Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN08236

               1      -     51
UN08236        --> GGAACACTATTATATAATAGCTTTATAGATAAGTTGATAAAACCTTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- .................................................C
EX747934       <-- ..................................................
EV531297       --> GGAACACTATTATATAATAGCTTTATAGATAAGTTGATAAAACCTTTTTC
EX775570       --> ...............................gGTTGATAAAACCTTTTTC
EX752007       --> ..................................aGATAAAACCTTTTTC
FD555761       --> ...................................ggTAAAACCTTTTTC
FD984254       --> ...................................ggTAAAACCTTTTTC

               51     -    101
UN08236        --> TTATACAAATAGTAATAGCTTGATTACGTCTCTTACAAACGACCACAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- TTATACAAATAGTAATAGCTTGATTACGTCTCTTACAAACGACCACAATA  Raphanus raphanistrum subsp. maritimus
EX747934       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV531297       --> TTATACAAATAGTAATAGCTTGATTACGTCTCTTACAAACGACCACAATA  Raphanus raphanistrum subsp. maritimus
EX775570       --> TTATACAAATAGT----GCTTGATTACGTCTCTTACAAACGACCACAATA  Raphanus raphanistrum subsp. landra
EX752007       --> TTATACAAATAGTAATAGCTTGATTACGTCTCTTACAAACGACCACAATA  Raphanus raphanistrum subsp. maritimus
FD555761       --> TTATACAAATAGT----GCTTGATTACGTCTCTTACAAACGACCACAATA  Raphanus raphanistrum subsp. landra
FD984254       --> TTATACAAATAGT----GCTTGATTACGTCTCTTACAAACGACCACAATA  Raphanus raphanistrum subsp. landra

               101    -    151
UN08236        --> TAACAAGCACCTAATAATAATAATACATTGACGACCAAGATGGAACACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- TAACAAG----CACTAATAATAATACATTGACGACCAAGATGGAACACTT
EX747934       <-- ..................................................
EV531297       --> TAACAAGCACCTAATAATAATA---CATTGACGACCAAGATGGAACACTT
EX775570       --> TAACAAGCACCTAATAATAATAATACATTGACGACCAAGATGGAACACTT
EX752007       --> TAACAAGCACCTAATAATAATA---CATTGACGACCAAGATGGAACACTT
FD555761       --> TAACAAGCACCTAATAATAATAATACATTGACGACCAAGATGGAACACTT
FD984254       --> TAACAAGCACCTAATAATAATAATACATTGACGACCAAGATGGAACACTT

               151    -    201
UN08236        --> ACAATACCATCTATTCACACAGTACCACTTTATCAGAATCCTCTCTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- ACAGTACCATCTATTCACACAATACCACTTTATCAGAATCCTCTCTGCTT  Raphanus raphanistrum subsp. maritimus
EX747934       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV531297       --> ACAGTACCATCTATTCACACAATACCACTTTATCAGAATCCTCTCTGCTT  Raphanus raphanistrum subsp. maritimus
EX775570       --> ACAATACCATCTATTCACACAGTACCACTTTATCAGAATCCTCTCTGCTT  Raphanus raphanistrum subsp. landra
EX752007       --> ACAATACCATCTATTCACACAATACCACTTTATCAGAATCCTCTCTGCTT  Raphanus raphanistrum subsp. maritimus
FD555761       --> ACAATACCATCTATTCACACAGTACCACTTTATCAGAATCCTCTCTGCTT  Raphanus raphanistrum subsp. landra
FD984254       --> ACAATACCATCTATTCACACAGTACCACTTTATCAGAATCCTCTCTGCTT  Raphanus raphanistrum subsp. landra

