1      -     51
UN07518        --> GGATACATCTTCTAATAATCCTCCTTGAATTTTATAACAAATAAGTAA-G
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572342       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY919564       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD547899       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547510       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983733       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV547733       --> GGATACATCTTCTAATAATCCTCCTTGAATTTTATAACAAATAAGTAA-G  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551655       --> GGATACATCTTCTAATAATCCTCCTTGAATTTTATAACAAATAAGTAA-G  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552066       --> .GATACATCTTCTAATAATCCTCCTTGAATTTTATAACAAATAAGTAA-G  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939360       --> agacACATCTTCTAATAATCCTCTTTGAATTTTATAACAAATAAGTAC-G  Raphanus sativus cv Early Scarlet Globe
EY940328       --> ..ggACATCTTCTAATAATCCTCTTTGAATTTTATAACAAATAAGTAC-G  Raphanus sativus cv Early Scarlet Globe
FD970936       --> .gacACATCTTCTAATAATCCTCCTTGAATTTTATAACAAATAAGTAC-G  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987745       --> ..ggACATCTTCTAATAATCCTCCTTGAATTTTATAACAAATAAGTAAAG  Raphanus raphanistrum subsp. landra
EV567390       --> ..................................................  Raphanus raphanistrum subsp. landra
EY923822       --> ..................................................  Raphanus raphanistrum subsp. landra

               51     -    101
UN07518        --> ATAAAATGGATTCAAGATTCAACGATACCGTTCCTTCCCTGAGGTATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..................................................
EV572342       <-- ..................................................
EY919564       <-- ..................................................
FD547899       <-- ..................................................
FD547510       <-- ..................................................
FD983733       <-- ..................................................
EV547733       --> ATAAAATGGATTCAAGATTCAACGATACCGTTCCTTCCCTGAGGTATATT
FD551655       --> ATAAAATGGATTCAAGATTCAACGATACCGTTCCTTCCCTGAGGTATATT
FD552066       --> ATAAAATGGATTCAAGATTCAACGATACCGTTCCTTCCCTGAGGTATATT
EY939360       --> ATAAAATGGATTCAAGATTCAACGATACCGTTCCTTCCCTGAGGTATATT
EY940328       --> ATAAAATGGATTCAAGATTCAACGATACCGTTCCTTCCCTGAGGTATATT
FD970936       --> ATAAAATGGATTCAAGATTCAACGATACCGTTCCTTCCCTGAGGTATATT
FD987745       --> ATAAAATGGATTCAAGATTCAACGATACCGTTCCTTCC-TGAGGTATATT
EV567390       --> ..................................................
EY923822       --> ..................................................

               101    -    151
UN07518        --> GATGAAAAGAGTGACGATGAATATGCATTTATGAAAGCTTTACGTATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572342       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY919564       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD547899       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547510       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983733       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV547733       --> GATGAAAAGAGTGACGATGAATATGCATTTATGAAAGCTTTATGTATGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551655       --> GATGAAAAGAGTGACGATGAATATGCATTTATGAAAGCTTTACGTATGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552066       --> GATGAAAAGAGTGACGATGAATATGCATTTATGAAAGCTTTACGTATGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939360       --> GATGAAAAGAGTGACGATGAATATGCAATTGTGAAAGCTTTACGTATGAG  Raphanus sativus cv Early Scarlet Globe
EY940328       --> GATGAAAAGAGTGACGATGAATATGCAATTGTGAAAGCTTTACGTATGAG  Raphanus sativus cv Early Scarlet Globe
FD970936       --> GATGAAAAGAGTGACGATGAATATGCAATTGTGAAAGCTTTACGTATGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987745       --> GATGAAAAGAGTGACGATGAATATGCATTTATGAAAGCTTTACGTATGAG  Raphanus raphanistrum subsp. landra
EV567390       --> .............................gATGAAAGCTTTACGTATGAG  Raphanus raphanistrum subsp. landra
EY923822       --> ..................................................  Raphanus raphanistrum subsp. landra

