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Alignment for radish unigene UN08277

               1      -     51
UN08277        --> GATGACTGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTGTGTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX754047       <-- GATGACTGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTGTGTAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770431       <-- ...GACTGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTATGTAAAA  Raphanus raphanistrum subsp. landra
EX772106       <-- ...GACTGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTATGTAAAA  Raphanus raphanistrum subsp. landra
FD970253       <-- ...GACTGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTGTGTAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972316       <-- ...GACTGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTGTGTAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770003       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY908206       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758455       --> GATGACTGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTGTGTAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX774621       --> ...GACTGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTATGTAAAA  Raphanus raphanistrum subsp. landra
EX776138       --> ...GACTGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTATGTAAAA  Raphanus raphanistrum subsp. landra
FD966660       --> ...GACTGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTGTGTAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968221       --> ...GACTGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTGTGTAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776394       --> ......aGAAACCAAGATCAAAAAGACCGCAGCTTACTAATTGTGTAAAA  Raphanus raphanistrum subsp. landra

               51     -    101
UN08277        --> ATCCCAGGAATGTCTTAAGAGAAAAATCCGAGTACAAACTAAACAGTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX754047       <-- ATCCCAGGAATGTCTTAAGAGAAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770431       <-- ATCCCAGCAATGTCTTA-GAGAAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. landra
EX772106       <-- ATCCCAGCAATGTCTTA-GAGAAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. landra
FD970253       <-- ATCCCAGGAATGTCTTAAGAGAAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972316       <-- ATCCCAGGAATGTCTTAAGAGAAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770003       <-- ...................gagAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. landra
EY908206       <-- .................................ACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758455       --> ATCCCAGGAATGTCTTAAGAGAAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX774621       --> ATCCCAGCAATGTCTTA-GAGAAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. landra
EX776138       --> ATCCCAGCAATGTCTTAA-AGAAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. landra
FD966660       --> ATCCCAGGAATGTCTTAAGAGAAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968221       --> ATCCCAGGAATGTCTTAAGAGAAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776394       --> ATCCCAGCAACGTCTTA-GAGAAAAATCCGAGTACAAACTAAACAGTAAC  Raphanus raphanistrum subsp. landra

               101    -    151
UN08277        --> ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX754047       <-- ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
EX770431       <-- ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
EX772106       <-- ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
FD970253       <-- ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
FD972316       <-- ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
EX770003       <-- ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
EY908206       <-- ATCATATAGATTTCAAAACGAAAAAAA-GATGGCATTAAAAAACGGTTCT
EX758455       --> ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
EX774621       --> ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
EX776138       --> ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
FD966660       --> ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
FD968221       --> ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAACGGTTCT
EX776394       --> ATCATATAGATTTCAAAACGAAAAAAAAGATGGCATTAAAAAAAGGTTCT

               151    -    201
UN08277        --> CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX754047       <-- CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
EX770431       <-- CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
EX772106       <-- CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
FD970253       <-- CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
FD972316       <-- CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
EX770003       <-- CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
EY908206       <-- CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
EX758455       --> CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
EX774621       --> CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
EX776138       --> CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
FD966660       --> CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
FD968221       --> CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT
EX776394       --> CTACTCAAACAGACTGAAACCCATGTCATCATCGGATTCTTCCTTCTCTT

