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Alignment for radish unigene UN08309

               1      -     51
UN08309        --> CAAAAGGATAAAAAGTATATTTAATGTATAAAATTACATTAAAATTGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- ..................................................
FD961837       <-- ..................................................
EX757012       <-- ..................................................
EX748355       <-- ..................................................
FD557565       <-- ..................................................
FD972395       <-- ..................................................
FD961926       <-- ..................................................
FD552050       <-- ..................................................
FD562097       <-- ..................................................
EV565922       <-- ..................................................
FD958526       --> CAAAAGGATAAAAAGTATATTTAATGTATAAAATTACATTAAAATTGTAG
EX752307       --> .....GGATAAAAAGTATATTTAATGTATAAAATTACATTAAAATTGTAG
EX760694       --> ..............................................aTAG
FD958584       --> ..................................................
FD961492       --> ..................................................
EV571161       --> ..................................................

               51     -    101
UN08309        --> AATGACATTTAATTTGAAACAAAATAAAAAAAACTAAAATGACAATTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- ...................acAAATAAAAAAA-CTAAAATGACAATTATT
FD961837       <-- .........................AAAAAAAACTAAAATGACAATTATT
EX757012       <-- .....................................AATGACAATTATT
EX748355       <-- ..................................................
FD557565       <-- ..................................................
FD972395       <-- ..................................................
FD961926       <-- ..................................................
FD552050       <-- ..................................................
FD562097       <-- ..................................................
EV565922       <-- ..................................................
FD958526       --> AATGACATTTAATTTGAAACAAAATAAAAAAAACTAAAATGACAATTATT
EX752307       --> AATGACATTTAATTTGAAACAAAATAAAAAAAACTAAAATGACAATTATT
EX760694       --> AATGACATTTAATTTGAAACAAAATAAAAAACCCTAAAATGACAATTATT
FD958584       --> ...GACATTTAATTTGAAACAAAATAAAAAAAACTAAAATGACAATTATT
FD961492       --> ...GACATTTAATTTGAAACAAAATAAAAAAAACTAAAATGACAATTATT
EV571161       --> ..................................................

               101    -    151
UN08309        --> ATGAAA-ATAATAAGTAATTTAAA-ACACCATCTAAAATGTAGCAAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- ATGAAA-ATAATAAGTAATTTAAA-ACACCATCTAAAATGTAGCAAAAGG
FD961837       <-- ATGAAA-ATAATAAGTAATTTAAA-ACACCATCTAAAATGTAGCAAAAGG
EX757012       <-- ATGAAACATAATAAGTAATTTAAACACACCATCTAAAATGTAGCAAAAGG
EX748355       <-- ..........ATAAGTAATTTAAA-ACACCATCTAAAATGTAGCAAAAGG
FD557565       <-- ....................................AATGTAGCAAAAGA
FD972395       <-- ....................................AATGTAGCAAA-GG
FD961926       <-- ......................................TGTAGCAAAAGG
FD552050       <-- ................................................ga
FD562097       <-- ..................................................
EV565922       <-- ..................................................
FD958526       --> ATGAAA-ATAATAAGTAATTTAAA-ACACCATCTAAAATGTAGCAAAAGG
EX752307       --> ATGAAA-ATAATAAGTAATTTAAA-ACACCATCTAAAATGTAGCAAAAGG
EX760694       --> ATGAAACATAATAAGTAATTTAAACACACCATCTAAAATGTAGCAAAAGG
FD958584       --> ATGAAA-ATAATAAGTAATTTAAA-ACACCATCTAAAATGTAGCAAAAGG
FD961492       --> ATGAAA-ATAATAAGTAATTTAAA-ACACCATCTAAAATGTAGCAAAAGG
EV571161       --> ..................................................

               151    -    201
UN08309        --> AATATCAAGAATCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- AATATCAAGAATCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
FD961837       <-- AATATCAAGAATCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
EX757012       <-- AATATCAAGAGTCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
EX748355       <-- AATATCAAGAATCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
FD557565       <-- AATATCAAGAATCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
FD972395       <-- AATATCAAGAGTCATTCACAAGAAA-TTGTGTTTACTCTCCAGAATCTTC
FD961926       <-- AATATCAAGAATCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
FD552050       <-- AATATCAAGAATCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
FD562097       <-- .................ACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
EV565922       <-- ..................................................
FD958526       --> AATATCAAGAATCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
EX752307       --> AATATCAAGAATCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
EX760694       --> AATATCAAGAGTCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
FD958584       --> AATATCAAGAATCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
FD961492       --> AATATCAAGAATCATTCACAAGAAAATTGTGTTTACTCTCCAGAATCTTC
EV571161       --> ..................................................