               151    -    201
UN07518        --> TGGTGGAGAAGGAGCAAACAGCTACTCTGCCAATTCTCTTCTTCAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572342       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY919564       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD547899       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547510       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983733       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV547733       --> TGGTGGAGAAGGAGCAAACAGCTACTCTGCCAATTCTCTTCTTCAGAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551655       --> TGGTGGAGAAGGAGCAAACAGCTACTCTGCCAATTCTCTTCTTCAGAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552066       --> TGGTGGAGAAGGAGCAAACAGCTACTCTGCCAATTCTCTTCTTCAGAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939360       --> TGGTGGAGAAGGAGCAAACAGTTACTCTGCCAATTCTCTTCTTCAGAGAA  Raphanus sativus cv Early Scarlet Globe
EY940328       --> TGGTGGAGAAGGAGCAAACAGTTACTCTGCCAATTCTCTTCTTTAGAGAA  Raphanus sativus cv Early Scarlet Globe
FD970936       --> TGGTGGAGAAGGAGCAAACAGTTACTCTGCCAATTCTCTTCTTCAGAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987745       --> TGGTGGAGAAGGAGCAAACAGCTACTCTGCCAATTCTCTTCTTCAGAGAA  Raphanus raphanistrum subsp. landra
EV567390       --> TGGTGGAGAAGGAGCAAAC-GCTACTCTGCCAATTCTCTTCTTCAGAGAA  Raphanus raphanistrum subsp. landra
EY923822       --> ..................................................  Raphanus raphanistrum subsp. landra

               201    -    251
UN07518        --> GAGTTTTATCAATGGCAAAACCAGTCTTGGTAAAAAACACAAAAGAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..................................................
EV572342       <-- ..................................................
EY919564       <-- ..................................................
FD547899       <-- ..................................................
FD547510       <-- ..................................................
FD983733       <-- ..................................................
EV547733       --> GAGTTTTATCAATGGCAAAACCAGTCTTGGTAAAAAACACAAAAGAAATG
FD551655       --> GAGTTTTATCAATGGCAAAACCAGTCTTGGTAAAAAACACAAAAGAAATG
FD552066       --> GAGTTTTATCAATGGCAAAACCAGTCTTGGTAAAAAACACAAAAGAAATG
EY939360       --> GAGTTTTATCAATGGCAAAACCAGTCTTGGTAAAAAACACAAAAGAAATG
EY940328       --> GAGTTTTATCAATGGCAAAACCAGTCTTGGTAAAAAACACAAAAGAAATG
FD970936       --> GAGTTTTATCAATGGCAAAACCAGTCTTGGTAAAAAACACAAAAGAAATG
FD987745       --> GAGTTTTATCAATGGCAAAACCAGTCTTGGTAAAAAACACAAAAGAAATG
EV567390       --> GAGTTTTATCAATGGCAAAACCAGTCTTGGTAAAAAACACAAAAGAAATG
EY923822       --> ..................................................

               251    -    301
UN07518        --> ATGGTGAATGTAAACTTCCCTAACTATATCAAAGTTGCTGAATTGGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..................................................
EV572342       <-- ..................................................
EY919564       <-- ..................................................
FD547899       <-- ..................................................
FD547510       <-- ..................................................
FD983733       <-- ..................................................
EV547733       --> ATGGTGAATGTAAACTTCCCTAACTATATCAAAGTTGCTGAATTGGGTTG
FD551655       --> ATGGTGAATGTAAACTTCCCTAACTATATCAAAGTTGCTGAATTGGGTTG
FD552066       --> ATGGTGAATGTAAACTTCCCTAACTATATCAAAGTTGCTGAATTGGGTTG
EY939360       --> ATGGTGAATGTAAACTTCCCTAACTATATCAAAGTTGCTGAATTGGGTTG
EY940328       --> ATGGTGAATGTAAACTTCCCTAACTATATCAAAGTTACTGAATTGGGTTG
FD970936       --> ATGGTGAATGTAAACTTCCCTAACTATATCAAAGTTGCTGAATTGGGTTG
FD987745       --> ATGGTGAATGTAAACTTCCCTAACTATATCAAAGTTGCTGAATTGGGATG
EV567390       --> ATGGTGAATGTAAACTTCCCTAACTATATCAAAGTTGCTGAATTGGGATG
EY923822       --> ..................................................

               301    -    351
UN07518        --> TTCCTCGGGGCAAAACACGTTTTTGGCTATCTCTGAGATCATCAACACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572342       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY919564       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD547899       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547510       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983733       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV547733       --> TTCCTCGGGGCAAAACACGTTTTTGGCTATCTCTGAGATCATCAACACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551655       --> TTCCTCGGGGCAAAACACGTTTTTGGCTATCTCTGAGATCATCAACACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552066       --> TTCCTCGGGGCAAAACACGTTTTTGGCTATCTCTGAGATCATCAACACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939360       --> TTCCTCGGGGCAAAACACGTTTTTGGCGATCTCTGAGATCATCAACACCA  Raphanus sativus cv Early Scarlet Globe
EY940328       --> TTCCTCGGGGCAAAACACGTTTTTGGCGATCTCTGAGATCATCAACACCA  Raphanus sativus cv Early Scarlet Globe
FD970936       --> TTCCTCGGGGCAAAACACGTTTTTGGCGATCTCTGAGATCATCAACACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987745       --> TTCCTCGGGGCAAAACACGTTTTTGGCTATCTCTGAGATCATCAACACCA  Raphanus raphanistrum subsp. landra
EV567390       --> TTCCTCGGGGCAAAACACGTTTTTGGCTATCTCTGAGATCATCAACACCA  Raphanus raphanistrum subsp. landra
EY923822       --> ..................................................  Raphanus raphanistrum subsp. landra