               201    -    251
UN08277        --> CTTTCTTCTCTTCTTTCTTGGCCTCAGCAGCAGGAGCAGCACCGCCGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX754047       <-- CTTTCTTCTCTTCTTTCTTGGCCTCAGCAGCAGGAGCAGCACCGCCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770431       <-- CTTTCTTCTCTTCTTTCTTGGCCTCAGCCGCAGGAGCAGCACCACCGCCA  Raphanus raphanistrum subsp. landra
EX772106       <-- CTTTCTTCTCTTCTTTCTTGGCCTCAGCCGCAGGAGCAGCACCACCGCCA  Raphanus raphanistrum subsp. landra
FD970253       <-- CTTTCTTCTCTTCTTTCTTGGCCTCAGCAGCAGGAGCAGCACCGCCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972316       <-- CTTTCTTCTCTTCTTTCTTGGCCTCAGCAGCAGGAGCAGCACCGCCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770003       <-- CTTTCTTCTCTTCTTTCTTGGCCTCAGCCGCAGGAGCAGCACCACCGCCA  Raphanus raphanistrum subsp. landra
EY908206       <-- CTTTCTTCTCTTCTTTCTTGGCCTCAGCAGCAGGAGCAGCACCGCCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758455       --> CTTTCTTCTCTTCTTTCTTGGCCTCAGCAGCAGGAGCAGCACCGCCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX774621       --> CTTTCTTCTCTTCTTTCTTGGCCTCAGCCGCAGGAGCAGCACCACCGCCA  Raphanus raphanistrum subsp. landra
EX776138       --> CTTTCTTCTCTTCTTTCTTGGCCTCAGCCGCAGGAGCAGCACCACCGCCA  Raphanus raphanistrum subsp. landra
FD966660       --> CTTTCTTCTCTTCTTTCTTGGCCTCAGCAGCAGGAGCAGCACCGCCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968221       --> CTTTCTTCTCTTCTTTCTTGGCCTCAGCAGCAGGAGCAGCACCGCCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776394       --> CTTTCTTCTCTTCTTTCTTGGCCTCAGCCGCAGGAGCAGCACCACCGCCA  Raphanus raphanistrum subsp. landra

               251    -    301
UN08277        --> CCACCAGCAGAAGGAGCAGAAGCCATGGCAACACCACCACCACTTGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX754047       <-- CCACCAGCAGAAGGAGCAGAAGCCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770431       <-- CCAGCAGCAGAAGGAGTAGAAGTCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. landra
EX772106       <-- CCAGCAGCAGAAGGAGTAGAAGTCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. landra
FD970253       <-- CCACCAGCAGAAGGAGCAGAAGCCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972316       <-- CCACCAGCAGAAGGAGCAGAAGCCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770003       <-- CCAGCAGCAGAAGGAGTAGAAGTCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. landra
EY908206       <-- CCACCAGCAGAAGGAGCAGAAGCCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758455       --> CCACCAGCAGAAGGAGCAGAAGCCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX774621       --> CCAGCAGCAGAAGGAGTAGAAGTCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. landra
EX776138       --> CCAGCAGCAGAAGGAGTAGAAGTCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. landra
FD966660       --> CCACCAGCAGAAGGAGCAGAAGCCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968221       --> CCACCAGCAGAAGGAGCAGAAGCCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776394       --> CCAGCAGCAGAAGGAGTAGAAGTCATGGCAACACCACCACCACTTGGAAC  Raphanus raphanistrum subsp. landra

               301    -    351
UN08277        --> AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX754047       <-- AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770431       <-- AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTCC  Raphanus raphanistrum subsp. landra
EX772106       <-- AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTCC  Raphanus raphanistrum subsp. landra
FD970253       <-- AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972316       <-- AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770003       <-- AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTCC  Raphanus raphanistrum subsp. landra
EY908206       <-- AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758455       --> AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX774621       --> AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTCC  Raphanus raphanistrum subsp. landra
EX776138       --> AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTCC  Raphanus raphanistrum subsp. landra
FD966660       --> AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968221       --> AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776394       --> AGAAGCCAACTTCTCCCTTCCAGCAGCAATGAGCTCAGCACAGTCTTTCC  Raphanus raphanistrum subsp. landra

               351    -    401
UN08277        --> CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX754047       <-- CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
EX770431       <-- CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
EX772106       <-- CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
FD970253       <-- CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
FD972316       <-- CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
EX770003       <-- CACTGACTCCCTTCAACAAAAGCTCAATCTGAGCATCTT...........
EY908206       <-- CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
EX758455       --> CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
EX774621       --> CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
EX776138       --> CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
FD966660       --> CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
FD968221       --> CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA
EX776394       --> CACTGACTTCCTTCAACAAAAGCTCAATCTGAGCATCTTCACCTTCAGCA