               201    -    251
UN08236        --> TTTTCCAGCAGCCTTTTTTGGTGATGTTGTCTGCAGTACCGTTGATGCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- TTTTCCAGCAGCCTTTTTTGGTGATGTTGTCTGCAGTACCGTTGATGCGC  Raphanus raphanistrum subsp. maritimus
EX747934       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV531297       --> TTTTCCAGCAGCCTTTTTTGGTGATGTTGTCTGCAGTACCGTTGATGCGC  Raphanus raphanistrum subsp. maritimus
EX775570       --> TTTTCCAGCAGCCTTTTTTGGTGATGTTGCCTGCAGTACCGTTGATGCGC  Raphanus raphanistrum subsp. landra
EX752007       --> TTTTCCAGCAGCCTTTTTTGGTGATGTTGTCTGCAGTACCGTTGATGCGC  Raphanus raphanistrum subsp. maritimus
FD555761       --> TTTTCCAGCAGCCTTTTTTGGTGATGTTGCCTGCAGTACCGTTGATGCGC  Raphanus raphanistrum subsp. landra
FD984254       --> TTTTCCAGCAGCCTTTTTTGGTGATGTTGCCTGCAGTACCGTTGATGCGC  Raphanus raphanistrum subsp. landra

               251    -    301
UN08236        --> CCATCGACCTGAGGTTCTCCAGCAAAGTGTCTCTCCCCGACAAGAGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- CCATCGACCTGAGGTTCTCCAGCAAAGTGTCTCTCCCCGACAAGAGAATC
EX747934       <-- ..................................................
EV531297       --> CCATCGACCTGAGGTTCTCCAGCAAAGTGTCTCTCCCCGACAAGAGAATC
EX775570       --> CCATCGACCTGAGGTTCTCCAGCAAAGTGTCTCTCCCCGACAAGAGAATC
EX752007       --> CCATCGACCTGAGGTTCTCCAGCAAAGTGTCTCTCCCCGACAAGAGAATC
FD555761       --> CCATCGACCTGAGGTTCTCCAGCAAAGTGTCTCTCCCCGACAAGAGAATC
FD984254       --> CCATCGACCTGAGGTTCTCCAGCAAAGTGTCTCTCCCCGACAAGAGAATC

               301    -    351
UN08236        --> TTGAAGAAGCAATCCACCTTCTTGGAAACAAGGTCTATCCCACTCGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- TTGAAGAAGCAATCCACCTTCTTGGAAACAAGGTCTATCCCACTCGTTAA  Raphanus raphanistrum subsp. maritimus
EX747934       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV531297       --> TTGAAGAAGCAATCCACCTTCTTGGAAACAAGGTCTATCCCACTCGTTAA  Raphanus raphanistrum subsp. maritimus
EX775570       --> TTGAAGAAGCAATCCACCTCCTTGGAAACAAGGTCTATCCCACTCGTTAA  Raphanus raphanistrum subsp. landra
EX752007       --> TTGAAGAAGCAATCCACCTTCTTGGAAACAAGGTCTATCCCACTCGTTAA  Raphanus raphanistrum subsp. maritimus
FD555761       --> TTGAAAAAGCAATCCACCTCCTTGGAAACAAGGTCTATCCCACTCGTTAA  Raphanus raphanistrum subsp. landra
FD984254       --> TTGAAGAAGCAATCCACCTCCTTGGAAACAAGGTCTATCCCACTCGTTAA  Raphanus raphanistrum subsp. landra

               351    -    401
UN08236        --> CTCCGTGACCGAGTCCTTCAATGGCTGCAGCACGATGGGATCTATTGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- CTCCGTGACCGAGTCCTTCAATGGCTGCAGCACGATGGGATCTATTGACC
EX747934       <-- ..................................................
EV531297       --> CTCCGTGACCGAGTCCTTCAATGGCTGCAGCACGATGGGATCTATTGACC
EX775570       --> CTCCGTGACCGAGTCCTTCAATGGCTGCAGCACGATGGGATCTATTGACC
EX752007       --> CTCCGTGACCGAGTCCTTCAATGGCTGCAGCACGATGGGATCTATTGACC
FD555761       --> CTCCGTGACCGAGTCCTTCAATGGATGCAGCACGATGGGATCTATTGACC
FD984254       --> CTCCGTGACCGAGTCCTTCAATGGATGCAGCACGATGGGATCTATTGACC