               351    -    401
UN07518        --> TCAATGTGTTGTGCCAAGACTCGAACCAAAACCCTCCGGAAATCGATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572342       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY919564       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD547899       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547510       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983733       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV547733       --> TCAATGTGTTGTGCCAAGACTCGAACCAAAACCCTCCGGAAATCGATTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551655       --> TCAATGTGTTGTGCCAAGACTCGAACCAAAACCCTCCGGAAATCGATTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552066       --> TCAATGTGTTGTGCCAAGACTCGAACCAAAACCCTCCGGAAATCGATTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939360       --> TCAATGTGTTGTGCCAAAACTCGGACCAAAACCCTCCAGAAATCGATTGT  Raphanus sativus cv Early Scarlet Globe
EY940328       --> TCAATGTGTTGTGCCAAAACTCGGACCAAAACCCTCCAGAAATCGATTGT  Raphanus sativus cv Early Scarlet Globe
FD970936       --> TCAATGTGTTGTGCCAAAACTCGGACCAAAACCCTCCAGAAATCGATTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987745       --> TCAATGTGTTGTGCCAAGACTCGAACCAAAACCCTCCGGAAATCGATTGT  Raphanus raphanistrum subsp. landra
EV567390       --> TCAATGTGTTGTGCCAAGACTCTAACCAAAACCCTCCGGAAATCGATTGT  Raphanus raphanistrum subsp. landra
EY923822       --> ..................................................  Raphanus raphanistrum subsp. landra

               401    -    451
UN07518        --> TGTCTGAATGATCTTCCCGAAAACGATTTCAACACAACGTTTAGGTTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572342       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY919564       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD547899       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547510       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983733       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV547733       --> TGTCTGAATGATCTTCCCGAAAACGATTTCAACACAACGTTTAGGTTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551655       --> TGTCTGAATGATCTTCCCGAAAACGATTTCAACACAACGTTTAGGTTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552066       --> TGTCTGAATGATCTTCCCGAAAACGATTTCAACACAACGTTTAGGTTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939360       --> TGTCTGAATGATCTTCCCGAAAACGATTTCAACACAACGTTTAGGTTGGT  Raphanus sativus cv Early Scarlet Globe
EY940328       --> TGTCTGAATGATCTTCCCGAAAACGATTTCAGCACAACGTTTAGGTTGGT  Raphanus sativus cv Early Scarlet Globe
FD970936       --> TGTCTGAATGATCTTCCCGAAAACGATTTCAACACAACATTTAGGTTGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987745       --> TGTCTGAATGATCTTCCCGAAAACGATTTCAACACAACGTTTAGGTTCGT  Raphanus raphanistrum subsp. landra
EV567390       --> TGTCTGAATGATCTTCCCGAAAACGATTTCAACACAACGTTTAGGTTCGT  Raphanus raphanistrum subsp. landra
EY923822       --> ..................................................  Raphanus raphanistrum subsp. landra

               451    -    501
UN07518        --> ACCATTCTTCAACAAGGAGATGATGATCAAAAACCAAGCATCATGTTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..................................................
EV572342       <-- ..................................................
EY919564       <-- ..................................................
FD547899       <-- ..................................................
FD547510       <-- ..................................................
FD983733       <-- ..................................................
EV547733       --> ACCATTCTTCAACAAGGAGATGATGATCAAAAACCAAGCATCATGTTTCG
FD551655       --> ACCATTCTTCAACAAGGAGATGATGATCAAAAACCAAGCATCATGTTTCG
FD552066       --> ACCATTCTTCAACAAGGAGATGATGATCAAAAACCAAGCATCATGTTTCG
EY939360       --> ACCATTCTTCAACAAGGAGATGATGATCAAAAACCAAGCATCATGTTTCG
EY940328       --> ACCATTCTTCAACAAGGAGATGATGATCAAAAACCAAGCATCATGTTTCG
FD970936       --> ATCATTCTTCAACAAGGAGATGATGATCAAAACCCAAGCATCATGTTTCG
FD987745       --> ACCATTCTTCAACAAGGAGATGATGATCAAAAACCAAGCATCATGTTTCG
EV567390       --> ACCATTCTTCAACAAGGAGATGATGATCAAAAACCAAGCATCATGTTTCG
EY923822       --> ..................................gAAGCATCATGTTTCG

