Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN08230

               1      -     51
UN08230        --> GGTGGGGAAGGGCTGCCCGAACATGAAGAAGGCGTTGATCAGTAAATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ..................................................
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> GGTGGGGAAGGGCTGCCCGAACATGAAGAAGGCGTTGATCAGTAAATCCC
FY450831       --> .....GGAAGGGCTGCCCGAACATGAAGAAGGCGTTGATCAGTAAATCCC
FY431177       --> ........................................AGTAAATCCC
EX904159       --> ..................................................
FY428541       --> ..................................................
EV535826       --> ..................................................
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ..................................................

               51     -    101
UN08230        --> CTTTGTTGTCTGACAATGGTTTGGTCTCTTTTGCGAAAGGTGCTTTGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ..................................................
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> CTTTGTTGTCTGACAATGGTTTGGTCTCTTTTGCGAAAGGTGCTTTGTCG
FY450831       --> CTTTGTTGTCTGACAATGGTTTGGTCTCTTTTGCGAAAGGTGCTTTGTCG
FY431177       --> CTTTGTTGTCTGACAATGGTTTGGTCTCTTTTGCGAAAGGTGCTTTGTCG
EX904159       --> ............gCAATGGTTTGGTCTCTTTTGCGAAAGGTGCTTTGTCG
FY428541       --> ..................................................
EV535826       --> ..................................................
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ..................................................

               101    -    151
UN08230        --> TTGGAGAGTGTTCAGCTTGAAGAGTGCCACAGGGTCACCCAGTTTGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ..................................................
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> TTGGAGAGTGTTCAGCTTGAAGAGTGCCACAGGGTCACCCAGTTTGGGTT
FY450831       --> TTGGAGAGTGTTCAGCTTGAAGAGTGCCACAGGGTCACCCAGTTTGGGTT
FY431177       --> TTGGAGAGTGTTCAGCTTGAAGAGTGCCACAGGGTCACCCAGTTTGGGTT
EX904159       --> TTGGAGAGTGTTCAGCTTGAAGAGTGCCACAGGGTCACCCAGTTTGGGTT
FY428541       --> ..................................................
EV535826       --> ..................................................
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ..................................................

               151    -    201
UN08230        --> TTTTGGTTCTCTTTTGAACTGTGGTGCAAAGCTGAAGGCTTTCTCTATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ..................................................
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> TTTTGTTTCTCTTTTGAACTGTGGTGCAAAGCTGAAGGCTTTCTCTATGG
FY450831       --> TTTTGGTTCTCTTTTGAACTGTGGTGCAAAGCTGAAGGCTTTCTCTATGG
FY431177       --> TTTTGGTTCTCTTTTGAACTGTGGTGCAAAGCTGAAGGCTTTCTCTATGG
EX904159       --> TTTTGGTTCTCTTTTGAACTGTGGTGCAAAGCTGAAGGCTTTCTCTATGG
FY428541       --> ..................................................
EV535826       --> ..................................................
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ..................................................

               201    -    251
UN08230        --> TGAACTGTTTTGGGATTAGAGATCTCACCACTGGGTTACCTTCTTCGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ..................................................
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> TGAACTGTTTTGGGATTAGAGATCTCACCACTGGGTTACCTTCTTCGGCG
FY450831       --> TGAACTGTTTTGGGATTAGAGATCTCACCACTGGGTTACCTTCTTCGGCG
FY431177       --> TGAACTGTTTTGGGATTAGAGATCTCACCACTGGGTTACCTTCTTCGGCG
EX904159       --> TGAACTGTTTTGGGATTAGAGATCTCACCACTGGGTTACCTTCTTCGGCG
FY428541       --> .........TTGGGAT-AGAGATCTCACCACTGGGTTACCTTCTTCGGCG
EV535826       --> ..................................................
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ..................................................

               251    -    301
UN08230        --> GCTCATCGCAGTGGTCTACGCTCTCTGTCTGTTCGTAACTGCCCCGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ..................................................
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> GCTCATCGCAGTGGTCTACGCTCTCTGTCTGTTCGTAACTGCCCCGGGTT
FY450831       --> GCTCATCGCAGTGGTCTACGCTCTCTGTCTGTTCGTAACTGCCCCGGGTT
FY431177       --> GCTCATCGCAGTGGTCTACGCTCTCTGTCTGTTCGTAACTGCCCCGGGTT
EX904159       --> GCTCATCGCAGTGGTCTACGCTCTCTGTCTGTTCGTAACTGCCCCGGGTT
FY428541       --> GCTCATCGCAGTGGTCTACGCTCTCTGTCTGTTCGTAACTGCCCCGGGTT
EV535826       --> ..................................................
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ..................................................

