1      -     51
UN07509        --> GAATATAGAAAGAATTGCTTAAATAACTCAGCGATCTAAAATCATAGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- GAATATAGAAAGAATTGCTTAAATAACTCAGCGATCTAAAATCATAGTCA
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> GAATATAGAAAGAATTGCTTAAATAACTCAGCGATCTAAAATCATAGTCA
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               51     -    101
UN07509        --> CGATCTACTAAAAGTCAAGTTGAGCACCCGGACCAGAGGTGGCCGAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- CGATCTACTAAAAGTCAAGTTGAGCACCCGGACCAGAGGTGGCCGAGAAT
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> CGATCTACTAAAAGTCAAGTTGAGCACCCGGACCAGAGGTGGCCGAGAAT
FY436200       --> ...........AAGTCAAGTTGAGCACCCGGACCAGAGGTGGCCGAGAAT
FY439864       --> ...........AAGTCAAGTTGAGCACCCGGACCAGAGGTGGCCGAGAAT
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               101    -    151
UN07509        --> CTTATGTCAAAAGGACTAACGACGATGAAAGAGGAGAAGGAGGAGTAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- CTTATGTCAAAAGGACTAACGACGATGAAAGAGGAGAAGGAGGAGTAGGA
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> CTTATGTCAAAAGGACTAACGACGATGAAAGAGGAGAAGGAGGAGTAGGA
FY436200       --> CTTATGTCAAAAGGACTAACGACGATGAAAGAGGAGAAGGAGGAGTAGGA
FY439864       --> CTTATGTCAAAAGGACTAACGACGATGAAAGAGGAGAAGGAGGAGTAGGA
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               151    -    201
UN07509        --> GGAGTCAGACGGAATCAAATGATTACGAGATAGACAATGAGACCAGGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- GGAGTCAGACGGAATCAAATGATTACGAGATAGACAATGAGACCAGGGAG
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> GGAGTCAGACGGAATCAAATGATTACGAGATAGACAATGAGACCAGGGAG
FY436200       --> GGAGTCAGACGGAATCAAATGATTACGAGATAGACAATGAGACCAGGGAG
FY439864       --> GGAGTCAGACGGAATCAAATGATTACGAGATAGACAATGAGACCAGGGAG
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               201    -    251
UN07509        --> AGCAAGAGCACTTAGTCAATTCACTTTGAGTACAGGAAAGTCTGCTGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- AGCAAGAGCACTTAGTCAATTCACTTTGAGTACAGG..............
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> AGCAAGAGCACTTAGTCAATTCACTTTGAGTACAGG..............
FY436200       --> AGCAAGAGCACTTAGACAATTCACTTTGAGTACAGGAAAGTCTGCTGGTA
FY439864       --> AGCAAGAGCACTTAGACAATTCACTTTGAGTACAGGAAAGTCTGCTGGTA
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               251    -    301
UN07509        --> GGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGCTCGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> GGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGCTCGAAG
FY439864       --> GGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGCTCGAAG
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               301    -    351
UN07509        --> CGATTGCTGCGAAGAATTGATCTGAAACGAAGCACTTCCTCTATGGGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> CGATTGCTGCGAAGAATTGATCTGAAACGAAGCACTTCCTCTATGGGCAT
FY439864       --> CGATTGCTGCGAAGAATTGATCTGAAACGAAGCACTTCCTCTATGGGCAT
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               351    -    401
UN07509        --> TGTAGAGAGTATAGAATATGACCCTAATCGTTCTTCTCAGATCGCTCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> TGTAGAGAGTATAGAATATGACCCTAATCGTTCTTCTCAGATCGCTCCAG
FY439864       --> TGTAGAGAGTATAGAATATGACCCTAATCGTTCTTCTCAGATCGCTCCAG
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               401    -    451
UN07509        --> TACGATGGATCAAGGGGGGCTGCCAGAAAAAAATGAACACGATCGAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> TACGATGGATCAAGGGGGGCTGCCAGAAAAAAATGAACACGATCGAGGAG
FY439864       --> TACGATGGATCAAGGGGGGCTGCCAGAAAAAAATGAACACGATCGAGGAG
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               451    -    501
UN07509        --> TTAGCTCCGCCGCGCAAGATCCTCGAACCTACCACGAACACCATCAGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> TTAGCTCCGCCGCGCAAGATCCTCGAACCTACCACGAACACCATCAGCGG
FY439864       --> TTAGCTCCGCCGCGCAAGATCCTCGAACCTACCACGAACACCATCAGCGG
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               501    -    551
UN07509        --> CCTCTTTTCGTTCTCTTTCCTGCCCGGGAAGGTGGATCAAAGAAAGGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ............................AAGGTGGATCAAAGAAAGGTAG
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> CCTCTTTTCGTTCTCTTTCCTGCCCGGGAAGGTGGATCAAAGAAAGGTAG
FY439864       --> CCTCTTTTCGTTCTCTTTCCTGCCCGGGAAGGTGGATCAAAGAAAGGTAG
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               551    -    601
UN07509        --> CTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGGCCTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- CTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGGCCTTCCT
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> CTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGGCCTTCCT
FY439864       --> CTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGGCCTTCCT
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ..................................................
EY899090       --> ..................................................