               501    -    551
UN07518        --> TCTATGGAGCACCAGGTTCCTTCTACTCTAGGCTCTTCTCTCGCAACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..................................................
EV572342       <-- ..................................................
EY919564       <-- ..................................................
FD547899       <-- ..................................................
FD547510       <-- ..................................................
FD983733       <-- ..................................................
EV547733       --> TCTATAGAGCACCAGGTTCCTTCTACTCTAGGCTCTTCTCTCGCAACAGC
FD551655       --> TCTATGGAGCACCAGGTTCCTTCTACTCTAGGCTCTTCTCTCGCAACAGC
FD552066       --> TCTATGGAGCACCAGGTTCCTTCTACTCTAGGCTCTTCTCTCGCAACAGC
EY939360       --> TCTATGGAGCACCAGGTTCCTTCTACTCTAGGCTCTTCTCTCGCAACAGC
EY940328       --> TCTATGGAGCACCAGGTTCCTTCTACTCTAGGCTCTTCTCTCGCAACAGC
FD970936       --> TCTATGGAGCACCAGGTTCCTTCTACTCTAGGCTCTTCTCTCGCAACAGC
FD987745       --> TCTATGGAGCACCAGGTTCCTTCTACTCTAGGCTCTTCTCTCGCAACAGC
EV567390       --> TCTATGGAGCACCAGGTTCCTTCTACTCTAGGCTCTTCTCTCGCAACAGC
EY923822       --> TCTATGGAGCACCAGGTTCCTTCTACTCTAGGCTCTTCTCTCGCAACAGC

               551    -    601
UN07518        --> CTCCACCTTATACACTCCTCGTACGCTCTCCACTGGCTCTCTAAGGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ..........TACACTC-TCGTACGCTCTCCACTGGCTCTCTAAGGTTCC
EV572342       <-- ..................................................
EY919564       <-- ..................................................
FD547899       <-- ..................................................
FD547510       <-- ..................................................
FD983733       <-- ..................................................
EV547733       --> CTCCACCTTATACACTCCTCGTACGCTCTCCACTGGCTCTCTAAGGTTCC
FD551655       --> CTCCACCTTATACACTCCTCGTACGCTCTCCACTGGCTCTCTAAGGTTCC
FD552066       --> CTCCACCTTATACACTCCTCGTACGCTCTCCACTGGCTCTCTAAGGTTCC
EY939360       --> CTCCACCTTATACACTCCTCGTACGCTCTCCACTGGCTCTCTAAGGTTCC
EY940328       --> CTCCACCTTATACACTCCTCGTACGCTCTCCACTGGCTCTCTAAGGTTCC
FD970936       --> CTCCACCTTATACACTCCTCGTACGCTCTCCACTGGCTCTCTAAGGTTCC
FD987745       --> CTCCACCTTATACACTCCTCGTACGCTCTCCACTGGCTCTCTAAGGTTCC
EV567390       --> CTCCACCTTATACACTCCTCGTACGCTCTCCACTGGCTCTCTAAGGTTCC
EY923822       --> CTCCACCTTATACACTCCTCGTACGCTCTCCACTGGCTCTCTAAGGTTCC

               601    -    651
UN07518        --> AGAAAAACTCGAAAATGATAAGGAAAATGTGTTCATAACAAATTCAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- AGAAAAACTCGAAAATGATAAGGAAAATGTGTTCATAACAAATTCAAGTC
EV572342       <-- ..................................................
EY919564       <-- ..................................................
FD547899       <-- ..................................................
FD547510       <-- ..................................................
FD983733       <-- ..................................................
EV547733       --> AGAAAAACTCGAAAATGATAAGGAAAATGTGTTCATAACAAATTCAAGTC
FD551655       --> AGAAAAACTCGAAAATGATAAGGAAAATGTGTTCATAACAAATTCAAGTC
FD552066       --> AGAAAAACTCGAAAATGATAAAGAAAATGTGTTCATAACAAATTCAAGTC
EY939360       --> AGAAAAACTCGAAAATGACAAGGAAAATGTGTTCATAACAAATTCAAGTC
EY940328       --> AGAAAAACTCGAAAATGACAAGGAAAATGTGTTCATAACAAATTCAAGTC
FD970936       --> AGAAAAACTCGAAAATGACAAGGAAACTGTGTTCATAACAAATTCAAGTC
FD987745       --> AGAAAAACTCGAAAATGATAAGGAAAATGTGTTCATAACAAATTCAAGTC
EV567390       --> AGAAAAACTCGAAAATGATAAGGAAAATGTGTTCACAACAAATTCAAGTC
EY923822       --> AGAAAAACTCGAAAATGATAAGGAAAATGTGTTCATAACAAATTCAAGTC