               301    -    351
UN08230        --> TGGAGATGCGAACCTTGCTGCCCTTGGGAAGCTATGCCCTCAGCTGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ..................................................
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> TGGAGATGCGAACCTTGCTGCCCTTGGGAAGCTATGCCCTCAGCTGGAAG
FY450831       --> TGGAGATGCGAACCTTGCTGCCCTTGGGAAGCTATGCCCTCAGCTGGAAG
FY431177       --> TGGAGATGCGAACCTTGCTGCCCTTGGGAAGCTATGCCCTCAGCTGGAAG
EX904159       --> TGGAGATGCGAACCTTGCTGCCCTTGGGAAGCTATGCCCTCAGCTGGAAG
FY428541       --> TGGAGATGCGAACCTTGCTGCCCTTGGGAAGCTATGCCCTCAGCTGGAAG
EV535826       --> ..................................................
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ..................................................

               351    -    401
UN08230        --> ATATCGAGATGTGGGGGCTCAAGGGGGTGACAGAGTCTGGTTTTCTACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ..................................................
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> ATATCGAGATGTGGGGGCTCAAGGGGGTGACAGAGTCTGGTTTTCTACAT
FY450831       --> ATATCGAGATGTGGGGGCTCAAGGGGGTGACAGAGTCTGGTTTTCTACAT
FY431177       --> ATATCGAGATGTGGGGGCTCAAGGGGGTGACAGAGTCTGGTTTTCTACAT
EX904159       --> ATATCGAGATGTGGGGGCTCAAGGGGGTGACAGAGTCTGGTTTTCTACAT
FY428541       --> ATATCGAGATGTGGGGGCTCAAGGGGGTGACAGAGTCTGGTTTTCTACAT
EV535826       --> ..................................................
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ..................................................

               401    -    451
UN08230        --> CTGCTCGAGAACTCTCTTGTGAAGGTGAACTTCAGTGGCTGTTCCGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ..................................................
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> CTGCTCGAGAACTCTCTTGTGAAGGTGAACTTCAGTGGCTGTTCCGGTTT
FY450831       --> CTGCTCGAGAACTCTCTTGTGAAGGTGAACTTCAGTGGCTGTTCCGGTTT
FY431177       --> CTGCTCGAGAACTCTCTTGTGAAGGTGAACTTCAGTGGCTGTTCCGGTTT
EX904159       --> CTGCTCGAGAACTCTCTTGTGAAGGTGAACTTCAGTGGCTGTTCCGGTTT
FY428541       --> CTGCTCGAGAACTCTCTTGTGAAGGTGAACTTCAGTGGCTGTTCCGGTTT
EV535826       --> .......................GGTTAACTTCAATGGCTGTTCCGGTTT
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ..................................................

               451    -    501
UN08230        --> GACAGATAGAGCTGTCTCCGCCATCTCTGCTCGTAACGGCTCGACTCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ..................................................
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> GACAGATAGAGCTGTCTCCGCCATCTCTGCTCGTAACGGCTCGACTCTCG
FY450831       --> GACAGATAGAGCTGTCTCCGCCATCTCTGCTCGTAACGGCTCGACTCT..
FY431177       --> GACAGATAGAGCTGTCTCCGCCATCTCTGCTCGTAACGGCTCGACTCTCG
EX904159       --> GACAGATAGAGCTGTCTCCGCCATCTCTGCTCGTAACGGCTCGACTCTCG
FY428541       --> GACAGATAGAGCTGTCTCCGCCATCTCTGCTCGTAACGGCTCGACTCTCG
EV535826       --> GACAGACAGAGTTGTCTCCGCCATCTCTGCTCGTAACGGCTCGACTCTCG
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ..................................................

