Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN07831

               1      -     51
UN07831        --> GAAACCACAAGCAAAAGAAACTTATTTAGTGATTAGGTTTTGTGATGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- ..................................................
FD939313       <-- ..................................................
FD987855       <-- ..................................................
FD560188       <-- ..................................................
FD555785       --> GAAACCACAAGCAAAAGAAACTTATTTAGTGATTAGGTTTTGTGATGTGC
FD983819       --> GAAACCACAAGCAAAAGAAACTTATTTAGTGATTAGGTTTTGTGATGTGC
FD935467       --> ..................................................

               51     -    101
UN07831        --> TTGCACATTATAGACACACAAAAGGATTTATAATTTTATATTATACAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- ..................................................
FD939313       <-- ..................................................
FD987855       <-- ..................................................
FD560188       <-- ..................................................
FD555785       --> TTGCACATTATAGACACACAAAAGGATTTATAATTTTATATTATACAATA
FD983819       --> TTGCACATTATAGACACACAAAAGGATTTATAATTTTATATTATACAATA
FD935467       --> ..........ctGACACACAAAAGGATTTATAATTTTATATTATACAATA

               101    -    151
UN07831        --> TATACAGATTTGCAGGTAGTTACGCTAAAAACCTATAGTAAATTAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- ....CAGATT-GCAGGTAGT-ACGCTAAA--ACTATAGTAAATTAAGGAG
FD939313       <-- .............................................AGGAG
FD987855       <-- ..................................................
FD560188       <-- ..................................................
FD555785       --> TATACAGATTTGCAGGTAGTTACGCTAAAAACCTATAGTAAATTAAGGAG
FD983819       --> TATACAGATTTGCAGGTAGTTACGCTAAAAACCTATAGTAAATTAAGGAG
FD935467       --> TATACAGATTTGCAGGTAGTTACGCTAAAAACCTATAGTAAATTAAGGAG

               151    -    201
UN07831        --> GCCAGATATGGTGGTTGTGTGTTAAGAAGTAGAATCTTCAGACATGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- GCCAGATATGGTGGTTGTGTGTTAAGAAGTAGAATCTTCAGACATGTGAT
FD939313       <-- GCCAGATATGGTGGTTGTGTGTTAAGAAGTAGAATCT-CAGACATGTGAT
FD987855       <-- .CCAGATATGGTGGTTGTGTGTTAAGAAGTAGAATCTTCAGACATGTGAT
FD560188       <-- ....GATATGGTGGTTGTGTGTTAAGAAGTAGAATCTTCAGACATGTGAT
FD555785       --> GCCAGATATGGTGGTTGTGTGTTAAGAAGTAGAATCTTCAGACATGTGAT
FD983819       --> GCCAGATATGGTGGTTGTGTGTTAAGAAGTAGAATCTTCAGACATGTGAT
FD935467       --> GCCAGATATGGTGGTTGTGTGTTAAGAAGTAAAATCTTCAAACATGTGAT

               201    -    251
UN07831        --> GTTGACGGCGCATTCTAGCAGCCCAAGACATTGCGTTGTTTTCTTTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- GTTGACGGCGCATTCTAGCAGCCCAAGACATTGCGTTGTTTTCTTTTTGA
FD939313       <-- GTTGACGGCGCATTCTAGCAGCCCAAGACATTGCGTTGTTTTCTTTTTGA
FD987855       <-- GT-GACGGCGCATTCTAGCAGCCCAAGACATTGCGTTGTTTTCTTTTTGA
FD560188       <-- GTTGACGGCGCATTCTAGCAGCCCAAGACATTGCGTTGTTTTCTTTTTGA
FD555785       --> GTTGACGGCGCATTCTAGCAGCCCAAGACATTGCGTTGTTTTCTTTTTGA
FD983819       --> GTTGACGGCGCATTCTAGCAGCCCAAGACATTGCGTTGTTTTCTTTTTGA
FD935467       --> GTTGACGGCGCATTCTAGCAGCCCAAGACATTGCGTTGTTTTCTTTTTGA