               651    -    701
UN07518        --> CTCTAAGTGCATACAAAGCTTATTTGAATCAATTCCAAAGAGACTTCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- CTCTAAGTGCATACAAAGCTTATTTGAATCAATTCCAAAGAGACTTCACA
EV572342       <-- ..................................................
EY919564       <-- ..................................................
FD547899       <-- ..................................................
FD547510       <-- ..................................................
FD983733       <-- ..................................................
EV547733       --> CTCTAAGTGCATACAAAGCTTATTTGAATCAATTCCAAAGAGACTTCACA
FD551655       --> CTCTAAGTGCATACAAAGCTTATTTGAATCAATTCCAAAGAGACTTCACA
FD552066       --> CTCTAAGTGCATACAAAGCTTATTTGAATCAATTCCAAAGAGACTTCACA
EY939360       --> CTCTAAGTGCATACAAAGCTTACTTGAATCAGTTCCAACGAGACTTCACA
EY940328       --> CTCTAAGTGCATACAAAGCTTACTTGAATCAGTTCCAACGAGACTT....
FD970936       --> CTCTAAGTGCATACAAAGCTTACTTGAAT.....................
FD987745       --> CTCTAAGTGCATACAAAGCTTATTTGAATCAATTCCAAAGAGACTTCACA
EV567390       --> CTCTAAGTGCATACAAAGCTTATTTGAATCAATTCCAAAGAGACTTCACA
EY923822       --> CTCTAAGTGCATACAAAGCTTATTTGAATCAATTCCAAAGAGACTTCACA

               701    -    751
UN07518        --> ATGTTTCTTAGGATACGTTCTGAAGAAATTGTCTCTAACGGACGAATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ATGTTTCTTAGGATACGTTCTGAAGAAATTGTCTCTAACGGACGAATGGT
EV572342       <-- ..................................................
EY919564       <-- ..................................................
FD547899       <-- ..................................................
FD547510       <-- ..................................................
FD983733       <-- ..................................................
EV547733       --> ATGTTTCTTAGGATACGTTCTGAAGAAATTGTCTCTAACGGACGAATGGT
FD551655       --> -TGTTTCTTAG-ATACGTTCTGAAGAAATTGTCT................
FD552066       --> ATGTTTCTTATGATA...................................
EY939360       --> ATGTTTCT-AAGATACGTTCTGAAGAA-TTGTCTCTAACGGACGAATGGT
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ATGTTTCTTAG-ATACGTTCTGAAGAA-TTGTCTCTAACGGACTAATGGT
EV567390       --> ATGTTTCTTAGGATACGTTCTGAAGAAATTGTCTCTAACGGACGAATGGT
EY923822       --> ATGTTTCTTAGGATACGTTCTGAAGAAATTGTCTCTAACGGACGAATGGT

               751    -    801
UN07518        --> TTTT-AGCTTCATCGGTAGAAACACCCTTAACAATGATCCATTGTATAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- TTTT-AGCTTCATCGGTAGAAACACCCTTAACAATGATCCATTGTATAGA
EV572342       <-- .....AGCTTCATCGGTAGAAACACCCTTAACAATGATCCATTGTATAGA
EY919564       <-- ..............................ACAATGATCCATTGTATAGA
FD547899       <-- ..................................................
FD547510       <-- ..................................................
FD983733       <-- ..................................................
EV547733       --> TTTT-AGCTTCATCGGTAGAAACACCCTTAACAATGATCCATTGTATAGA
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> TTT--AGCTTCATCGGTAGAA-CACCCTTA-C-ATGAT-CATTGTATAGA
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> TTTT-AGCT.........................................
EV567390       --> TTTTTAGCTTCATCGGTAGAAACACCCTTAACAATGATCCATTGTATAGA
EY923822       --> TTTT-AGCTTCATCGGTAGAAACACCCTTAACAATGATCCATTGTATAGA

               801    -    851
UN07518        --> GATTGTTGTCACTTTTGGACACTGCTATCAAAATCACTCCGTGACCTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- GATTGTTGTCACTTTTGGACACTGCTATCAAAATCACTCCGTGACCTAGT
EV572342       <-- GATTGTTGTCACTTTTGGACACTGCTATCAAAATCACTCCGTGACCTAGT
EY919564       <-- GATTGTTGTCACTTTTGGACACTGCTATCAAAATCACTCCGTGACCTAGT
FD547899       <-- ..................................................
FD547510       <-- ..................................................
FD983733       <-- ..................................................
EV547733       --> GATTGTTGTCACTTTTGGACACTGCTATCAAAATCACTCCGTGAC-TAGT
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> GATTGTTGTCACTTTgga................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> GATTGTTGTCACTTTTGGACACTGCTATCAAAATCACTCCGTGACCTAGT
EY923822       --> GATTGTTGTCACTTTTGGACACTGCTATCAAAATCACTCCGTGACCTAGT