               501    -    551
UN08230        --> AAGTCTTGAACATGGATGGATGTAGCAAGATCTCTGACGCCAGTCTAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ................................................tc
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> AAATCTTGAACATGGATGGATGTAGCAAGATCTCTGACGCCAGTCTAGTC
FY450831       --> ..................................................
FY431177       --> AAGTCTTGAACATGGATGGATGTAGCAAGATCTCTGACGCCAGTCTAGTC
EX904159       --> AAGTCTTGAACATGGATGGATGTAGCAAGATCTCTGACGCCAGTCTAGTC
FY428541       --> AAGTCTTGAACATGGATGGATGTAGCAAGATCTCTGACGCCAGTCTAGTC
EV535826       --> AAGTCTTGAACATGGATGGATGTAGCAAGATCTCTGACGCCAGCCTAGTC
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ..................................................

               551    -    601
UN08230        --> TCAGTTGCAGCGAACTGTCAGATTCTAAGTGATTTGGATCTTTCGAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- tccatcGCAGCGAACTGCCAGATTCTAAGCGACTTGGATCTTTCGAAATG
EX908100       <-- ..................................................
EX899895       <-- ..................................................
FD568573       --> TCAGTTGCAGCGAACTGTCAGATTCTAAGTGATTTGGATCTTTCGAAATG
FY450831       --> ..................................................
FY431177       --> TCAGTTGCAGCGAACTGTCAGATTCTAAGTGATTTGGATCTTTCGAAATG
EX904159       --> TCAGTTGCAGCGAACTGTCAGATTCTAAGTGATTTGGATCTTTCGAAATG
FY428541       --> TCAGTTGCAGCGAACTGTCAGATTCTAAGTGATTTGGATCTTTCGAAATG
EV535826       --> TCCATCGCAGCGAACTGCCAGATTCTAAGCGACTTGGATCTTTCGAAATG
EX895879       --> ..gGTTGCAGCGAACTGTCAGATTCTAAGTGATTTGGATCTTTCGAAATG
FD551126       --> ..................................................
FY442839       --> ..................................................

               601    -    651
UN08230        --> CTCGGTCTCAGATTCTGGAGTTCAAGCTTTGGCTTCCTCTGAAAAACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- CTCGGTCTCAGATTCCGGAGTTCAAGCGTTGGCTTCCTCTGAAAAACTCA
EX908100       <-- ........................................GAAAAACTCA
EX899895       <-- ..................................................
FD568573       --> CTCGGTCTCAGATTCTGGAGTTCAAGCTTTGGCTTCCTCTGAAAA-CTCA
FY450831       --> ..................................................
FY431177       --> CTCGGTCTCAGATTCTGGAGTTCAAGCTTTGGCTTCCTCTGAAAAACTCA
EX904159       --> CTCGGTCTCAGATTCTGGAGTTCAAGCTTTGGCTTCCTCTGAAAAACTCA
FY428541       --> CTCGGTCTCAGATTCTGGAGTTCAAGCTTTGGCTTCCTCTGAAAAACTCA
EV535826       --> CTCGGTCTCAGATTCCGGAGTTCAAGCGTTGGCTTCCTCTGAAAAACTCA
EX895879       --> CTCGGTCTCAGATTCTGGAGTTCAAGCTTTGGCTTCCTCTGAAAAACTCA
FD551126       --> ..................................................
FY442839       --> ..................................................

               651    -    701
UN08230        --> AACTGCAGATCCTATCCATGGCGGGTTGCTCTATGGTCACCGACAAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- AACTGCAGATCCTATCCGTGGCGGGTTGCTCTATGGTCACTGACAAGAGC
EX908100       <-- AACTGCAGATCCTATCCATGGCGGGTTGCTCTATGGTCACCGACAAGAGC
EX899895       <-- ...................................GTCAC-GACAAGAGC
FD568573       --> AACTGCA...........................................
FY450831       --> ..................................................
FY431177       --> AACTGCAGATCCTATCCATGGCGGGTTGCTCTATGGTCACCGACAAGAGC
EX904159       --> AACTGCAGATCCTATCCATGGCGGGTTGCTCTATGGTCACCGACAAGAGC
FY428541       --> AACTGCAGATCCTATCCATGGCGGGTTGCTCTATGGTCACCGACAAGAGC
EV535826       --> AACTGCAGATCCTATCCGTGGCGGGTTGCTCTATGGTCACTGACAAGAGC
EX895879       --> AACTGCAGATCCTATCCATGGCGGGTTGCTCTATGGTCACCGACAAGAGC
FD551126       --> ............TATCCATGGCGGGTTGCTCTATGGTCACCGACAAGAGC
FY442839       --> ..................................................

