1      -     51
UN08354        --> TTTTTTTTGTTTGAAAGGCCTTCTTTCTTCTTAAGAAGGACAGCTATAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- TTTTTTTTGTTTGAAAGGC-TTCTTTCTT-TTAAGAAGGACAGCTATAGA
EW715512       <-- ..................................................
EY917155       <-- ..................................................
FD981095       <-- ..................................................
FD567796       --> ............GAAAGGCCTTCTTTCTTCTTAAGAAGGACAGCTATAGA
FD976872       --> ..................................................

               51     -    101
UN08354        --> GAGAGATCCAAACACCATGGAACCATATTTCATAGGAAGACAAGTCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- GAGAGATCCAAACACCAAGGAACCATATTTCAAAGGAAGACAAGTCTGCT  Raphanus sativus var. oleiformis
EW715512       <-- ......TCCAAACACCAAGGAACCATATTTCAAAGGAAGACAAGTCTGCT  Raphanus sativus var. oleiformis
EY917155       <-- ........CAAACACCATGCAACCATATATCATAGGAAGACAAGTCTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981095       <-- ....ggttCAAACACCATGCAACCATATATCATAGGAAGACAAGTCTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567796       --> GAGAGATCCAAACACCAAGGAACCATATTTCAAAGGAAGACAAGTCTGCT  Raphanus sativus var. oleiformis
FD976872       --> ....ggttCAAACACCATGCAACCATATATCATAGGAAGACAAGTCTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN08354        --> TCCATCAACAAAGAGTATTTGATCTAAACTCATTTCATAAACTGTTCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- TCCATCAACAAAGAGTAGTTGATCTAAACTCATTTCATAAACTGTTCTAG  Raphanus sativus var. oleiformis
EW715512       <-- TCCATCAACAAAGAGTAGTTGATCTAAACTCATTTCATAAACTGTTCTAG  Raphanus sativus var. oleiformis
EY917155       <-- TCCATCAACAAAGAGTATTTGATCTAAACTCATTTCATAAACTGTTCTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981095       <-- TCCATCAACAAAGAGTATTTGATCTAAACTCATTTCATAAACTGTTCTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567796       --> TCCATCAACAAAGAGTAGTTGATCTAAACTCATTTCATAAACTGTTCTAG  Raphanus sativus var. oleiformis
FD976872       --> TCCATCAACAAAGAGTATTTGATCTAAACTCATTTCATAAACTGTTCTAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN08354        --> CTACAGAGAAAACAAAGCTTATCATTCTTCATTCATGCATTGTCCTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- CTACAGAGAAAACAAAGCTTATCATTCTTCATTCATGCATTGTCCTTTGA
EW715512       <-- CTACAGAGAAAACAAAGCTTATCATTCTTCATTCATGCATTGTCCTCTGA
EY917155       <-- CTACAGAGAAAACAAAGCTTATCATTCTTCATTCATGCATTGTCCTTTGA
FD981095       <-- CTACAGAGAAAACAAAGCTTATCATTCTTCATTCATGCATTGTCCTTTGA
FD567796       --> CTACAAAGAAAACAAAGCTTATCATTCTTCATTCATGCATTGTCCTTTGA
FD976872       --> CTACAGAGAAAACAAAGCTTATCATTCTTCATTCATGCATTGTCCTTTGA

               201    -    251
UN08354        --> GCTTGACGAAACCTCAGTTTTTTTC-TCTTCCTTGTTGCTCATTGCTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- GCTTGACGAAACCTCAGTTTTTTTC-TCTTCCTTGTTGCTCATTGCTACT
EW715512       <-- GCTTGACGAAACCTCAGTTTTTTCC-TCTTCCTTGTTGCTCATTGCTACT
EY917155       <-- GCTTGACGAAACCTCAGTTTTTTCC-TCTTCCTTGTTGCTCATTGCTACT
FD981095       <-- GCTTGACGAAACCTCAGTTTTTTTCCTCTTCCTTGTTGCTCATTGCTACT
FD567796       --> GCTTGACGAAACCTCAGTTTTTTTC-TCTTCCTTGTTGCTCATTGCTACT
FD976872       --> GCTTGACGAAACCTCAGTTTTTTTCCTCTTCCTTGTTGCTCATTGCTACT

               251    -    301
UN08354        --> GGAGACGACGAGCCAGCTACAGAATCTTCAGGTTCCGTCTTAAGCTCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- GGAGACGACGAGCCAGCAACAGAATCTTCAGGTTCCGTCTTAAGCTCAGA
EW715512       <-- GGAGAAGACGAGCCAGCAACAGAATCTTCAGGTCCCGTCTTAAGCTCAGA
EY917155       <-- GGAGACGACGAGCCAGCTACAGAATCTTCAGGTTCCGTCTTAAGCTCAGA
FD981095       <-- GGAGACGACGAGCCAGCTACAGAATCTTCAGGTTCCGTCTTAAGCTCAGA
FD567796       --> GGA...............................................
FD976872       --> GGAGACGACGAGCCAGCTACAGAATCTTCAGGTTCCGTCTTAAGCTCAGA

               301    -    351
UN08354        --> CTCAAACTCTTTTGCAGCCTGTTGAAAGCTTTTGACGGTCTTGCCGATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- CTCAAACTCTTTTGCAGCCTGTTGAAAGCTTTTGACGGTCTTGCCAATAC
EW715512       <-- CTCAAACTCTTTTGCAGCCTGTTGAAAGCTTTTGACGGTCTTGCCAATAC
EY917155       <-- CTCAAACTCTTTTGCAGCCTGTTGAAAGCTTTTGACGGTCTTGCCGATAC
FD981095       <-- CTCAAACTCTTTTGCAGCCTGTTGAAAGCTTTTGACGGTCTTGCCGATAC
FD567796       --> ..................................................
FD976872       --> CTCAAACTCTTTTGCAGCCTGTTGAAAGCTTTTGACGGTCTTGCCGATAC