               601    -    651
UN07509        --> ACCGGAATGCCTCCTTTGTCTTCGTATAAGAGCGCCTTTGCTAGTAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ACCGGAATGCCTCCTTTGTCTTCGTATAAGAGCGCCTTTGCTAGTAAGGA
EX892699       <-- ..........gTCCTTTGTCTTCGTATAAGAGCGCCTTTGCTAGTAAGGA
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ACCGGAATGCCTCCTTTGTCTTCGTATAAGAGCGCCTTTGCTAGTAAGGA
FY439864       --> ACCGGAATGCCTCCTTTGTCTTCGTATAAGAGCGCCTTTGCTAGTAAGGA
EX888832       --> ..........gTCCTTTGTCTTCGTATAAGAGCGCCTTTGCTAGTAAGGA
EY930745       --> ..........gTCCTTTGTCTTCGTATAAGAGCGCCTTTGCTAGTAAGGA
EX765511       --> ..................................................
EY899090       --> ..................................................

               651    -    701
UN07509        --> CGCAGGAAGCACAAAAACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- CGCAGGAAGCACAAAAACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCT
EX892699       <-- CGCAGGAAGCACAAAAACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCT
EY926867       <-- ....................................CTTCTCTGCCTTCT
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> CGCAGGAAGCACAAAAACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCT
FY439864       --> CGCAGGAAGCACAAAAACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCT
EX888832       --> CGCAGGAAGCACAAAAACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCT
EY930745       --> CGCAGGAAGCACAAAAACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCT
EX765511       --> ..................................................
EY899090       --> ..................................................

               701    -    751
UN07509        --> CCTCTCCAAAGGCCAAGAGAGAGACTGCATCCCTTGCCTTCGCTAGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- CCTCTCCAAAGGCCAAGAGAGAGACTGCATCCCTTGCCTTCGCTAGCTCT
EX892699       <-- CCTCTCCAAAGGCCAAGAGAGAGACTGCATCCCTTGCCTTCGCTAGCTCT
EY926867       <-- CCTCTCCAAAGGCCAAGAGAGAGACTGCATCCCTTGCCTTCGCTAGCTCT
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> CCTCTCCAAAGGCCAAGAGAGAGACTGCATCCCTTGCCTTCGCTAGCTCT
FY439864       --> CCTCTCCAAAGGCCAAGAGAGAGACTGCATCCCTTGCCTTCGCTAGCTCT
EX888832       --> CCTCTCCAAAGGCCAAGAGAGAGACTGCATCCCTTGCCTTCGCTAGCTCT
EY930745       --> CCTCTCCAAAGGCCAAGAGAGAGACTGCATCCCTTGCCTTCGCTAGCTCT
EX765511       --> ..................................................
EY899090       --> ..................................................

               751    -    801
UN07509        --> TTTGGTTTCCCAAGGATAGCGGTAGCTGGGGTTCCTACCGCTTTCTTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- TTTGGTTTCCCAAGGATAGCGGTAGCTGGGGTTCCTACCGCTTTCTTCGC
EX892699       <-- TTTGGTTTCCCAAGGATAGCGGTAGCTGGGGTTCCTACCGCTTTTTTCGC
EY926867       <-- TTTGGTTTCCCAAGGATAGCGGTAGCTGGGGTTCCTACCGCTTTCTTCGC
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> TTTGGTTTCCCAAGGATAGCGGTAGCTGGGGTTCCTACCGCTTTCTTCGC
FY439864       --> TTTGGTTTCCCAAGGATAGCGGTAGCTGGGGTTCCTACCGCTTTCTTCGC
EX888832       --> TTTGGTTTCCCAAGGATAGCGGTAGCTGGGGTTCCTACCGCTTTCTTCGC
EY930745       --> TTTGGTTTCCCAAGGATAGCGGTAGCTGGGGTTCCTACCGCTTTCTTCGC
EX765511       --> ..................................................
EY899090       --> ..................................................

               801    -    851
UN07509        --> TCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTTTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- TCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTTTGCG
EX892699       <-- TCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTTTGCG
EY926867       <-- TCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTTTGCG
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> TCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTC........
FY439864       --> TCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTTTGCG
EX888832       --> TCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTTTGCG
EY930745       --> TCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTTTGCG
EX765511       --> ..................................................
EY899090       --> ..................................................