               851    -    901
UN07518        --> CTTCGAGGGCCTAGTGAGTAAACAAAAACTGGAAGCATTCAACATGCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- CTTCGAGGGCCTAGTGAGTAAACAAAAACTGGAAGCATTCAACATGCCAT
EV572342       <-- CTTCGAGGGCCTAGTGAGTAAACAAAAACTGGAAGCATTCAACATGCCAT
EY919564       <-- CTTCGAGGGCCTAGTGAGTAAACAAAAACTGGAAGCATTCAACATGCCAT
FD547899       <-- .TTCGAGGGCCTAGTGAGTAAACAAAAACTGGAAGCATTCAACATGCCAT
FD547510       <-- .....AGGGCCTAGTGAGTAAACAAAAACTGGAAGCATTCAACATGCCAT
FD983733       <-- ..................................................
EV547733       --> CTTCG.............................................
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> ..................................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> CTTCGAGGGCCTAGTGAGTAAACAAAAACTGGAAGCATTCAACATGCCAT
EY923822       --> CTTCGAGGGCCTAGTGAGTAAACAAAAACTGGAAGCATTCAACATGCCAT

               901    -    951
UN07518        --> TTTATGATCCAAACGAACAAGAACTCAAAGAAGTGATAGAAAACGAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- TTTATGATCCAAACGAACAAGAACTCAAAGAAGTGATAGAAAACGAAGGT
EV572342       <-- TTTATGATCCAAACGAACAAGAACTCAAAGAAGTGATAGAAAACGAAGGT
EY919564       <-- TTTATGATCCAAACGAACAAGAACTCAAAGAAGTGATAGAAAACGAAGGT
FD547899       <-- TTTATGATCCAAACGAACAAGAACTCAAAGAAGTGATAGAAAACGAAGGT
FD547510       <-- TTTATGATCCAAACGAACAAGAACTCAAAGAAGTGATAGAAAACGAAGGT
FD983733       <-- ..................................................
EV547733       --> ..................................................
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> ..................................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> TTTATGATCCAAACGAACAAGA-CTCAAAGAAGTGATAGA..........
EY923822       --> TTTATGATCCAAACGAACAAGAACTCAAAGAAGTGATAGAAAACGAAGGT

               951    -   1001
UN07518        --> TCTTTTGAAATCAATGACTTAGAGACGTATGGATTCGATCTTGGCCATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- TCTTTTGAAATCAATGACTTAGAGACGTATGGATTCGATCTTGGCCATAG
EV572342       <-- TCTTTTGAAATCAATGACTTAGAGACGTATGGATTCGATCTTGGCCATAG
EY919564       <-- TCTTTTGAAATCAATGACTTAGAGACGTATGGATTCGATCTTGGCCATAG
FD547899       <-- TCTTTTGAAATCAATGACTTAGAGACGTATGGATTCGATTTTGGCCATAG
FD547510       <-- TCTTTTGAAATCAATGACTTAGAGACGTATGGATTCGATCTTGGCCATAT
FD983733       <-- ..................................................
EV547733       --> ..................................................
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> ..................................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> ..................................................
EY923822       --> TCTTTTGAAATCAATGACTTAGAGACGTATGGATTCGATCTTGGCCATAG

               1001   -   1051
UN07518        --> TAACTGCGACAGCAACGAAGAAGATGAATATGAAGCAGGATACAATGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- TAACTGCGACAGCAACGAAGAAGATGAATATGAAGCAGGATACAATGAAG
EV572342       <-- TAACTGCGACAGCAACGAAGAAGATGAATATGAAGCAGGATACAATGAAG
EY919564       <-- TAACTGCGACAGCAGCGAAGAAGATGAATATGAAGCAGGATACAATGAAG
FD547899       <-- TAACTGCGACAGCAACGAAGAAGATGAATATGAAGCAGGATACAATGAAG
FD547510       <-- TAACTGCGACAGCAACGAAGAAGATGAATATGAAGCAGGATACAATGAAG
FD983733       <-- ..................................................
EV547733       --> ..................................................
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> ..................................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> ..................................................
EY923822       --> TAACTGCGACAGCAGCGAAGAAGATGAATATGAAGCAGGATACAATGAAG