               201    -    251
UN08309        --> TCGGTTAATGTCATCGAGAATTACAATGAGAGAAACTATAAACGCATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- TCGGTTAATGTCATCGAGAATTACAATGAGAGAAACTATAAACGCATAAT  Raphanus raphanistrum subsp. maritimus
FD961837       <-- TCGGTTAATGTCATCGAGAATTACAATGAGAGAAACTATAAACGCATAAT  Raphanus raphanistrum subsp. maritimus
EX757012       <-- TCGGTTAATGTCATCGAGAATGACAATGAGAGAGACTATAAATGCATAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748355       <-- TCGGTTAATGTCATCGAGAATTACAATGAGAGAAACTATAAACGCATAAT  Raphanus raphanistrum subsp. maritimus
FD557565       <-- TCGGTTAATGTCATCGAGAATTACAATGAGAGAGACTATAAACGCATAAT  Raphanus raphanistrum subsp. landra
FD972395       <-- TCGGTTA-TGTCATCGAGAATGACAATGAGAGAGACTATAAATGCATAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961926       <-- TCGGTTAATGTCATCGAGAATTACAATGAGAGAAACTATAAACGCATAAT  Raphanus raphanistrum subsp. maritimus
FD552050       <-- TCGGTTA-TGTCATCGAGAATTACAATGAGAGAGACTATAAACGCATAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562097       <-- TCGGTTAATGTCATCGAGAATTACAATGAGAGAGACTATAAACGCATAAT  Raphanus sativus var. oleiformis
EV565922       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD958526       --> TCGGTTAATGTCATCGAGAATTACAATGAGAGAAACTATAAACGCATAAT  Raphanus raphanistrum subsp. maritimus
EX752307       --> TCGGTTAATGTCATCGAGAATTACAATGAGAGAAACTATAAACGCATAAT  Raphanus raphanistrum subsp. maritimus
EX760694       --> TCGGTTAATGTCATCGAGAATGACAATGAGAGAGACTATAAATGCATAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958584       --> TCGGTTAATGTCATCGAGAATTACAATGAGAGAAACTATAAACGCATAAT  Raphanus raphanistrum subsp. maritimus
FD961492       --> TCGGTTAATGTCATCGAGAATTACAATGAGAGAAACTATAAACGCATAAT  Raphanus raphanistrum subsp. maritimus
EV571161       --> .............TCGAGAATTACAATGAGAGAGACTATAAACGCATAAT  Raphanus raphanistrum subsp. landra

               251    -    301
UN08309        --> CAACATTCGGATAAACCGTAACTGAGAAATTACTCTTCCCTATCAATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- CAACATTCGGATAAACCGTAACTGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. maritimus
FD961837       <-- CAACATTCGGATAAACCGTAACTGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. maritimus
EX757012       <-- CAACATTCGGATAAACCGTAACCGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748355       <-- CAACATTCGGATAAACCGTAACTGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. maritimus
FD557565       <-- CAACATTCGGATAAACTGTAACCGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. landra
FD972395       <-- CAACATTCGGATAAACCGTAACCGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961926       <-- CAACATTCGGATAAACCGTAACTGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. maritimus
FD552050       <-- CAACATTCGGATAAACTGTAACCGAGAAACTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562097       <-- CAACATTCGGACAAACTGTAACCGAGAAATTACTCTTCCCTATCAATATG  Raphanus sativus var. oleiformis
EV565922       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD958526       --> CAACATTCGGATAAACCGTAACTGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. maritimus
EX752307       --> CAACATTCGGATAAACCGTAACTGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. maritimus
EX760694       --> CAACATTCGGATAAACCGTAACCGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958584       --> CAACATTCGGATAAACCGTAACTGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. maritimus
FD961492       --> CAACATTCGGATAAACCGTAACTGAGAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. maritimus
EV571161       --> CAACATTCGGATAAACTGTAACCGAAAAATTACTCTTCCCTATCAATATG  Raphanus raphanistrum subsp. landra

               301    -    351
UN08309        --> CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
FD961837       <-- CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
EX757012       <-- CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
EX748355       <-- CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
FD557565       <-- CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
FD972395       <-- CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
FD961926       <-- CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
FD552050       <-- CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
FD562097       <-- CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
EV565922       <-- .....................TGCATCTGTGCAACAATGACGTCAGATTT
FD958526       --> CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
EX752307       --> CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
EX760694       --> CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
FD958584       --> CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
FD961492       --> CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT
EV571161       --> CTCTGCGCGGTATGTTTCTTGTGCATCTGTGCAACAATGACGTCAGATTT