               701    -    751
UN08230        --> TTACCAGCAATCCTTAAGCTGGGTTCGACTTTACTCGGATTAAATCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- TTACCAGCAATCGTTAAGCTGGGTTCGACTTTACTCGGATTAAATCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX908100       <-- TTACCAGCAATCCTTAAGCTGGGTTCGACTTTACTCGGATTAAATCTCCA  Raphanus sativus cv Rat-Tail Radish #3870
EX899895       <-- TTACCAGCCATCGTTAAGCTGGGTTCGACTTTACTCGGATTAAATCTCCA  Raphanus sativus cv Early Scarlet Globe
FD568573       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY450831       --> ..................................................  Raphanus sativus cv GSK3-1
FY431177       --> TTACCAGCAATCCTTAAGCTGGGTTCGACTTTACTCGGATTAAATCTCCA  Raphanus sativus cv GSK3-1
EX904159       --> TTACCAGCAATCCTTAAGCTGGGTTCGACTTTACTCGGAT-AAATCTCCA  Raphanus sativus cv Rat-Tail Radish #3870
FY428541       --> TTACCAGCAATCCTTAAGCTGGGTTCGACTTTACTCGGATTAAATCTCCA  Raphanus sativus cv GSK3-1
EV535826       --> TTACCAGCAATCGTTAAGCTGGGTTCGACTTTACTCGGATTAAATCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX895879       --> TTACCAGCCATCGTTAAGCTGGGTTCGACTTTACTCGGATTAAATCTCCA  Raphanus sativus cv Early Scarlet Globe
FD551126       --> TTACCAGCAATCCTTAAGCTGGGTTCGACTTTACTCGGATTAAATCTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY442839       --> ..................................................  Raphanus sativus cv GSK3-1

               751    -    801
UN08230        --> ACAGTGCCGATCCATTTCCACTTCCACTGTCGACTTCTTAGTCGAGCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ACAGTGCCGATCCATTTCCACTTCCACTGTCGACTTCTTAGTCGAGAGGC
EX908100       <-- ACAGTGCCGATCCATTTCCACTTCCACTGTCGACTTCTTAGTCGAGCGGC
EX899895       <-- ACAGTGCCGATCCATTTCCACTTCCACCGTCGACTTCTTAGTCGAGCGGC
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ACAGTGCCGATCCATTTCCACTTCCACTGTCGACTTCTTAGTCGAGCGGC
EX904159       --> ACAGTGCCGATCCATTTCCACTTCCACTGTCGACTTCTTAGTCGAGCGGC
FY428541       --> ACAGTGCCGATCCATTTCCACTTCCACTGTCGACTTCTTAGTCGAGCGGC
EV535826       --> ACAGTGCCGATCCATTTCCACTTCCACTGTCGACTTCTTAGTCGAGAGGC
EX895879       --> ACAGTGCCGATCCATTTCCACTTCCACCGTCGACTTCTTAGTCGAGCGGC
FD551126       --> ACAGTGCCGATCCATTTCCACTTCCACTGTCGACTTCTTAGTCGAGAGGC
FY442839       --> .............................TCGACTTCTTAGTCGAGCGGC

               801    -    851
UN08230        --> TTTACAAATGCGACATCCTCTCCTGATCC-ACCAATTCCACGTTCAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- TTTACAAATGCGACATCCTCTCCTGATCCCACCAATTCCACGTTCAACTT
EX908100       <-- TTTACAAATGCGACATCCTCTCCTGATCC-ACCAATTCCACGTTCAACTT
EX899895       <-- TTTACAAATGCGACATCCTCTCCTGATCC-ACCAGTTCCACGTTCAACTT
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> TTTACAAATGCGACATCCTCTCCTGA........................
EX904159       --> TTTACAA...........................................
FY428541       --> TTTACAAATGCGACATCCTCTCCTGATCC-ACCAATTCCACGTTCAACTT
EV535826       --> TTTACAAATGCGACATCCTCTCCTGATCCCACCAATTCCACGTTCAACTT
EX895879       --> TTTACAAATGCGACATCCTCTCCTGATCC-ACCAGTTCCACGTTCAACTT
FD551126       --> TTTACAAATGCGACATCCTCTCCTGATCC-ACCAATTCCACGTTCAACTT
FY442839       --> TTTACAAATGCGACATCCTCTCCTGATCC-ACCAATTCCACGTTCAACTT