               851    -    901
UN07509        --> AGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- AGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAA
EX892699       <-- AGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAA
EY926867       <-- AGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAA
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> AGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAA
EX888832       --> AGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAA
EY930745       --> AGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAA
EX765511       --> ..................................................
EY899090       --> ..................................................

               901    -    951
UN07509        --> GGTAAAGCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- GGTAAAGCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGG
EX892699       <-- GGTAAAGCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGG
EY926867       <-- GGTAAAGCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGG
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> GGTAAAG...........................................
EX888832       --> GGTAAAGCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGG
EY930745       --> GGTAAAGCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGG
EX765511       --> ..............................gGGCGGCAAGATACTTTAGG
EY899090       --> ..................................................

               951    -   1001
UN07509        --> GCTTGTTGGAGCTGCTGGGCATAACAAATCGAAGCCGAAGACGGATCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- GCTTGTTGGAGCTGCTGGGCATAACAAATCGAAGCCGAAGACGGATCAAG
EX892699       <-- GCTTGTTGGAGCTGCTGGGCATAACAAATCGAAGCCGAAGACGGATCAAG
EY926867       <-- GCTTGTTGGAGCTGCTGGGCATAACAAATCGAAGCCGAAGACGGATCAAG
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> GCTTGTTGGAGCTGCTGGGCATAACAAATCGAAGCCGAAGACGGATCAAG
EY930745       --> GCTTGTTGGAGCTGCTGGGCATAACAAATCGAAGCCGAAGACGGATCAAG
EX765511       --> GCTTGTTGGAGCTGCTGGGCATAACAAATCGAAGCCGAAGACGGATCAAG
EY899090       --> ..................................................

               1001   -   1051
UN07509        --> GTAGCTTGCCTGCCAAGCCGATAGGCGAAAGGGCGAAGCAACTCAAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- GTAGCTTGCCTGCCAAGCCGATAGGCGAAAGGGCGAAGCAACTCAAAGCT
EX892699       <-- GTAGCTTGCCTGCCAAGCCGATAGGCGAAAGGGCGAAGCAACTCAAAGCT
EY926867       <-- GTAGCTTGCCTGCCAAGCCGATAGGCGAAAGGGCGAAGCAACTCAAAGCT
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> GTAGCTTGCCTGCCAAGCCGATAGGCGAAAGGGCGAAGCAACTCAAAGCT
EY930745       --> GTAGCTTGCCTGCCAAGCCGATAGGCGAAAGGGCGAAGCAACTCAAAGCT
EX765511       --> GTAGCTTGCCTGCCAAGCCGATAGGCGAAAGGGCGAAGCAACTCAAAGCT
EY899090       --> ..................................................

               1051   -   1101
UN07509        --> CTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAAGTCGATCGTGCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- CTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAGGTCGATCGTGCACC
EX892699       <-- CTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAAGTCGATCGTGCACC
EY926867       <-- CTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAAGTCGATCGTGCACC
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> CTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAAGTCGATCGTGCACC
EY930745       --> CTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAAGTCGATCGTGCACC
EX765511       --> CTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAAGTCGATCGTGCACC
EY899090       --> ..................................................

               1101   -   1151
UN07509        --> TGTCACTTATATAATAGCCAGTCATCAATTAGAAGCAGGCAAAATGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944484       <-- TGTCACTTATATAATAGCCAGTCATCAATTAGAAGCAGGCAAAATGGTGA  Raphanus sativus cv Early Scarlet Globe
EX892699       <-- TGTCACTTATATAATAGCCAGTCATCAATTAGAAGCAGGCAAAATGGTGG  Raphanus sativus var. oleiformis
EY926867       <-- TGTCACTTATATAATAGCCAGTCATCAATTAGAAGCAGGCAAAATGGTGG  Raphanus sativus var. oleiformis
EY894948       <-- .................................gGCAGGCAAAATGGTGA  Raphanus raphanistrum subsp. maritimus
FD550576       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY436200       --> ..................................................  Raphanus sativus cv GSK3-1
FY439864       --> ..................................................  Raphanus sativus cv GSK3-1
EX888832       --> TGTCACTTATATAATAGCCAGTCATCAATTAGAAGCAG-CAAAATGGTGG  Raphanus sativus var. oleiformis
EY930745       --> TGTCACTTATATAATAGCCAGTCATCAATTAGAAGCAGGCAAAATGGTGG  Raphanus sativus var. oleiformis
EX765511       --> TGTCACTTATATAATAGCCAGTCATCAATTAGAAGCAGGCAAAATGGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY899090       --> .................................gGCAGGCAAAATGGTGA  Raphanus raphanistrum subsp. maritimus

               1151   -   1201
UN07509        --> TGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- TGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC
EX892699       <-- TGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC
EY926867       <-- TGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC
EY894948       <-- TGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> TGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC
EY930745       --> TGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC
EX765511       --> TGAATTGCGATTGATCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC
EY899090       --> TGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC

               1201   -   1251
UN07509        --> CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGAAGAACGGGGCAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGAAGAACGGGGCAGTC
EX892699       <-- CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGAAGAACGGGGCAGTC
EY926867       <-- CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGAAGAACGGGGCAGTC
EY894948       <-- CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGAAGAACGGGGCAGTC
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGAAGAACGGGGCAGTC
EY930745       --> CAGAATGACCATtc....................................
EX765511       --> CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGAAGAACGGGGCAGTC
EY899090       --> CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGAAGAACGGGGCAGTC

               1251   -   1301
UN07509        --> CGCTGGAGTGTAGGCTTCTTGGCCACGCCCCCTGCTTATAGATACGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- CGCTGGAGTGTAGGCTTCTTGACCACGCCCCCTGCTTATAGATACGg...
EX892699       <-- CGCTGGAGTGTAGGCTTCTTGGCCACGCCCCCTGCTTATAGATACG....
EY926867       <-- CGCTGGAGTGTAGGCTTCTTGGCCACGCCCCCTGCTTATAGATACG....
EY894948       <-- CGCTGGAGTGTAGGCTTCTTGGCCGCGCCCCCTGCTTATAGATACG....
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> CGCTGGAGTGTAGctctg................................
EY930745       --> ..................................................
EX765511       --> CGCTGGAGTGTAGGCTTCTTGGCCACGCCCCCTGCTTATAGATACGAAAT
EY899090       --> CGCTGGAGTGTAGGCTTCTTGGCCGCGCCCCCTGCTTATAGATACG....

               1301   -   1351
UN07509        --> ACTTGAGATAAATTATCAAATAGGAAATTGCATACCATTAGCCGATATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> ACTTGAGATAAATTATCAAATAGGAAATTGCATACCATTAGCCGATATAC
EY899090       --> ..................................................

               1351   -   1401
UN07509        --> GTATAGGAACATGGGTACATGAACCCTATAAAATCCTTTACTTTTAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> GTATAGGAACATGGGTACATGAACCCTATAAAATCCTTTACTTTTAGCTT
EY899090       --> ..................................................

               1401   -   1451
UN07509        --> TGAATTACTTATATATCTTATGAATTTTATTTCGCATTGGAAACGATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> TGAATTACTTATATATCTTATGAATTTTATTTCGCATTGGAAACGATTCT
EY899090       --> ..................................................

               1451   -   1501
UN07509        --> AGGAGAAGTTCGAATCCGTTCCGTTTGGATATTGATCGGTCTTGGTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> AGGAGAAGTTCGAATCCGTTCCGTTTGGATATTGATCGGTCTTGGTTTGA
EY899090       --> ..................................................

               1501   -   1551
UN07509        --> CATGGTTTACGTGTTACTGGTTTTCGGAAGAGTTAATATTCCTATTAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> CATGGTTTACGTGTTACTGGTTTTCGGAAGAGTTAATATTCCTATTAGCG
EY899090       --> ..................................................

               1551   -   1601
UN07509        --> TTACCCTTTCTTACCCTGCCTTTTGACTCGTATTTTGTTTGTACACAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> TTACCCTTTCTTACCCTGCCTTTTGACTCGTATTTTGTTTGTACACAATT
EY899090       --> ..................................................

               1601   -   1651
UN07509        --> AACGGAGCCTTTTCGACATTTGTTGCAACGTCTTCAATAGCATGCTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> AACGGAGCCTTTTCGACATTTGTTGCAACGTCTTCAATAGCATGCTCTTA
EY899090       --> ..................................................

               1651   -   1701
UN07509        --> TTTCGTCTTTCCTTTAATAAGTTATCAAATTTGGTGCCTTTTGATCCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- ..................................................
FD944484       <-- ..................................................
EX892699       <-- ..................................................
EY926867       <-- ..................................................
EY894948       <-- ..................................................
FD550576       --> ..................................................
FY436200       --> ..................................................
FY439864       --> ..................................................
EX888832       --> ..................................................
EY930745       --> ..................................................
EX765511       --> TTTCGTCTTTCCTTTAATAAGTTATCAAATTTGGTGCCTTTTGATCCCCA
EY899090       --> ..................................................

               1701   -   1751
UN07509        --> GTTGCTATGGAGACAAGACGAAATACATCGATTTTCTATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD546513       <-- .........................................
FD944484       <-- .........................................
EX892699       <-- .........................................
EY926867       <-- .........................................
EY894948       <-- .........................................
FD550576       --> .........................................
FY436200       --> .........................................
FY439864       --> .........................................
EX888832       --> .........................................
EY930745       --> .........................................
EX765511       --> GTTGCTATGGAGACAAGACGAAATACATCGATTTTCTATTA
EY899090       --> .........................................