               351    -    401
UN08309        --> TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
FD961837       <-- TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
EX757012       <-- TCCAGCATAGATGGTAGATGACCGGTCGATCCAACTTCCTTTGACATGGA
EX748355       <-- TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
FD557565       <-- TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
FD972395       <-- TCCAGCATAGATGGTAGATGACCGGTCGATCCAACTTCCTTTGACATGGA
FD961926       <-- TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
FD552050       <-- TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
FD562097       <-- TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
EV565922       <-- TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
FD958526       --> TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
EX752307       --> TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
EX760694       --> TCCAGCATAGATGGTAGATGACCGGTCGATCCAACTTCCTTTGACATGGA
FD958584       --> TCCAGCATAAATG.....................................
FD961492       --> TCCAGCATAGATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA
EV571161       --> TCCAGCCTACATGGTAGAGGACCGGTCGATCCAACTTCCTTTGACATGGA

               401    -    451
UN08309        --> AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
FD961837       <-- AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
EX757012       <-- AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAACTTT
EX748355       <-- AGTCGCATTACTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
FD557565       <-- AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
FD972395       <-- AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAACTTT
FD961926       <-- AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
FD552050       <-- AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
FD562097       <-- AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
EV565922       <-- AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
FD958526       --> AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
EX752307       --> AGTCGCATTACTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
EX760694       --> AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAACTTT
FD958584       --> ..................................................
FD961492       --> AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT
EV571161       --> AGTCGCATTCCTTCATTTCCTTATTAGGAGCCAAGAAAACATCTAGCTTT

               451    -    501
UN08309        --> GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
FD961837       <-- GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
EX757012       <-- GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
EX748355       <-- GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
FD557565       <-- GGCTTAATCGGCTGAAACATCGATGATCGTTTCAATGTGTATACCAAATC
FD972395       <-- GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
FD961926       <-- GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
FD552050       <-- GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
FD562097       <-- GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
EV565922       <-- GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
FD958526       --> GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
EX752307       --> GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
EX760694       --> GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
FD958584       --> ..................................................
FD961492       --> GGCTTAATCAGCTGAAACATCGACGATCGTTTCAATGTGTATACCAAATC
EV571161       --> GGCTTAATCAGCTGAAACATCGATGATCGTTTCAATGTGTATACCAAATC

               501    -    551
UN08309        --> ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCACCTATCGTGAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCACCTATCGTGAAGAC
FD961837       <-- ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCACCTATCGTGAAGAC
EX757012       <-- ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCATCTATCGTGAAGAC
EX748355       <-- ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCACCTATCGTGAAGAC
FD557565       <-- ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCACCTATCGTGAAGAC
FD972395       <-- ATTTTGGTCTGTAATCTTTCCTCTAAACACTTGCCATCTATCGTGAAGAC
FD961926       <-- ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCACCTATCGTGAAGAC
FD552050       <-- ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCACCTATCGTGAAGAT
FD562097       <-- ATTTTGGTCTGTACTCTTTCCTCTAAACACCTGCCACCTATCGTGAAGAC
EV565922       <-- ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCA..............
FD958526       --> ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCACCTATCGTGAAGAC
EX752307       --> ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCACCTATCGTGAAGAC
EX760694       --> ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCATCTATCGTGAAGAC
FD958584       --> ..................................................
FD961492       --> ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCACCTATCGTGAAGAC
EV571161       --> ATTTTGGTCTGTACTCTTTCCTCTAAACACTTGCCACCTATCGTGAAGAC

               551    -    601
UN08309        --> TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGTCGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGTCGAGT
FD961837       <-- TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGCCGAGT
EX757012       <-- TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGTCGAGT
EX748355       <-- TCACCTTATTTTCTTTCAGAGTCAAAATTGGAGTGTCTGATGCGTCGAGT
FD557565       <-- TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGTCGAGT
FD972395       <-- TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGTCGAGT
FD961926       <-- TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGCCGAGT
FD552050       <-- TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGTCGAGT
FD562097       <-- TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGTCGAGT
EV565922       <-- ..................................................
FD958526       --> TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGCCGAGT
EX752307       --> TCACCTTATTTTCTTTCAGAGTCAAAATTGGAGTGTCTGATGCGTCGAGT
EX760694       --> TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGTCGAGT
FD958584       --> ..................................................
FD961492       --> TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGTCGAGT
EV571161       --> TCACCTTATTTTCTTTCAAAGTCAAAATTGGAGTGTCTGATGCGTCCAGT