               401    -    451
UN08236        --> CTTGTTGGATCGCAGGAGCAAGTTCCTTAACACCTGAATCAACAGCCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- CTTGTTGGATCGCAGGAGCAAGTTCCTTAACACCTGAATCAACAGCCTCG
EX747934       <-- ..................................................
EV531297       --> CTTGTTGGATCGCAGGAGCAAGTTCCTTAACACCTGAATCAACAGCCTCG
EX775570       --> CTTGTTGGATCGCAGGAGCAAGTTCCTTAACACCTGAATCAACAGCCTCG
EX752007       --> CTTGTTGGATCGCAGGAGCAAGTTCCTTAACACCTGAATCAACAGCCTCG
FD555761       --> CTTGTTGGATCGCAGGAGCAAGTTCCTTAACACCTGAATCAACAGCCTCG
FD984254       --> CTTGTTGGATCGCAGGAGCAAGTTCCTTAACACCTGAATCAACAGCCTCG

               451    -    501
UN08236        --> AGCTCTTTCATAACGGTTAAACCGTCAGATAAAAAGATGCTCTTGATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- AGCTCTTTCATAACGGTTAAACCGTCAGATAAAAAGATGCTCTTGATCTC
EX747934       <-- ..................................................
EV531297       --> AGCTCTTTCATAACGGTTAAACCGTCAGATAAAAAGATGCTCTTGATCTC
EX775570       --> AGCTCTTTCATAACGGTTAAACCGTCAGATAAAAAGATGCTCTTGATCTC
EX752007       --> AGCTCTTTCATAACGGTTAAACCGTCAGATAAAAAGATGCTCTTGATCTC
FD555761       --> AGCTCTTTCATAACGGTTAAACCGTCAGATAAAAAGATGCCCTTGATCTC
FD984254       --> AGCTCTTTCATAACGGTTAAACCGTCAGATAAAAAGATGCCCTTGATCTC

               501    -    551
UN08236        --> TGCGTTCATCGTGTTCTGCATTTGCATGAAGGATGGTGCCCATGGAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- TGCGTTCATCGTGTTCTGCATTTGCATGAAGGATGGTGCCCATGGAAGAT
EX747934       <-- ..................................................
EV531297       --> TGCGTTCATCGTGTTCTGCATTTGCATGAAGGATGGTGCCCATGGAAGAT
EX775570       --> TGCGTTCATCGTGTTCTGCATTTGCATGAAGGATGGTGCCCATGGAAGAT
EX752007       --> TGCGTTCATCGTGTTCTGCATTTGCATGAAGGATGGTGCCCATGGAAGAT
FD555761       --> TGCGTTCATCGTGTTCTGCATTTGCATGA.....................
FD984254       --> TGCGTTCATCGTGTTCTGCATTTGCATGAAGGATGGTGCCCATGGAAGAT

               551    -    601
UN08236        --> CGTTTGAGACCGTAACGTACAACAGGTTCTGCGATGAACCTGAGAAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- CGTTTGAGACCGTAACGTACAACAGGTTCTGCGATGAACCTGAGAAGGCA
EX747934       <-- ..................................................
EV531297       --> CGTTTGAGACCGTAACGTACAACAGGTTCTGCGATGAACCTGAGAAGGCA
EX775570       --> CGTTTGAGACCGTAACGTACAACAGGTTCTGCGATGAACCTGAGAAGGCA
EX752007       --> CGTTTGAGAACGTAACGTACAACAGGTTCTGCGATGAACCTGAGAAGGCA
FD555761       --> ..................................................
FD984254       --> CGTTTGAGACCGTAACGTACAACAGGTTCTGCGATGAACCTGAGAAGGCA