               401    -    451
UN08277        --> CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX754047       <-- CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
EX770431       <-- CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
EX772106       <-- CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
FD970253       <-- CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
FD972316       <-- CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
EX770003       <-- ..................................................
EY908206       <-- CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
EX758455       --> CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
EX774621       --> CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
EX776138       --> CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
FD966660       --> CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
FD968221       --> CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT
EX776394       --> CCAACTGATCCGAGGATATTCTTAATATCGGCACTGTTTGGGGAAGCTTT

               451    -    501
UN08277        --> TCCGCTCAAAACGGCCAGTAAGAAAGCGGCGACAACCTTCATTTTTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX754047       <-- TCCGCTCAAAACG-CCAGTAAGAAAGCGGCGACAACCTTCATTTTTTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770431       <-- TCCGCTCAAAACGGCCAGTAAGAAAGCAGCAACAACCTTCATTTTTTT-G  Raphanus raphanistrum subsp. landra
EX772106       <-- TCCGCTCAAAACGGCCAGTAAGAAAGCAGCAACAACCTTCATTTTTTT-G  Raphanus raphanistrum subsp. landra
FD970253       <-- TCCGCTCAAAACGGCCAGTAAGAAAGCGGCGACAACCTTCATTTTTTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972316       <-- TCCGCTCAAAACGGCCAGTAAGAAAGCGGCGACAACCTTCATTTTTTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770003       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY908206       <-- TCCGCTCAAAACGGCCAGTAAGAAAGCGGCGACAACCTTCATTTTTTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758455       --> TCCGCTCAAAACG-CCAGTAAGAAAGCGGCGACAACCTTCATTTTTTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX774621       --> TCCGCTCAAAACGGCCAGTAAGAAAGCAGCAACAACCTTCATTTTTTT-G  Raphanus raphanistrum subsp. landra
EX776138       --> TCCGCTCAAAACGGCCAGTAAGAAAGCAGCAACAACCTTCATTTTTTT-G  Raphanus raphanistrum subsp. landra
FD966660       --> TCCGCTCAAAACGGCCAGTAAGAAAGCGGCGACAACCTTCATTTTTTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968221       --> TCCGCTCAAAACGGCCAGTAAGAAAGCGGCGACAACCTTCATTTTTTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776394       --> TCCGCTCAAAACGGCCAGTAAGAAAGCAGCAACAACCTTCATTTTTTT-G  Raphanus raphanistrum subsp. landra

               501    -    551
UN08277        --> CAGAAGTTGATGGGAAGCGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX754047       <-- CAGAAGTTGATGGGAAGCGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
EX770431       <-- CAGAAGTTGATGGGAAGCGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
EX772106       <-- CAGAAGTTGATGGGAAGCGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
FD970253       <-- CAGAAGTTGATGGGAAGTGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
FD972316       <-- CAGAAGTTGATGGGAAGTGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
EX770003       <-- ..................................................
EY908206       <-- CAGAAGTTGATGGGAAGCGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
EX758455       --> CAGAAGTTGATGGGAAGCGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
EX774621       --> CAGAAGTTGATGGGAAGCGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
EX776138       --> CAGAAGTTGATGGGAAGCGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
FD966660       --> CAGAAGTTGATGGGAAGTGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
FD968221       --> CAGAAGTTGATGGGAAGTGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC
EX776394       --> CAGAAGTTGATGGGAAGCGGAAAGCTAAAGAGTTAGTTTTCGAAGACGAC

               551    -    601
UN08277        --> GGCAATCC
                   ~~~~~~~~
EX754047       <-- GGCAATC.
EX770431       <-- GGCAATCC
EX772106       <-- GGCAATCC
FD970253       <-- GGCAATC.
FD972316       <-- GGCAATC.
EX770003       <-- ........
EY908206       <-- GGCAATCC
EX758455       --> GGCAATC.
EX774621       --> GGCAATCC
EX776138       --> GGCAATCC
FD966660       --> GGCAATC.
FD968221       --> GG......
EX776394       --> GGCcc...