               1051   -   1101
UN07518        --> CCTATTGTATTAGAGCCGTTGCTGAACCAATGCTCATTGCTCATTTTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- CCTATTGTATTAGAGCCGTTGCTGAACCAATGCTCATTGCTCATTTTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572342       <-- CCTATTGTATAAGAGCCGTTGCTGAACCAATGCTCATTGCTCATTTTGGA  Raphanus raphanistrum subsp. landra
EY919564       <-- CCTATTGTATAAGAGCCGTTGCTGAACCAATGCTCATTGCTCATTTTGGA  Raphanus raphanistrum subsp. landra
FD547899       <-- CCTATTGTATTAGAGCCGTTGCTGAACCAATGCTCATTGCTCATTTTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547510       <-- CCTATTGTATTAGAGCCGTTGCTGAACCAATGCTCATTGCTCATTTTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983733       <-- .......................GAACCAATGCTCATTGCTCATTTTGGA  Raphanus raphanistrum subsp. landra
EV547733       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551655       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552066       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939360       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY940328       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD970936       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987745       --> ..................................................  Raphanus raphanistrum subsp. landra
EV567390       --> ..................................................  Raphanus raphanistrum subsp. landra
EY923822       --> CCTATTGTATAAGAGCCGTTGCTGAACCAATGCTCATTGCTCATTTTGGA  Raphanus raphanistrum subsp. landra

               1101   -   1151
UN07518        --> GAAGATGTTATCGATATCTTGTTTGATAAGTATGCTCGCCACGTGACACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- GAAGATGTTATCGATATCTTGTTTGATAAGTATGCTCGCCACGTGACACA
EV572342       <-- GAAGATGTTATCGATATCTTGTTTGATAAGTATGCTCGCCACGTGACACA
EY919564       <-- GAAGATGTTATCGATATCTTGTTTGATAAGTATGCTCGCCACGTGACACA
FD547899       <-- GAAGATGTTATCGATATCTTGTTTGATAAGTATGCTCGCCACGTGACACA
FD547510       <-- GAAGATGTTATCGATATCTTGTTTGATAAGTATGCTCGCCACGTGACACA
FD983733       <-- GAAGATGTTATCGATATCTTGTTTGATAAGTATGCTCGCCACGTGACACA
EV547733       --> ..................................................
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> ..................................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> ..................................................
EY923822       --> GAAGATGTTATCGATATCTTGTTTGATAAGTATGCTCGCCACGTGACACA

               1151   -   1201
UN07518        --> ACACTCAAGCTGCAGAAACAAAACGAGTGTCACTCTTGTCCTTTCGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ACACTCAAGCTGCAGAAACAAAACGAGTGTCACTCTTGTCCTTTCGTTGA
EV572342       <-- ACACTCAAGCTGCAGAAACAAAACGAGTGTCACTCTTGTCCTTTCGTTGA
EY919564       <-- ACACTCAAGCTGCAGAAACAAAACAAGTGTCACTCTTGTCCTTTCGTTGA
FD547899       <-- ACACTCAAGCTGCAGAAACAAAACGAGTGTCACTCTTGTCCTTTCGTTGA
FD547510       <-- ACACTCAAGCTGCA-AAACAAAACGAGTGTCACTCTTGTCCTTTCGTTGA
FD983733       <-- ACACTCAAGCTGCAGAAACAAAACGAGTGTCACTCTTGTCCTTTCGTTGA
EV547733       --> ..................................................
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> ..................................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> ..................................................
EY923822       --> ACACTCAAGCTGCAGAAACAAAACAAGTGTCACTCTTGTCCTTTCGTTGA

               1201   -   1251
UN07518        --> CTAAGAAATAATCAGCATTTGCTTGAAAAAAATGCTTCTATATTTACTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- CTAAGAAATAATCAGCATTTGCTTGAAAAAAATGCTTCTATATTTACTTA
EV572342       <-- CTAAGAAATAATCAGCATTTGCTTGAAAAAAATGCTTCTATATTTACTTA
EY919564       <-- CTAAGAAATAATCAGCATTTGCTTGAAAAAAATGCTTCTATATTTACTTA
FD547899       <-- CTAAGAAATAATCAGCATTTGCTTGAAAAAAATGCTTCTATATTTACTTA
FD547510       <-- CTAAGAAATAATCAGCATTTGCTTGAAAAAAATGCTTCTATATTTACTTA
FD983733       <-- CTAAGAAATAATCAGCATTTGCTTGAAAAAAATGCTTCTATATTTACTTA
EV547733       --> ..................................................
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> ..................................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> ..................................................
EY923822       --> CTAAGAAATAATCAGCATTTGCTT..........................