               601    -    651
UN08236        --> GCAGCGAAAACACCAGAAATGTACAAAGTCTTGACCTTGACACCGTAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- GCAGCGAAAACACCAGAAATGTACAAAGTCTTGACCTTGACACCGTAAAG
EX747934       <-- ..................................................
EV531297       --> GCAGCGAAAACACCAGAAATGTACAAAGTCTTGACCTTGACACCGTAAAG
EX775570       --> GCAGCGAAAACACCAGAAATGTACAAAGTCTTGACCTTGACACCGTAAAG
EX752007       --> GCAGCGAAAACACCAGAAATGTACAAAGTCTTGACCTTGACACCGTAAAG
FD555761       --> ..................................................
FD984254       --> GCAGCGAAAACACCAGAAATGTACAAAGTCTTGACCTTGACACCGTAAAG

               651    -    701
UN08236        --> AGCACGCATCAGGACTTTTCCTTTGGCAGAGTTTTTCACCTTGGGG-AGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- AGCACGCATCAGGACTTTTCCTTTGGCAGAGTTTTTCACCTTGGGG-AGA
EX747934       <-- ....................................CACCTTGGGG-AGA
EV531297       --> AGCACGCATCAGGACTTTTCCTTTGGCAGAGTTTTTCACCTTGGGGGAGA
EX775570       --> AGCACGCATCAGGACTTTTCCTTTGGCAGAGTCTTTCACCTTGGGG-AGA
EX752007       --> AGCACGCATCAGGACTTTTCCTTTGGCAGAGTTTTTCACCTTGGGG-AGA
FD555761       --> ..................................................
FD984254       --> AGCACG............................................

               701    -    751
UN08236        --> TTCAAGGTCTGAACAAGGCTGGTCAGGATTGAATGACAGCTTTCCAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- TTCAAGGTCTGAACAAGGCTGGTCAGGATTGAATGACAGCTTTCCAACCT
EX747934       <-- TTCAAGGTCTGAACAAGGCTGGTCAGGATTGAATGACAGCTTTCCAACCT
EV531297       --> TTCAA.............................................
EX775570       --> TTCAAGGTCTGAACAAGGGTGGTCAGGATTGAATGACAGCTTTCCAACCT
EX752007       --> TTCAAGGTCTGAACAAGGCTGGTCAGGATTGAATGACAGCTTTCCAACCT
FD555761       --> ..................................................
FD984254       --> ..................................................

               751    -    801
UN08236        --> CGGGTTCTTGGAAACGATGTGTCGCTTCCAGGAGTCGAGGGACGATTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- CGGGTTCTTGGAAACGATGTGTCGCTTCCAGGAGTCGAGGGACGATTGAG
EX747934       <-- CGGGTTCTTGGAAACGATGTGTCGCTTCCAGGAGTCGAGGGACGATTGAG
EV531297       --> ..................................................
EX775570       --> CGGGTTCTTGGAAACGATGTGTTGCTTCCAGGAGTCGAGGGAGGATgctt
EX752007       --> CGGGTTCTTGGAAACGATGTGTCGCTTCCAGGAGTCGAGGGACGATTGAG
FD555761       --> ..................................................
FD984254       --> ..................................................

               801    -    851
UN08236        --> CTTTGGAAAGATTCTGAGGAGCGTTCGTGTCCAAGTTATGCAAAGCAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- CTTTGGAAAGATTCTGAGGAGCGTTCGTGTCCAAGTTATGCAAAGCAAAC
EX747934       <-- CTTTGGAAAGATTCTGAGGAGCGTTCGTGTCCAAGTTATGCAAAGCAAAC
EV531297       --> ..................................................
EX775570       --> tggaa.............................................
EX752007       --> CTTTGGAAAGAT-CTGAGGAGCGT-CGTGTCCAAGTTATGCAAAGCAAAC
FD555761       --> ..................................................
FD984254       --> ..................................................

