Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN08363

               1      -     51
UN08363        --> GGGTAAAGAAGAAACACACAAACACACTTTGAAGCTTTAATAATTTCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529825       <-- GGGTAAAGAAGAAACACACAAACACACTTTGAAGCTTTAATAATTTCTGA
EY936841       <-- ...........ggACACACAAACACACTTTGAAGCTTTAATAATTTCTGA
EX777184       <-- .................ACAAACACACTTTGAAGCTTTAATAATTTCTGA
EY910747       <-- .....................ggACACTTTGAAGCTTTAATAATTTCTGA
EV524959       --> GGGTAAAGAAGAAACACACAAACACACTTTGAAGCTTTAATAATTTCTGA
EY941216       --> ..........gagACACACAAACACACTTTGAAGCTTTAATAATTTCTGA
EX749117       --> .................ACAAACACACTTTGAAGCTTTAATAATTTCTGA
EX773392       --> .................ACAAACACACTTTGAAGCTTTAATAATTTCTGA
EY915978       --> .................ACAAACACACTTTGAAGCTTTAATAATTTCTGA
EY914773       --> .....................ggACACTTTGAAGCTTTAATAATTTCTGA
FY445498       --> .................................GCTTTA-TAATTTCTGA
FY445388       --> ...........................................TTTCTGA

               51     -    101
UN08363        --> CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529825       <-- CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATAGA
EY936841       <-- CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATAGA
EX777184       <-- CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATAGA
EY910747       <-- CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTC----A
EV524959       --> CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATAGA
EY941216       --> CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATAGA
EX749117       --> CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATAGA
EX773392       --> CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATAGA
EY915978       --> CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATAGA
EY914773       --> CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATA--
FY445498       --> CA-GCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATAGA
FY445388       --> CAAGCATCAAAAAGAGCTAAAAAGAAGATGGGAACAGCTACTTTCATAGA

               101    -    151
UN08363        --> TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTCTCAGATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529825       <-- TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTCTCAGATATG
EY936841       <-- TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTTTCAGATATG
EX777184       <-- TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTTTCAGATATG
EY910747       <-- TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTCTCAGATATG
EV524959       --> TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTCTCAGATATG
EY941216       --> TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTCTCAGATATG
EX749117       --> TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTCTCAGATATG
EX773392       --> TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTCTCAGATATG
EY915978       --> TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTCTCAGATATG
EY914773       --> --TTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTCTCAGATATG
FY445498       --> TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTCTCAGATATG
FY445388       --> TATTCTTCTTGCTATCCTCTTGCCTCCACTTGGAGTCTTTCTCAGATATG

               151    -    201
UN08363        --> GTTGCGGGGTAGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529825       <-- GTTGCGGGGTAGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGATAC
EY936841       <-- GTTGCGGGGTAGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGATAC
EX777184       <-- GTTGCGGGGTAGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGATAC
EY910747       <-- GTTGCGGGGTAGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGATAC
EV524959       --> GTTGCGGGGTAGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGATAC
EY941216       --> GTTGCGGGGTAGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGATAC
EX749117       --> GTTGCGGGGTAGAGTTTTGGATATGTTTGGTTTTGAAGCTGCTTGGATAC
EX773392       --> GTTGCGGGGTAGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGATAC
EY915978       --> GTTGCGGGGTAGAGTTTTGGATGTGTTCGGTTTTGACGCTGCTTGGATAC
EY914773       --> GTTGCGGGGTAGAGTTTg................................
FY445498       --> GTTGCGGGGTAGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGATAC
FY445388       --> GTTGCGGGGTAGAGTTTTGGATATGTTTGGTTTTGACGCTGCTTGGATAC

               201    -    251
UN08363        --> ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529825       <-- ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT
EY936841       <-- ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT
EX777184       <-- ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT
EY910747       <-- ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT
EV524959       --> ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT
EY941216       --> ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT
EX749117       --> ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT
EX773392       --> ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT
EY915978       --> ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT
EY914773       --> ..................................................
FY445498       --> ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT
FY445388       --> ATCCCTGGGATCATATACGCCCTTTATGTGCTCACCAAATGATTTACCAT

               251    -    301
UN08363        --> CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529825       <-- CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG
EY936841       <-- CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG
EX777184       <-- CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG
EY910747       <-- CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG
EV524959       --> CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG
EY941216       --> CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG
EX749117       --> CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG
EX773392       --> CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG
EY915978       --> CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG
EY914773       --> ..................................................
FY445498       --> CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG
FY445388       --> CTATCATCTCTTCTTGTATCTTCATCTCCTTGAACAGCTGTCTGGTCGTG

