTGTCTGCTTTGCATTCAGCCCTCTTCACATGTGCTTGGCCCACGAT
FD938701       <-- GTGTTGTCTGCTTTGCATTCAGCCCTCTTCACATGTGCTTGGCCCACGAT
EW715340       <-- GTGTTGTCTGCTTTGCATTCAGCCCTCTTCACATGTGCTTGGCCCACGAT
EW724583       <-- GTGTTGTCTGCTTTGCATTCAGCCCTCTTCACATGTGCTTGGCCCACGAT
FD535743       <-- GTGTTGTCTGCTTTGCATTCAGCCCTCTTCACATGTGCTTGGCCCACGAT
FD942701       --> GTGTTGTCTGCTTTGCATTCAGCCCTCTTCACATGTGCTTGGCCCACGAT
FD944196       --> GTGTTGTCTGCTTTGCATTCAGCCCTCTTCACATGTGCTTGGCCCACGAT
FD935011       --> ..................................................
EW719964       --> GTGTTGTCTGCTTTGCATTCAGCCCTCTTCACATGTGCTTGGCCCACGAT

               451    -    501
UN07505        --> TTGGCCGGCTCTCACACTGAATTCCTCATCCTGTCTGCTCGCCATTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- TTGGCCGGCTCTCACACTGAATTCCTCATCCTGTCTGCTCGCCATTTCTT
FD946606       <-- TTGGCCGGCTCTCACACTGAATTCCTCATCCTGTCTGCTCGCCATTTCTT
FD948404       <-- TTGGCCGGCTCTCACACTGAATTCCTCATCCTGTCTGC-CGCCATTTCTT
FD938701       <-- TTGGCCGGCCCTCACGCTGAATTCCTCATCCTGTCTGCTCGCCATTTCTT
EW715340       <-- TTGGCCGGCCCTCACACTGAATTCCTCATCCTGTCTGCTCGCCATTTCTT
EW724583       <-- TTGGCCGGCTCTCACACTGAATTCCTCATCCTGTCTGCTCGCCATTTCCT
FD535743       <-- TTGGCCGGCTCTCACACTGAATTCCTCATCCTGTCTGCTCGCCATTTCTT
FD942701       --> TTGG..............................................
FD944196       --> TTGGCCGGCTCTCACACTGAATTCCTCATCCTGTCTGC-CGCCATTTCTT
FD935011       --> ..................................................
EW719964       --> TTGGCCGGCCCTCACACTGAATTCCTCATCCTGTCTGCTCGCCATTTCTT

               501    -    551
UN07505        --> ACTAAATTATTCTCCTTTCTCGTCAAACAACGTCATCTTATAAAACATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- ACTAAATTccc.......................................  Raphanus raphanistrum subsp. maritimus
FD946606       <-- ACTAAATTATTCTCCTTTCTTGTCAAACAACGTCATCTTATAAAACATTT  Raphanus sativus cv Early Scarlet Globe
FD948404       <-- ACTccc............................................  Raphanus sativus cv Early Scarlet Globe
FD938701       <-- ACT-TGTTATTCTCCTTTCTCGTCAAACAACGTCcc..............  Raphanus sativus var. oleiformis
EW715340       <-- ACT-TGTTATTCTCCTTTCTCGTCAAACAACGTCcc..............  Raphanus sativus var. oleiformis
EW724583       <-- ACTAAATTATTCTCC...................................  Raphanus sativus cv Early Scarlet Globe
FD535743       <-- ACTAAActcc........................................  Raphanus raphanistrum subsp. maritimus
FD942701       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD944196       --> ACTccc............................................  Raphanus sativus cv Early Scarlet Globe
FD935011       --> ..................................................  Raphanus sativus var. oleiformis
EW719964       --> ACT-TGTTATTCTCCTTTCTCGTCAAACAACGTCcc..............  Raphanus sativus var. oleiformis

               551    -    601
UN07505        --> GTTCTTCTATATATTTGATGGTGTTCCATTTCTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746352       <-- ....................................
FD946606       <-- GTTCTTCTATATATTTGATGGTGTTCCATTTCTCCC
FD948404       <-- ....................................
FD938701       <-- ....................................
EW715340       <-- ....................................
EW724583       <-- ....................................
FD535743       <-- ....................................
FD942701       --> ....................................
FD944196       --> ....................................
FD935011       --> ....................................
EW719964       --> ....................................