               351    -    401
UN08354        --> TCTTGCCAATCTCAGGAAGCTTCTTAGGTCCGAAAAGCAACGCGGCGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- TCTTGCCAATCTCAGGAAGCTTCTTAGGTCCGAAAAGCAACGCGGCGACG
EW715512       <-- TCTTGCCAATCTCAGGAAGCTTCTTAGGTCCGAAAAGCAACGCGGCGACG
EY917155       <-- TCTTGCCAATCTCAGGAAGCTTCTTAGGTCCGAAAAGCAACGCGGCGACG
FD981095       <-- TCTTGCCAATCTCAGGAAGCTTCTTAGGCCCGAAAAGCAACGCGGCGACG
FD567796       --> ..................................................
FD976872       --> TCTTGCCAATCTCAGGAAGCTTCTTAGGCCCGAAAAGCAACGCGGCGACG

               401    -    451
UN08354        --> CCAGCGATCACCGCGAGCTCAGGGACACCGAGACCAAACAGAGCATTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- CCAGCGATCACCGCGAGCTCAGGGACACCGAGACCAAACAGAGCATTACA
EW715512       <-- CCAGCGATCACCGCGAGCTCAGGGACACCGAGACCAAACAGAGCATTACA
EY917155       <-- CCAGCGATCACCGCGAGCTCAGGGACACCGAGACCAAACAGAGCATTACA
FD981095       <-- CCAGCGATCACCGCGAGCTCAGGGACACCGAGACCAAACAGAGCATTACA
FD567796       --> ..................................................
FD976872       --> CCAGCGATCACCGCGAGCTCAGGGACACCGAGACCAAACAGAGCATTACA

               451    -    501
UN08354        --> AGTCAGTGCCGCCTTTCTCCTCCTCTGCTCCGGTCGAATCGCAACCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- AGTCAGTGCCGCCTTTCTCCTCCTCTGCTCCGGTCGAATCGCAACCAAAG
EW715512       <-- AGTCAGTGCCGCCTTTCTCCTCCTCTGCTCCGGTCGAATCGCAACCAAAG
EY917155       <-- AGTCAGTGCCGCCTTTCTCCTCCTATGCTCCGGTCGAATCGCAACCAAAG
FD981095       <-- AGTCAGTGCCGCCTTTCTCCTCCTCTGCTCCGGTCGAATCGCAACCAAAG
FD567796       --> ..................................................
FD976872       --> AGTCAGTGCCGCCTTTCTCCTCCTCTGCTCCGGTCGAATCGCAACCAAAG

               501    -    551
UN08354        --> AACGGGTCTTTGGTCTTCGTTGGGTGGTCGCTATGAAACAGTTGGAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- AACGGGTCTTTGGTCTTCGTTGGGTGGTCGCTATGAAACAGTTGGAGAAT
EW715512       <-- AACGGGTCTTTGGTCTTCGTTGGGTGGTCGCTATGAAACAGTTGGAGAAT
EY917155       <-- AACGGGTCTTTGGTCTTCGTTGGGTGGTCGCTATGAAACAGTTGGAGAAT
FD981095       <-- AACGGGTCTTTGGTCTTCGTTGGGTGGTCGCTATGAAACAGTTGGAGAAT
FD567796       --> ..................................................
FD976872       --> AACGGGTCTTTGGTCTTCGTTGGGTGGTCGCTATGAAACAGTTGGAGAAT

               551    -    601
UN08354        --> AAGGAAGAGCGAGATGAAGAGAGAGGCAGAGTGACTGGTGGCGGAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- AAGGAAGAGCGAGATGAAGAGAGAGGCAGAGTGACTGGTGGCGGAGAAGA
EW715512       <-- AAGGAAGAGCGAGATGAAGGGAGAGGCAGAGTGACTGGTGGCGGAGAAGA
EY917155       <-- AAGGAAGAGCGAGATGAAGAGAGAGGCAGAGTGACTGGTGGCGGAGAAGA
FD981095       <-- AAGGAAGAGCGAGATGAAGAGAGAGGCAGAGTGACTGGTGGCGGAGAAGA
FD567796       --> ..................................................
FD976872       --> AAGGAAGAGCGAGATGAAGAGAGAGGCAGAGTGACTGGTGGCGGAAAAGA

               601    -    651
UN08354        --> TAGAGTCGCAACCGATGTCGCCATTACTGCTCTCTTCCAATCCTTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- TAGAGTAGCAACCGATGTCGCCATTACTTCTCTCTTCCAATCCTTTTTTC
EW715512       <-- TAGAGTCGCAACCGATGTCGCCATTACTTCTCTCTTCCAATCC.......
EY917155       <-- TAGAGTCGCAACCGATGTCGCCATTACTGCTCTCTTCCAATCCTTTTTTT
FD981095       <-- TAGAGTCGCAACCGATGTCGCCATTACTGCTCTCTTCCAGTCCTTTTTTT
FD567796       --> ..................................................
FD976872       --> TAGAGTCGCAACCGATGTCGCCATTACTGCTCTCTTCCAGTCCTTTTTTT

               651    -    701
UN08354        --> TTTTCTTCTGGTTCTAAACGTTATCTCTGTTTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564275       <-- TTTTCTTCTGGTTCTAAACGTTATCTCTGTTTTCC
EW715512       <-- ...................................
EY917155       <-- TTTct..............................
FD981095       <-- TTTTCTTtcttctcc....................
FD567796       --> ...................................
FD976872       --> TTTTCTTtcttctcc....................