               601    -    651
UN08309        --> AAGATCCTTTTGTCGGAGAGACTAAACATTGGTTCTTTGACTTTGAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- AAGATCCTTTTGTCGGAGAGACTAAACATTGGTTCTTTGACTTTGAAAAG  Raphanus raphanistrum subsp. maritimus
FD961837       <-- AAGATCCTTTTGTCGGAGAGACTAAACATTGGTTCTTTGACTTTGAAAAG  Raphanus raphanistrum subsp. maritimus
EX757012       <-- AAGATCCTTTTGTCAGAGAGGCTAAACATTAGTTCTTTGACTTTGAAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748355       <-- AAGATCCTTTTGTCGGAGAGACTAAACATTGGTTCTTTGACTTTGAAAAG  Raphanus raphanistrum subsp. maritimus
FD557565       <-- AAGATCCTTTTGTCGGAGAGGCTAAACATTGGTTCTTTGACTTTGAAAAG  Raphanus raphanistrum subsp. landra
FD972395       <-- AAGATCCTTTTGTCAGAGAGGCTAAACATTGGTTCTTTGACTTTGAAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961926       <-- AAGATCCTTTTGTCGGAGAGACTAAACATTGGTTCTTTGACTTTGAAAAG  Raphanus raphanistrum subsp. maritimus
FD552050       <-- AAGATCCTTTTGTCGGAGAGGCTAAACATTGGTTCTTTGGCTTTGAAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562097       <-- AAGATCCTTTTGTCGGAGAGGCTAAACATTGGTTCTTTGACTTTGAAAAG  Raphanus sativus var. oleiformis
EV565922       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD958526       --> AAGATCCTTTTGTCGGAGAGACTAAACATTGGTTCTTTGACTTTGAAAAG  Raphanus raphanistrum subsp. maritimus
EX752307       --> AAGATCCTTTTGTCGGAGAGACTAAACATTGGTTCTTTGACTTTGAAAAG  Raphanus raphanistrum subsp. maritimus
EX760694       --> AAGATCCTTTTG......................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958584       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD961492       --> AAGATCCTTTTGTCGGAGAGACTAAACATTGGTTCTTTGACTTTGAAAAG  Raphanus raphanistrum subsp. maritimus
EV571161       --> AAGATCCTTTTGTCGGAGAGGCTAAACATTGGTTCTTTGACTTTGAAAAG  Raphanus raphanistrum subsp. landra

               651    -    701
UN08309        --> GAGATTGCCGTTGACGTCTGTGACAGCGAAGTTACCATCTGTGATTGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- GAGATTGCCGTTGACGTCTGTGACAGCGAAGTTACCATCTGTGATTGTCA  Raphanus raphanistrum subsp. maritimus
FD961837       <-- GAGATTGCCGTTGACGGCTGTGACAGCGAAGTTACCATCTGTGATTGTCA  Raphanus raphanistrum subsp. maritimus
EX757012       <-- GAGATTGCCGTTGACGTCTGTGACAGCGAAGTTACCATCTGTTATCGTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748355       <-- GAGATTGCCGTTGACGTCTGTGACAGCGAAGTTACCATCTGTGATTGTCA  Raphanus raphanistrum subsp. maritimus
FD557565       <-- GAGATTGCCGTTGACGTCTGTGACAGCGAAGTTACCATCTGTGATCGTCA  Raphanus raphanistrum subsp. landra
FD972395       <-- GAGATTGCCGTTGACGTCTGTGACAGCGAAGTTACCATCTGTTATCGTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961926       <-- GAGATTGCCGTTGACGGCTGTGACAGCGAAGTTACCATCTGTGATTGTCA  Raphanus raphanistrum subsp. maritimus
FD552050       <-- GAGATTGCCGTTGACGTCTGTGACAGCGAAGTTACCATCTGTGATCGTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562097       <-- GAGATTACCGTTGACGTCTGTGACAGCGAAGTTACCATCTGTGATCGTCA  Raphanus sativus var. oleiformis
EV565922       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD958526       --> GAGATTGCCGTTGACGGCTGTGACAGCGAAGTTACCATCTGTGATTGTCA  Raphanus raphanistrum subsp. maritimus
EX752307       --> GAGATTGCCGTTGACGTCTGTGACAGCGAAGTTACCATCTGTGATT....  Raphanus raphanistrum subsp. maritimus
EX760694       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958584       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD961492       --> GAGATTGCCGTTGACGTCTGTGACAGCGAAGTTACCATCTGTGATTGTCA  Raphanus raphanistrum subsp. maritimus
EV571161       --> GAGATTGCCGTTGACGTCTGTGACAGCGAAGTTACCATCTGTGATCGTCA  Raphanus raphanistrum subsp. landra