               851    -    901
UN08230        --> TATCC-ACCCTATAATAATAGTA-CTGTTCCAAGTTAAGTGTCAGCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- TATCC-ACCCTATAATAATAGTA-CTGTTCCAAGTTAAGTGTCAGCTTCC
EX908100       <-- TATCC-ACCCTATAATAATAGTA-CTGTTCCAAGTTAAGTGTCAGCTTCC
EX899895       <-- TATCCCACCCTATAATAATAGTATCTGTTCCAAGTTAAGTGTCAGCTTCC
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ..................................................
EX904159       --> ..................................................
FY428541       --> TATCC-ACCCTATAATAATAGTA-CTGTTCCAAGTTAAGTGTCAGCTTCC
EV535826       --> TATCC-ACCCTATAATAATAGTA-CTGTTCCAAGTTAAGTGTCAGCTTCC
EX895879       --> TATCCCACCCTATAATAATAGTATCTGTTCCAAGTTAAGTGTCAGCTTCC
FD551126       --> TATCC-ACCCTATAATAATAGTA-CTGTTCCAAGTTAAGTGTCAGCTTCC
FY442839       --> TATCC-ACCCTATAATAATAGTA-CTGTTCCAAGTTAAGTGTCAGCTTCC

               901    -    951
UN08230        --> TTTTCAGGTGTGTCTCTCTC--GCTAGGCTCAGGTATTACCCGGTTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- TTTTCAGGTGTGTCTCTCTCTCGCTAGGCTCAGGTATTACCCGGTTTTTC
EX908100       <-- TTTTCAGGTGTGTCTCTCTC--GCTAGGCTCAGGTATTACCCGGTTTTTC
EX899895       <-- TTTTCAGGTGTGTCTCTCTC--GCTAGGCTCAGGTATTACCCGGTTTTTC
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ..................................................
EX904159       --> ..................................................
FY428541       --> TTTTCAGGTGTGTCTCTCTC--GCTAGGCTCAGGTATTACCCGGTTTTTC
EV535826       --> TTTTCAGGTGTGTCTCTCTCTCGCTAGGCTCAGGTATTACCCGGTTTTTC
EX895879       --> TTTTCAGGTGTGTCTCTCTC--GCTAGGCTCAGGTATTACCCGGTTTTTC
FD551126       --> TTTTCA............................................
FY442839       --> TTTTCAGGTGTGTCTCTCTC--GCTAGGCTCAGGTATTACCCGGTTTTTC

               951    -   1001
UN08230        --> CAAGTGGTTCGGCTTCCGGTTTCTTTTTCCAGTCAATGTTGTTTTTGC-A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- CAAGTGGTTCGGCTTCCGGTTTCTTTTTCCAGTCAATGTTGTTTTTGCTA
EX908100       <-- CAAGTGGTTCGGCTTCCGGTTTCTTTTTCCAGTCAATGTTGTTTTTGC-A
EX899895       <-- CAAGTGGTTCGGCTTCCGGTTTCTTTTTCCAGTCAATGTTGTTTTTGC-A
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ..................................................
EX904159       --> ..................................................
FY428541       --> CAAGTGGTTCGGCTTCCGGTTTCTTTTTCCAGTCAATGTTGTTTTTGC-A
EV535826       --> CAAGTGGTTCGGCTTCCGGTTTCTTTTTCCAGTCAATGTTGTTTTTGCTA
EX895879       --> CAAGTGGTTCGGCTTCCGGTTTCTTTTTCCAGTCAATGTTGTTTTTGC-A
FD551126       --> ..................................................
FY442839       --> CAAGTGGTTCGGCTTCCGGTTTCTTTTTCCAGTCAATGTTGTTTTTGC-A

