Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN08444

               1      -     51
UN08444        --> GGAAAGTTCCTTGCTTCGTTGAGCTGAAGAAAGCATCGGTAACAAGGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................
FD949720       --> GGAAAGTTCCTTGCTTCGTTGAGCTGAAGAAAGCATCGGTAACAAGGCAG
EY945737       --> ..ggAGTTCCTTGCTTCGTTGAGCTGAAGAAAGCATCGGTAACAAGGCAG
EY946551       --> ..ggAGTTCCTTGCTTCGTTGAGCTGAAGAAAGCATCGGTAACAAGGCAG
EY941040       --> ..................ggGAGCTGAAGAAAGCATCGGTAACAAGGCAG
EY949023       --> ..................ggGAGCTGAAGAAAGCATCGGTAACAAGGCAG
FD941728       --> ..................ggGAGCTGAAGAAAGCATCGGTAACAAGGCAG
FD948838       --> .....................ggtgGAAGAAAGCATCGGTAACAAGGCAG
FY453230       --> ............................................AGGCAG
FD949892       --> ..................................................
FY439839       --> ..................................................
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               51     -    101
UN08444        --> CTCCTGAATCCCTAAAGCCTAAACCTTTCTCCCTCGCTGAGAGTACTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................
FD949720       --> CTCCTGAATCCCTAAAGCCTAAACCTTTCTCCCTCGCTGAGAGTACTCAC
EY945737       --> CTCCTGAATCCCTAAAGCCTAAACCTTTCTCCCTCGCTGAGAGTACTCAC
EY946551       --> CTCCTGAATCCCTAAAGCCTAAACCTTTCTCCCTCGCTGAGAGTACTCAC
EY941040       --> CTCCTGAATCCCTAAAGCCTAAACCTTTCTCCCTCGCTGAGAGTACTCAC
EY949023       --> CTCCTGAATCCCTAAAGCCTAAACCTTTCTCCCTCGCTGAGAGTACTCAC
FD941728       --> CTCCTGAATCCCTAAAGCCTAAACCTTTCTCCCTCGCTGAGAGTACTCAC
FD948838       --> CTCCTGAATCCCTAAAGCCTAAACCTTTCTCCCTCGCTGAGAGTACTCAC
FY453230       --> CTCCTGAATCCCTAAAGCCTAAACCTTTCTCCCTCGCTGAGAGTACTCAC
FD949892       --> .....ggATCCCTAAAGCCTAAACCTTTCTCCCTCGCTGAGAGTACTCAC
FY439839       --> ...............AGCCTAAACCTTTCTCCCTCGCTGAGAGTACTCAC
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               101    -    151
UN08444        --> TTTCACAAAGGCGATGAGTATCCCAATGGAGCTGATGTCCATCAGAACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................
FD949720       --> TTTCACAAAGGCGATGAGTATCCCAATGGAGCTGATGTCCATCAGAACCC
EY945737       --> TTTCACAAAGGCGATGAGTATCCCAATGGAGCTGATGTCCATCAGAACCC
EY946551       --> TTTCACAAAGGCGATGAGTATCCCAATGGAGCTGATGTCCATCAGAACCC
EY941040       --> TTTCACAAAGGCGATGAGTATCCCAATGGAGCTGATGTCCATCAGAACCC
EY949023       --> TTTCACAAAGGCGATGAGTATCCCAATGGAGCTGATGTCCATCAGAACCC
FD941728       --> TTTCACAAAGGCGATGAGTACCCCAATGGAGCTGATGTCCATCAGAACCC
FD948838       --> TTTCACAAAGGCGATGAGTATCCCAATGGAGCTGATGTCCATCAGAACCC
FY453230       --> TTTCACAAAGGCGATGAGTATCCCAATGGAGCTGATGTCCATCAGAACCC
FD949892       --> TTTCACAAAGGCGATGAGTATCCCAATGGAGCTGATGTCCATCAGAACCC
FY439839       --> TTTCACAAAGGCGATGAGTATCCCAATGGAGCTGATGTCCATCAGAACCC
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               151    -    201
UN08444        --> CTAATTCAACCTTCCTCCCCAGACCTCACTCTCGCCTCCTACCACACGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................
FD949720       --> CTAATTCAACCTTCCTCCCCAGACCTCACTCTCGCCTCCTACCACACGCC
EY945737       --> CTAATTCAACCTTCCTCCCCAGACCTCACTCTCGCCTCCTACCACACGCC
EY946551       --> CTAATTCAACCTTCCTCCCCAGACCTCACTCTCGCCTCCTACCACACGCC
EY941040       --> CTAATTCAACCTTCCTCCCCAGACCTCACTCTCGCCTCCTACCACACGCC
EY949023       --> CTAATTCAACCTTCCTCCCCAGACCTCACTCTCGCCTCCTACCACACGCC
FD941728       --> CTAATTCAACCTTCCTCCCCAGACCTCACTCTCGCCTCCTACCACACGCC
FD948838       --> CTAATTCAACCTTCCTCCCCAGACCTCACTCTCGCCTCCTACCACACGCC
FY453230       --> CTAATTCAACCTTCCTCCCCAGACCTCACTCTCGCCTCCTACCACACGCC
FD949892       --> CTAATTCAACCTTCCTCCCCAGACCTCACTCTCGCCTCCTACCACACGCC
FY439839       --> CTAATTCAACCTTCCTCCCCAGACCTCACTCTCGCCTCCTACCACACGCC
EY930167       --> .....................................gCTACCACACGCC
EV548710       --> ..................................................
FD966284       --> ..................................................