               701    -    751
UN08309        --> TCACCTTTCGTACGATTCCCAATTCTACCGGGTACGGTGCACAAAAGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- TCACCTTTCGTACGATTCCCAATTCTACCGGGTACGGTGCACAAAAGTTA
FD961837       <-- TCACCTTTCGTACGATTCCCAATTCTACCGGGTACGGTGCACAAAAGTTA
EX757012       <-- TCACCTTTCGTACGATTCCCAATTCTACCGGGTACGGTGCACAAAAGTTA
EX748355       <-- TCACCTTTCGTACGATTCCCAATTCTACCGGGTACGGTGCACAAAAGTTA
FD557565       <-- TCACCTTTCGTACGATTCCCAATTCTACCGGGTACGGTGCACAAAAGTTA
FD972395       <-- TCACCTTTCGTACGATTCCCAATTCTACCGGGTACGGTGCACAAAAGTT.
FD961926       <-- TCACCTTTCGTACGATTCCCAATTCTACCGGGTACGGTGCACAAAAGTTA
FD552050       <-- TCACCTTTCGTACGATTCCCAATTCTACCGGGTACGGTGCACAAAAGTTA
FD562097       <-- TCACCTTTCGTACGATTCCCAATTCTACCGGGTACGGTGCACAAAAGTTA
EV565922       <-- ..................................................
FD958526       --> TCACCTTTCGTACGATTCCCAATTCTACCGGGTACG-TGCACAAAAGTTA
EX752307       --> ..................................................
EX760694       --> ..................................................
FD958584       --> ..................................................
FD961492       --> TCACCTTTCGTACGATTCCCAATTCTACCGGG..................
EV571161       --> TCACCTTTCGTACGATTCCC..............................

               751    -    801
UN08309        --> GGGTTCACGATCGCCATATTGAAACTCTCTCTTTTTCTTCTTCTTTCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- GGGTTCACGATCGCCATATTGAAACTCTCTCTTTTTCTTCTTCTTTCTGA
FD961837       <-- GGGTTCACGATCGCCATATTGAAACTCTCTCTTTTTCTTCTTCTTTCTGA
EX757012       <-- GGATTCACGATCGCCATATTGAAACTCTCTCTTTTTCTTCTTCTTTCTGA
EX748355       <-- GGGTTCACGATCGCCATATTGAAACTCTCTCTTTTTCTTCTTCTTTCTGA
FD557565       <-- GGGTTCACGATCGCCATATTGAAACTCTCTCTTTT-CTTCTTCTTTCTGA
FD972395       <-- ..................................................
FD961926       <-- GGGTTCACGATCGCCATATTGAAACTCTCTCTTTTTCTTCTTCTTTCTGA
FD552050       <-- GGGTTCACGATCGCCATATTGAAACTCTCTCTTTTTCTTCTTCTTTCTGA
FD562097       <-- GGGTTCACGATCGCCATATTGAAACTCTCTCTTTTTCTTCTTCTTTCTGA
EV565922       <-- ..................................................
FD958526       --> GGGTTCACGATCGCCATATTGAAACTCTCTCTTTTTCTTCTTCTTTC...
EX752307       --> ..................................................
EX760694       --> ..................................................
FD958584       --> ..................................................
FD961492       --> ..................................................
EV571161       --> ..................................................

               801    -    851
UN08309        --> TTGTTGTATAAGATGATTAAGAATGAGATTGTGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD965877       <-- TTGTTGTATAAGATGATTAAGAATGAGATTGCGTCC
FD961837       <-- TTGTTGTATAAGATGATTAAGAATGAGATTGTGTC.
EX757012       <-- TTCTTGTATAAGATGATTAAGAATGAGATT......
EX748355       <-- TTGTTGTATAAGATGATTAAGAATcc..........
FD557565       <-- TTCTTGTATAAGATGATTAAGAATGAGATTGTGTCC
FD972395       <-- ....................................
FD961926       <-- TTGTTGTATAAGATGATTAAGAATGAGATTGTGTC.
FD552050       <-- TTGTTGTATAAGATGATTAAGAATGAGATTcc....
FD562097       <-- TTGTTGTATAAGATGATTAAGAATcc..........
EV565922       <-- ....................................
FD958526       --> ....................................
EX752307       --> ....................................
EX760694       --> ....................................
FD958584       --> ....................................
FD961492       --> ....................................
EV571161       --> ....................................