               1001   -   1051
UN08230        --> GAGTTTCCCTGAAACTCTAGCTTACCATGAAACCGGAAATGTCGTGTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- GAGTTTCCCTGAAACCCTAGCTTACCATGAAACCGGAAATGTCGTGTGGT
EX908100       <-- GAGTTTCCCTGAAACTCTAGCTTACCATGAAACCGGAAATGTCGTGTGGT
EX899895       <-- GAGTTTCCCTGAAACTCTAGCTTACCATGAAACCGGAAATGTCGTGTGGT
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ..................................................
EX904159       --> ..................................................
FY428541       --> GAGTTTCCCTGAAACTCTAGCTTACCATGAAACCGGAAATGTCGTGTGGT
EV535826       --> GAGTTTCCCTGAAACCCTAGCTTACCATGAAACCGGAAATGTCGTGTGGT
EX895879       --> GAGTTTCCCTGAAACTCTAGCTTACCATGAAACCGGAAATGTCGTGTGGT
FD551126       --> ..................................................
FY442839       --> GAGTTTCCCTGAAACTCTAGCTTACCATGAAACCGGAAATGTCGTGTGGT

               1051   -   1101
UN08230        --> TGCTTGAGAATATACTTTACCGGGTATTACCGAGATTTTAGGGTTTATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- TGCTTGAGAATATACTTTACCGGGTATTACCGAGATTTTAGGGTTTATCA
EX908100       <-- TGCTTGAGAATATACTTTACCGGGTATTACCGAGATTTTAGGGTTTATCA
EX899895       <-- TGCTTGAGAATATACTTTACCGGGTATTACCGAGATTTTAGGGTTTATCA
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ..................................................
EX904159       --> ..................................................
FY428541       --> TGCTTGAGAATATACTTTACCGGGTATTACCGAGATTTTAGGGTTTATCA
EV535826       --> TGCTTGAGAATATACTTTACCGGGTATTACCGAGATTTTAGGGTTTATCA
EX895879       --> TGCTTGAGAATATACTTTACCGGGTATTACCGAGATTTTAGGGTTTATCA
FD551126       --> ..................................................
FY442839       --> TGCTTGAGAATATACTTTACCGGGTATTACCGAGATTTTAGGGTTTATCA

               1101   -   1151
UN08230        --> TCTCCTGTTTGGTTTGTTTTATGCGTTGCTTTTGTCTTGTTGAAGTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- TCTCCTGTTTGGTTTGTTTTATGCGTTGCTTTTGTCTTGTTGAAGTTTGG
EX908100       <-- TCTCCTGTTTGGTTTGTTTTATGCGTTGCTTTTGTCTTGTTGAAGTTTGG
EX899895       <-- TCTCCTGTTTGGTTTGTTTTATGCGTTGCTTTTGTCTTGTTGAAGTTTGG
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ..................................................
EX904159       --> ..................................................
FY428541       --> TCTCCTGTTGGGTTTGTTTTATGCGTTGCTTT..................
EV535826       --> TCTCCTGTTTGGTTTGTTTTATGCGTTGCTTTTGTCTTGTTGAAGTTTGG
EX895879       --> TCTCCTGTTTGGTTTGTTTTATGCGTTGCTTTTGTCTTGTTGAAGTTTGG
FD551126       --> ..................................................
FY442839       --> TCTCCTGTTTGGTTTGTTTTATGCGTTGCTTTTGTCTTGTTGAAGTTTGG

               1151   -   1201
UN08230        --> TTTTCCTCGAAAGGGTCTTTGTGTGATGTGTACGTGTTCAAGATTCTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- TTTTCCTCGAAAGGGTCTTTGTGTGACGTGTACGTCTTCAAGATTCTTGT
EX908100       <-- TTTTCCTCGAAAGGGTCTTTGTGTGATGTGTACGTGTTCAAGATTCTTGT
EX899895       <-- TTTTCCTCGAAAGGGTCTTTGTGTGATGTGTACGTGTTCAAGATTCTTGT
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ..................................................
EX904159       --> ..................................................
FY428541       --> ..................................................
EV535826       --> TTTTCCTCGAAAGGGTCTTTGTGTGACGTGTACGTCTTC...........
EX895879       --> TTTTCCTCGAAAGGGTCTTTGTGTGATGTGTACGTGTTCAAGATTCTTGT
FD551126       --> ..................................................
FY442839       --> TTTTCCTCGAAAGGGTCTTTGTGTGATGTGTACGTGTTCAAGATTCTTGT