               301    -    351
UN08363        --> TTCTACTCTTTGTGTGCGACTGATTCAACGTTTATTTCATCAAATGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529825       <-- TTCTACTCTTTGTGTGCGACTGATTCAACGTTTATTTCATCAAATGGTTT
EY936841       <-- TTCTACTCTTTGTGTGCGACTGATTCAACGTTTATTTCATCAAATGGTTT
EX777184       <-- TTCTACTCTTTGTGTGCGACTGACTCAACGTTTATTTCATCAAATGGTTT
EY910747       <-- TTCTACTCTTTGTGTGCGACTGATTCAACGTTTATTTCATCAAATGGTTT
EV524959       --> TTCTACTCTTTGTGTGCGACTGATTCAACGTTTATTTCATCAAATGGTTT
EY941216       --> TTCTACTCTTTGTGTGCGACTGATTCAACGTTTATTTCATCAAATGGTTT
EX749117       --> TTCTACTCTTTGTGTGCGACTGATTCAACGTTTATTTCATCAAATGGTTT
EX773392       --> TTCTACTCTTTGTGTGCGACTGACTCAACGTTTATTTCATCAAATGGTTT
EY915978       --> TTCTACTCTTTGTGTGCGACTGATTCAACGTTTATTTCATCAAATGGTTT
EY914773       --> ..................................................
FY445498       --> TTCTACTCTTTGTGTGCGACTGATTCAACGTTTATTTCATCAAATGGTTT
FY445388       --> TTCTACTCTTTGTGTGCGACTGATTCAACGTTTATTTCATCAAATGGTTT

               351    -    401
UN08363        --> TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCACTGTTATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529825       <-- TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCACTGTTATAT  Raphanus raphanistrum subsp. maritimus
EY936841       <-- TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCAGTGTTATAT  Raphanus sativus cv Early Scarlet Globe
EX777184       <-- TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCACTGTTATAT  Raphanus raphanistrum subsp. landra
EY910747       <-- TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCAGTGTTATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV524959       --> TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCACTGTTATAT  Raphanus raphanistrum subsp. maritimus
EY941216       --> TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCAGTGTTATAT  Raphanus sativus cv Early Scarlet Globe
EX749117       --> TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCACTGTTATAT  Raphanus raphanistrum subsp. maritimus
EX773392       --> TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCACTGTTATAT  Raphanus raphanistrum subsp. landra
EY915978       --> TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCAGTGTTATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914773       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445498       --> TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCACTGTTATAT  Raphanus sativus cv GSK3-1
FY445388       --> TTATGTTTCGAGCAATTTAATTCATCGTTGTTGTGTTTGCACTGTTATAT  Raphanus sativus cv GSK3-1

               401    -    451
UN08363        --> AATTTTCTGTTGATATAAAGAAGACATCCTTTGTTATATAGCCTGCTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529825       <-- AATTTTCTGTTGATATAAAGAAGACATCCTTTGTTATATAGCCTGCTTAT  Raphanus raphanistrum subsp. maritimus
EY936841       <-- AATTTTCTGTTGATATAAAGAAGAGATCTTTTGTT...............  Raphanus sativus cv Early Scarlet Globe
EX777184       <-- AATTTTCTGTTGATATAAAGAAGACATCCTTTGc................  Raphanus raphanistrum subsp. landra
EY910747       <-- AATTTTCTGTTGATATAAAGAAGAGATCTTTTGT................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV524959       --> AATTTTCTGTTGATATAAAGAAGACATCCTTTGTTATATAGCCTGCTTAT  Raphanus raphanistrum subsp. maritimus
EY941216       --> AATTTTCTGTTGATATAAAGAAGAGATCTTTTGTT...............  Raphanus sativus cv Early Scarlet Globe
EX749117       --> AATTTTCTGTTGATATAAAGAAGACATCCTTTGTT...............  Raphanus raphanistrum subsp. maritimus
EX773392       --> AATTTTCTGTTGATATAAAGAAGACATCCTTTGc................  Raphanus raphanistrum subsp. landra
EY915978       --> AATTTTCTGTTGATATAAAGAAGAGATCTTTTGTTt..............  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914773       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445498       --> AATTTTCTGTTGATATAAAGAAGACATCCTTTGTTATATAGCCTGCT...  Raphanus sativus cv GSK3-1
FY445388       --> AATTTTCTGTTGATATAAAGAAGACATCCTTTGTTATATAGCCTGCT...  Raphanus sativus cv GSK3-1

               451    -    501
UN08363        --> TTGATTGGTCATATACTTTGAAATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529825       <-- TTGATTGGTCATATACTTTGAAATCAG
EY936841       <-- ...........................
EX777184       <-- ...........................
EY910747       <-- ...........................
EV524959       --> TTGATTGGTCATATACTTTGAAATCAG
EY941216       --> ...........................
EX749117       --> ...........................
EX773392       --> ...........................
EY915978       --> ...........................
EY914773       --> ...........................
FY445498       --> ...........................
FY445388       --> ...........................