               251    -    301
UN07831        --> TTGCTTCTTTTCTTGAGCCCTGAGAGCTGAGTTTGCCATTTTTTCTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- TTGCTTCTTTTCTTGAGCCCTGAGAGCTGAGTTTGCCATTTTTTCTTCCA
FD939313       <-- TTGCTTCTTTTCTTGAGCCCTGAGAGCTGAGTTTGCCATTTTTTCTTCCA
FD987855       <-- TTGCTTCTTTTCTTGAGCCCTGAGAGCTGAGTTTGCCATTTTTTCTTCCA
FD560188       <-- TTGCTTCTTTTCTTGAGCC-TGAGAGCTGAGTTTGCCATTTTTTCTTCCA
FD555785       --> TTGCTTCTTTTCTTGAGCCCTGAGAGCTGAGTTTGCCATTTTTTCTTCCA
FD983819       --> TTGCTTCTTTTCTTGAGCCCTGAGAGCTGAGTTTGCCATTTTTTCTTCCA
FD935467       --> TTGCTTCTTTTCTTGAGCCCTGAGAGCTGAGTTTGCCATTTTTTCTTCCA

               301    -    351
UN07831        --> CTCACCCTTCTCTTCCACAATTTCCTCATCGTCGTATCGATTCCGGCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- CTCACTCTTCTCTTCCACAATTTCCTCATCGTCGTATCGATTCCGGCGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD939313       <-- CTCACTCTTCTCTTCCACAATTTCCTCATC---GTATCGATTCCGGCGTC  Raphanus sativus var. oleiformis
FD987855       <-- CTCACCCTTCTCTTCCACAATTTCCTCATCGTCGTATCGATTCCGGCGTC  Raphanus raphanistrum subsp. landra
FD560188       <-- CTCACCCTTCTCTTCCACAATTTCCTCATCGTCGTATCGATTCCGGCGTC  Raphanus raphanistrum subsp. landra
FD555785       --> CTCACCCTTCTCTTCCACAATTTCCTCATCGTCGTATCGATTCCGGCGTC  Raphanus raphanistrum subsp. landra
FD983819       --> CTCACCCTTCTCTTCCACAATTTCCTCATCGTCGTATCGATTCCGGCGTC  Raphanus raphanistrum subsp. landra
FD935467       --> CTCACTCTTCTCTTCCACAATTTCCTCATCGT---ATCGATTCCGGCGTC  Raphanus sativus var. oleiformis

               351    -    401
UN07831        --> GTCCTGAGAACGAAAATGAGAATCCCATAGACAAATCTCTGTCGTAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- GTCCTGAGAACGAAAATGAGAATCCCATAGACAAATCTCTGTCGTAGAGA
FD939313       <-- GTCCTGAGAACGAAAATGAGAATCCCATAGACAAATCTCTGTCGTAGAGA
FD987855       <-- GTCCTGAGAACGAAAATGAGAATCCCATAGACAAATCTCTGTCGTAGAGA
FD560188       <-- GTCCTGAGAACGAAAATGAGAATCCCATAGACAAATCTCTGTCGTAGAGA
FD555785       --> GTCCTGAGAACGAAAATGAGAATCCCATAGACAAATCTCTGTCGTAGAGA
FD983819       --> GTCCTGAGAACGAAAATGAGAATCCCATAGACAAATCTCTGTCGTAAAGA
FD935467       --> GTCCTGAGAACGAAAATGAAAATCCCATAAACAAATCTCTGTCGTAAAGA

               401    -    451
UN07831        --> ACTCTCCGGGTAGGATCCGAAAGAGTCTCGTAAGCTTCTTGAACCCTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- ACTCTCCGGGTAGGATCCGAAAGAGTCTCGTAAGCTTCTTGAACCCTAAT
FD939313       <-- ACTCTCCGGCTAGGATCCGAGAGAGTCTCGTAAGCTTCTTGAACCCTGAT
FD987855       <-- ACTCTCCGGGTAGGATCCGAAAGAGTCTCGTAAGCTTCTTGAACCCTAAT
FD560188       <-- ACTCTCCGGGTAGGATCCGAAAGAGTCTCGTAAGCTTCTTGAACCCTAAT
FD555785       --> ACTCTCCGGGTAGGATCCGAAAGAGTCTCGTAAGCTTCTTGAACCCTAAT
FD983819       --> ACTCTCCGGGTAGGATCCGAAAGAGTCTCGTAAGCTTCTTGAACCCTAAT
FD935467       --> ACTCTCCGGCTAGGATCCGAGAGAGTCTCGTAAGCTTCTTGAACCCTGAT