               1251   -   1301
UN07518        --> TTATTTCCCGATTCCGTTAATAAATTTTAAGACATGCCCTTCATGTGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- TTATTTCCCGATTCCGTTAATAAATTTTAAGACATGCCCTTCATGTGATG
EV572342       <-- TTATTTCCCGATTCCGTTAATAAATTCTAAGACATGCCCTTCATGTGATG
EY919564       <-- TTATTTCCCGATTCCGTTAATAAATTCTAAGACATGCCCTTCATGTGATG
FD547899       <-- TTATTTCCCGATTCCGTTAATAAATTTTAAGACATGCCCTTCATGTGATG
FD547510       <-- TTATTTCCCGATTCCGTTAATAAATTTTAAGACATGCCCTTCATGTGATG
FD983733       <-- TTATTTCCCGATTCCGTTAATAAATTTTAAGACATGCCCTTCATGTGATG
EV547733       --> ..................................................
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> ..................................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> ..................................................
EY923822       --> ..................................................

               1301   -   1351
UN07518        --> ATGTGATGCGTGTCCTGGAAAACAGATTGTGATTGTAATATGTTATATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ATGTGATGCGTGTCCTGGAAAACAGATTGTGATTGTAATATGTTATATGT
EV572342       <-- ATGTGATGCGTGTCCTGGAAAACAGATTGTGATTGTAATATGTTATATGT
EY919564       <-- ATGTGATGCGTGTCCTGGAAAACAGATTGTGATTGTAATATGTTATATGT
FD547899       <-- ATGTGATGCGTGTCCTGGAAAACAGATTGTGATTGTAATATGTTATATGT
FD547510       <-- ATGTGATGCGTGTCCTGGAGAACAGATTGTGATTGTAATATGTTATATGT
FD983733       <-- ATGTGATGCGTGTCCTGGAAAACAGATTGTGATTGTAATATGTTATATGT
EV547733       --> ..................................................
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> ..................................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> ..................................................
EY923822       --> ..................................................

               1351   -   1401
UN07518        --> TCTATGTGTGATTGTAATATGTTATACTTATATGTTCTATGTGTGATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- TCTATGTGTGATTGTAATATGTTATACTTATATGTTCTATGTGTGATTGT
EV572342       <-- TCTATGTGTGATTGTAATATGTTATACTTATATGTTCTATGTGTGATTGT
EY919564       <-- TCTATGTGTGATTGTAATATGTTATACTTATATGTTCTATGTGTGATTGT
FD547899       <-- TCTATGTGTGATTGTAATATGTTATACTTATATGTTCTATGTGTGATTGT
FD547510       <-- TCTATGTGTGATTGTAATATGTTATACTTATATGTTCTATGTGTGATTGT
FD983733       <-- TCTATGTGTGATTGTAATATGTTATACTTATATGTTCTATGTGTGATTGT
EV547733       --> ..................................................
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> ..................................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> ..................................................
EY923822       --> ..................................................

               1401   -   1451
UN07518        --> AATATGTTATACGTATATGTTCTATGTGTGATTGTAAGAACTCTTGCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- AATATGTTATACGTATATGTTCTATGTGTGATTGTAAGAACTCTTGCTCA
EV572342       <-- AATATGTTATACGTATATGTTCTATGTGTGATTGTAAGAACTCTTGCTCA
EY919564       <-- AATATGTTATACGTATATGTTCTATGTGTGATTGTAAGAACTCTTGCTCA
FD547899       <-- AATATGTTATACGTATATGTTCTATGTGTGATTGTAAGAACTCTTGCTCA
FD547510       <-- AATATGTTATACGTATATGTTCc...........................
FD983733       <-- AATATGTTATACGTATATGTTCTATGTGTGATTGTAAGAACTCTTGCTCA
EV547733       --> ..................................................
FD551655       --> ..................................................
FD552066       --> ..................................................
EY939360       --> ..................................................
EY940328       --> ..................................................
FD970936       --> ..................................................
FD987745       --> ..................................................
EV567390       --> ..................................................
EY923822       --> ..................................................

               1451   -   1501
UN07518        --> ATATTTGTAATAATCATCAATGATAAATTGCATTGACAATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543552       <-- ATATTTGTAATAATCATCAATGATAAATTGCATTGAC......
EV572342       <-- ATATTTGTAATAATCATCAATGATAAATTGCATTGACAAT...
EY919564       <-- ATATTTGTAATAATCATCAATGATAAATTGCATTGACAATGAG
FD547899       <-- ATATTTGTAATAATCATCAATGATAAATTGCATTGACAATG..
FD547510       <-- ...........................................
FD983733       <-- ATATTTGTAATAATCATCAATGATAAATTGCATTGACAATG..
EV547733       --> ...........................................
FD551655       --> ...........................................
FD552066       --> ...........................................
EY939360       --> ...........................................
EY940328       --> ...........................................
FD970936       --> ...........................................
FD987745       --> ...........................................
EV567390       --> ...........................................
EY923822       --> ...........................................