               851    -    901
UN08236        --> TGGAGAAAGAGATGGCCTTGGTTGAGGCGGCTAAGCTCAGAGCTAAAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- TGGc..............................................
EX747934       <-- TGGAGAAAGAGATGGCCTTGGTTGAGGCGGCTAAGCTCAGAGCTAAAGGC
EV531297       --> ..................................................
EX775570       --> ..................................................
EX752007       --> TGGAGAA-GAGATGGCCTTGGTTGAGGCGGCTAAGCTCAGAGCT......
FD555761       --> ..................................................
FD984254       --> ..................................................

               901    -    951
UN08236        --> GTTGCAGAGGTCAAGGAGCTTGACGCTGATGTCTAGGTAGACATCGACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- ..................................................
EX747934       <-- GTTGCAGAGGTCAAGGAGCTTGACGCTGATGTCTAGGTAGACATCGACCC
EV531297       --> ..................................................
EX775570       --> ..................................................
EX752007       --> ..................................................
FD555761       --> ..................................................
FD984254       --> ..................................................

               951    -   1001
UN08236        --> ACTTGTCCCCCCAGTCAGAGACAGGAAGCTCAATAGCGGTTATAAGAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- ..................................................
EX747934       <-- ACTTGTCCCCCCAGTCAGAGACAGGAAGCTCAATAGCGGTTATAAGAGTC
EV531297       --> ..................................................
EX775570       --> ..................................................
EX752007       --> ..................................................
FD555761       --> ..................................................
FD984254       --> ..................................................

               1001   -   1051
UN08236        --> TTGATAGCATCGTGGGTCTGGCAAAGAGAAACCATAGCTTGACTCATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- ..................................................
EX747934       <-- TTGATAGCATCGTGGGTCTGGCAAAGAGAAACCATAGCTTGACTCATCCA
EV531297       --> ..................................................
EX775570       --> ..................................................
EX752007       --> ..................................................
FD555761       --> ..................................................
FD984254       --> ..................................................

               1051   -   1101
UN08236        --> TGAAAGAGTGAGGATTTGGGACTTTTCCGTAGGGACAAGCTTTGAGATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- ..................................................
EX747934       <-- TGAAAGAGTGAGGATTTGGGACTTTTCCGTAGGGACAAGCTTTGAGATGG
EV531297       --> ..................................................
EX775570       --> ..................................................
EX752007       --> ..................................................
FD555761       --> ..................................................
FD984254       --> ..................................................

               1101   -   1151
UN08236        --> AAGAAGCTAAGTTGGTCTCGAAAGTGTTCAAGAGGGAGAGAAGCTTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- ..................................................
EX747934       <-- AAGAAGCTAAGTTGGTCTCGAAAGTGTTCAAGAGGGAGAGAAGCTTAGAG
EV531297       --> ..................................................
EX775570       --> ..................................................
EX752007       --> ..................................................
FD555761       --> ..................................................
FD984254       --> ..................................................

               1151   -   1201
UN08236        --> GATAGTACGGGGTTCTTGGAAGAGAGGTTCTTGAAAGGGTTTCCAAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- ..................................................
EX747934       <-- GATAGTACGGGGTTCTTGGAAGAGAGGTTCTTGAAAGGGTTTCCAAAAGG
EV531297       --> ..................................................
EX775570       --> ..................................................
EX752007       --> ..................................................
FD555761       --> ..................................................
FD984254       --> ..................................................

               1201   -   1251
UN08236        --> GAAGAAACCGCGTGGAGGGTCTTGTGGACGTGCCATCTTATAAAGTTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- ..................................................
EX747934       <-- GAAGAAACCGCGTGGAGGGTCTTGTGGACGTGCCATCTTATAAAGTTTCA
EV531297       --> ..................................................
EX775570       --> ..................................................
EX752007       --> ..................................................
FD555761       --> ..................................................
FD984254       --> ..................................................

               1251   -   1301
UN08236        --> ACTAAAGTGAAGAAGAACGAAACTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~
EV526950       <-- ..........................
EX747934       <-- ACTAAAGTGAAGAAGAACGAAACTCC
EV531297       --> ..........................
EX775570       --> ..........................
EX752007       --> ..........................
FD555761       --> ..........................
FD984254       --> ..........................