               451    -    501
UN07831        --> AAACCGATCTGTGTATTCCTCGACCCGATCCGGCGGCGAAACATCGGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- AAACCGATCTGTGTATTCCTCGACCCGATCCGGCGGCGAAACATCGGGAT
FD939313       <-- AAACCGATCTGTGTATTCCTCGACCCGATCCGGCGGCGAAACATCGGGAT
FD987855       <-- AAACCGATCTGTGTATTCCTCGACCCGATCCGGCGGCGAAACATCGGGAT
FD560188       <-- AAACCGATCTGTGTATTCCTCGACCCGATCCGGCGGCGAAACATCGGGAT
FD555785       --> AAACCGATCTGTGTATTCCTCGACCCGATCCGGCGGCGAAACATCGGGAT
FD983819       --> AAACCGATCTGTGTATTCCTCGACCCGATCCGGCGGCGAAACATCGGGAT
FD935467       --> AAACCGATCTGTGTATTCCTCGACCCGATCCGGCGGCGAAACATCGGGAT

               501    -    551
UN07831        --> GATACTTTCGAGCAAGCTGTTTATACGCCTGTTTGATTTCCGGGAGACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- GATACTTTCGAGCAAGCTGTTTATACGCCTGTTTGATTTCCGGGGGACTA
FD939313       <-- GATACTTTCGAGCAAGCTGTTTATACGCCTGTTTGATTTCCGGGAGGCTA
FD987855       <-- GATACTTTCGAGCAAGCTGTTTATACGCCTGTTTGATTTCCGGGAGACTA
FD560188       <-- GATACTTTCGAGCAAGCTGTTTATACGCCTGTTTGATTTCCGGGAGACTA
FD555785       --> GATACTTTCGAGCAAGCTGTTTATACGCCTGTTTGATTTCCGGGAGACTA
FD983819       --> GATACTTTCGAGCAAGCTGTTTATACGCCTGTTTGATTTCCGGGAGACTA
FD935467       --> GATACTTTCGAGCAAGCTGTTTATACGCCTGTTTGATTTCCGGGAGGCTA

               551    -    601
UN07831        --> ACGGATTCGGTGACGCCGAGGAGATCGTAGAAGCTCAAATCCTCCGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- ACGGATTCGGTGACGCCGAGGAGATCGTAGAAGCTCAAATCCTCCGATTG
FD939313       <-- ACGGATTCGGTGACGCCGAGGAGATCGTAGAAGCTCAAATCCTCCGATTG
FD987855       <-- ACGGATTCGGTGACGCCGAGGAGATCGTAGAAGCTCAAATCCTCCGATTG
FD560188       <-- ACGGATTCGGTGACGCCGAGGAGATCGTAGAAGCTCAAATCCTCCGATTG
FD555785       --> ACGGATTCGGTGACGCCGAGGAGATCGTAGAAGCTCAAATCCTCCGATTG
FD983819       --> ACGGATTCGGTGACGCCGAGGAGATCGTAGAAGCTCAAATCCTCCGATTG
FD935467       --> ACGGATTCGGTGACGCCGAGGAGATCGTAAAAGCTCAAATCCTCCGATTG

               601    -    651
UN07831        --> TTTTACCGGGTCGTCGTGAATGAGCCGGGCTTGGATCCGGGTTGATACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- TTTTACCGGGTCGTCGTGAATGAGCCGGGCTTGGATCCGGGTTGATACGA
FD939313       <-- TTTTACCGGGTCGTCGTGAATGAGCCGGGCTTGGATCCGGGTTGATACGA
FD987855       <-- TTTTACCGGGTCGTCGTGAATGAGCCGGGCTTGGATCCGGGTTGATACGA
FD560188       <-- TTTTACCGGGTCGTCGTGAATGAGCCGGGCTTGGATCCGGGTTGATACGA
FD555785       --> TTTTACCGGGTCGTCGTGAATGAGCCGGGCTTGGATCCGGGTTGATACGA
FD983819       --> TTTTACCGGGTCGTCGTGAATGAGCCGGGCTTGGATCCGGGTTGATACGA
FD935467       --> TTTTACCGGGTCGTCGTGAATGAGCCGGGCTTGGATCCGGGTTGATACGA