               1201   -   1251
UN08230        --> TCAGGTTGCCATGGGTTCTTTCTTAGAGGTTTGCTCTGGCTTTTGTTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- TCAGGTTGCCATGGGTTCTTTCTTAGAGGTTTGCTCTGGCTTTTGTTGCA
EX908100       <-- TCAGGTTGCCATGGGTTCTTTCTTAGAGGTTTGCTCTGGCTTTTGTTGCA
EX899895       <-- TCAGGTTGCCATGGGTTCTTTCTTAGAGGTTTGCTCTGGCTTTTGTTGCA
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ..................................................
EX904159       --> ..................................................
FY428541       --> ..................................................
EV535826       --> ..................................................
EX895879       --> TCAG-TTGCCATGGGTTCTTTCTT..........................
FD551126       --> ..................................................
FY442839       --> TCAGGTTGCCATGGGTTCTTTCTTAGAGGTTTGCTCTGGCTTTTGTTGCA

               1251   -   1301
UN08230        --> ACAAACTCACTCTATTATAGAGTTTTTT-ATTTGTTGTCTTTTTTTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ACAAACTCACTCTATTATAGAGTTTTTT-CTTTGTTGTTGTTTCTTTTTG
EX908100       <-- ACAAACTCACTCTATTATAGAGTTTTTTTATTTGTTGTCTTTTTTTTT-G
EX899895       <-- ACAAACTCACTCTATTATAGAGTTTTTT-ATTTGTTGTCTTTTTTTTTTG
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ..................................................
EX904159       --> ..................................................
FY428541       --> ..................................................
EV535826       --> ..................................................
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> ACAAACTCACTCTATTATAGAGTTTTTT-ATTTGTTGTCTTTTTTTTTTG

               1301   -   1351
UN08230        --> CCAGAGCCCTCGTGTTTTTTT--CCCCAGGCACTGTATTACGATCTGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- CCAGAGCCCTCGTGTTTTTTTTTCCCCAGGCACTGTATTACGATCTGTGT
EX908100       <-- CCAGAGCCCTCGTGTTTTTTT--CCCCAGGCACTGTATTACGATCTGTGT
EX899895       <-- CCAGAGCCCTCGTGTTTTTTT--CCCCAGGCACTGTATTACGATCTGTGT
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ..................................................
EX904159       --> ..................................................
FY428541       --> ..................................................
EV535826       --> ..................................................
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> CCAGAGCCCTCGTGTTTTTTT--CCCCAGGCACTGTATTACGATCTGTGT

               1351   -   1401
UN08230        --> GAACACTGTACTAAGTTATGTATATGCCCTTTGGGATGGTTTAATGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- GAACACTGTACTAAGTTATGTATATGCCCTTTGGGATGGTTTAATGAAGT
EX908100       <-- GAACACTGTACTAAGTTATGTATATGCCCTTTGGGATGGTTTAATGAAGT
EX899895       <-- GAACACTGTACTAAGTTATGTATATGCCCTTTGGGATGGTTTAATGAAGT
FD568573       --> ..................................................
FY450831       --> ..................................................
FY431177       --> ..................................................
EX904159       --> ..................................................
FY428541       --> ..................................................
EV535826       --> ..................................................
EX895879       --> ..................................................
FD551126       --> ..................................................
FY442839       --> GAACACTGTACTAAGTTATGTATATGCCCTTTGGGATGGTTTAATGAAGT

               1401   -   1451
UN08230        --> ATTGAATAAAATTATCATTTCGTTG.
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540407       <-- ATTGAATAAAATTATCATTTCGTTGt
EX908100       <-- ATTGAATAAA-TTATCATTTC.....
EX899895       <-- ATTGAATAAAATTATCATTTCGTTGc
FD568573       --> ..........................
FY450831       --> ..........................
FY431177       --> ..........................
EX904159       --> ..........................
FY428541       --> ..........................
EV535826       --> ..........................
EX895879       --> ..........................
FD551126       --> ..........................
FY442839       --> ATTGAATAAAATTATCATTTCGTTGt