               651    -    701
UN07831        --> ACCGGTTTCGGGTTGGGTATGAGAGGGTAGTAGAAGGGAAAGAAGCGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- ACCGGTTTCGGGTTGGGTATGAGAGGGTAGTAGAAGGGAAAGAAGCGGGT
FD939313       <-- ACCGGTTTCGGGTTGGGTATGAGAGGGTAGAAGAAGGGAAAGAAGCGGGT
FD987855       <-- ACCGGTTTCGGGTTGGGTATGAGAGGGTAGTAGAAGGGAAAGAAGCGGGT
FD560188       <-- ACCGGTTTCGGGTTGGGTATGAGAGGGTAGTAGAAGGGAAAGAAGCGGGT
FD555785       --> ACCGGTTTCGGGTTGGGTATGAGAGGGTAGTAGAAGGGAAAGAAGCGGGT
FD983819       --> ACCGGTTTCGGGTTGGGTATGAGAGGGTAGTAGAAGGGAAAGAAGCGGGT
FD935467       --> ACCGGTTTCGGGTTGGGTATGAGAGGGTAGAAGAAGGGAAAGAAGCGGGT

               701    -    751
UN07831        --> AGAGAGGAGACTGGTCGTTTATAGAGGAATGGGTAATGACTGGTGGCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- AGAGAGGAGACTGGTCGTTTATAGAGGAATGGGTAATGACTGGTGGCGAG
FD939313       <-- AGAGAGGAGACTGGTCGTTTATAGAGGAATGGGTAATGACTGGTGGCGAG
FD987855       <-- AGAGAGGAGACTGGTCGTTTATAGAGGAATGGGTAATGACTGGTGGCGAG
FD560188       <-- AGAGAGGAGACTGGTCGTTTATAGAGGAATGGGTAATGACTGGTGGCGAG
FD555785       --> AGAGAGGAGACTGGTCGTTTATAGAGGAATGGGTAATGACTGGTGGCGAG
FD983819       --> AGAGAGGAGACTGGTCGTTTATAGAGGAATGGGTAATGACTGGTGGCGAG
FD935467       --> A.................................................

               751    -    801
UN07831        --> AATGGATGATCCTTTGTAGCATCTCATTGTTTCGATTTGAGGTTTATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- AATGGATGATCCTTTGTAGCATCTCATTGTTTCGATTTGAGGTTTATGTT
FD939313       <-- AATGGATGATCCTTTGTAGCATCTCATTGTTTTGATTTGAGGTTTATGTT
FD987855       <-- AATGGATGATCCTTTGTAGCATCTCATTGTTTCGATTTGAGGTTTATGTT
FD560188       <-- AATGGATGATCCTTTGTAGCATCTCATTGTTTCGATTTGAGGTTTATGTT
FD555785       --> AATGGATGATCCTTTGTAGCATCTCATTGTT-CGATTTGAG-TTTATGTT
FD983819       --> AATGGATGATCCTTTGTAGCATCTCATTGTTTCGATTTGAG-TTTATGTT
FD935467       --> ..................................................

               801    -    851
UN07831        --> TATGTTTTTCGGGTTTG---TTG---ACTTTTGGTGATGTTCGGTTGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- TATGTTTTTCGGGTTTG---TTG---ACTTTTGGTGATccc.........
FD939313       <-- TTTGTTTTTTGGGTTTGGGTTTGCTGACTTTTGGTGATGTTCGGTTGTGG
FD987855       <-- TATGTTTTTCGGGTTTG---TTG---ACTTTTGGTGATGTTCGGTTGTGG
FD560188       <-- TATGTTTTTCGGGTTTG---TTG---ACTTTTGGTGATGTTCGGTTGTGG
FD555785       --> ..................................................
FD983819       --> TAT...............................................
FD935467       --> ..................................................

               851    -    901
UN07831        --> AGTCCAATGTCGAAATAGTTGGAAGTGACGACCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX902619       <-- ...................................
FD939313       <-- AGTCCAATGTCGAAATAGTTGGAAGTGACGACCCC
FD987855       <-- AGTCCAATGTCGAAATAGTTcc.............
FD560188       <-- AGTCCAATGTCGAAATAGTTcc.............
FD555785       --> ...................................
FD983819       --> ...................................
FD935467       --> ...................................