               201    -    251
UN08444        --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCCCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................
FD949720       --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCCCCAC
EY945737       --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCTCCAC
EY946551       --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCTCCAC
EY941040       --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCCCCAC
EY949023       --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCTCCAC
FD941728       --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCCCCAC
FD948838       --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCCCCAC
FY453230       --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCCCCAC
FD949892       --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCCCCAC
FY439839       --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCCCCAC
EY930167       --> ACGCTTCCTTCTCTCCGTTCCCAACACCTCCCCACCCGACGCCTCCCCAC
EV548710       --> ..................................................
FD966284       --> ..................................................

               251    -    301
UN08444        --> TTCTCCATCTCTCGTTTCTTCTACTGGGAGGCTGCGTCTCGGGTTTAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................
FD949720       --> TTCTCCATCTCTCGTTTCTTCTACTGGGAGGCTGCGTCTCGGGTTTAGCT
EY945737       --> TTCTCCATCTCTCGTTTCTTGTACTGG-AAGCTGCGTCTCCGGTTTACCT
EY946551       --> TTCTCCATCTCTCGTTTCTTGTACTGG-AAGCTGCGTCTCCGGTTTACCT
EY941040       --> TTCTCCATCTCTCGTTTCTTCTACTGGGAGGCTGCGTCTCGGGTTTAGCT
EY949023       --> TTCTCCATCTCTCGTTTCTTGTACTGGAAGGCTGCGTCTCCGGTTTACCT
FD941728       --> TTCTCCATCTCTCGTTTCTTCTACTGGGAGGCTGCGTCTCGGGTTTAGCT
FD948838       --> TTCTCCATCTCTCGTTTCTTCTACTGGGAGGCTGCGTCTCGGGTTTAGCC
FY453230       --> TTCTCCATCTCTCGTTTCTTCTACTGGGAGGCTGCGTCTCGGGTTTAGCT
FD949892       --> TTCTCCATCTCTCGTTTCTTCTACTGGGAGGCTGCGTCTCGGGTTTAGCT
FY439839       --> TTCTCCATCTCTCGTTTCTTCTACTGGGAGGCTGCGTCTCGGGTTTAGCT
EY930167       --> TTCTCCATCTCTCGTTTCTTCTACTGGGAGGCTGCGTCTCGGGTTTAGCT
EV548710       --> ..................................................
FD966284       --> ..................................................

               301    -    351
UN08444        --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTTGCTTCCGCTGCTTCCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................
FD949720       --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTTGCTTCCGCTGCTTCCCAC
EY945737       --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTCGCTTCCGCTGCTTCCCAC
EY946551       --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTCGCTTCCGCTGCTTCCCAC
EY941040       --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTTGCTTCCGCTGCTTCCCAC
EY949023       --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTCGCTTCCGCTGCTTCCCAC
FD941728       --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTTGCTTCCGCTGCTTCCCAC
FD948838       --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTTGCTTCCGCTGCTTCCCAC
FY453230       --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTTGCTTCCGCTGCTTCCCAC
FD949892       --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTTGCTTCCGCTGCTTCCCAC
FY439839       --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTTGCTTCCGCTGCTTCCCAC
EY930167       --> CAGATACCAAGCTTAATCGCTCCTTCTTCGTTGCTTCCGCTGCTTCCCAC
EV548710       --> ..................................................
FD966284       --> ..................................................

               351    -    401
UN08444        --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................
FD949720       --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGGAGAG
EY945737       --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
EY946551       --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
EY941040       --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
EY949023       --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
FD941728       --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
FD948838       --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
FY453230       --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
FD949892       --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
FY439839       --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
EY930167       --> GAGGATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
EV548710       --> ...GATTCGGAACCATCAAGTGTTGAGGTGGAGAAGGAGAAGGAGAAGAG
FD966284       --> ..................................................

               401    -    451
UN08444        --> TGTAGTAGATGGTGACGATGTTGATACATCTCAGGAAGCGTGGAAGCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD949720       --> TGTAGTAGATGGTGACGATGTTGATACATCTCAGGAAGCGTGGAAGCAAA  Raphanus sativus cv Early Scarlet Globe
EY945737       --> TGTAGTAGATGGTGACGATGTCGATACATCTCAGGAGGCGTGGAAGCAGA  Raphanus sativus cv Rat-Tail Radish #3870
EY946551       --> TGTAGTAGATGGTGACGATGTCGATACATCTCAGGAGGCGTGGAAGCAGA  Raphanus sativus cv Rat-Tail Radish #3870
EY941040       --> TGTAGTAGATGGTGACGATGTTGATACATCTCAGGAAGCGTGGAAGCAAA  Raphanus sativus cv Early Scarlet Globe
EY949023       --> TGTAGTAGATGGTGACGATGTCGATACATCTCAGGAGGCGTGGAAGCAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD941728       --> TGTAGTAGATGGTGACGATGTTGATACATCTCAGGAAGCGTGGAAGCAAA  Raphanus sativus var. oleiformis
FD948838       --> TGTAGTAGATGGTGACGATGTTGATACATCTCAGGAAGCGTGGAAGCAAA  Raphanus sativus cv Early Scarlet Globe
FY453230       --> TGTAGTAGATGGTGACGATGTCGATACATCTCAGGAGGCGTGGAAGCAGA  Raphanus sativus cv GSK3-1
FD949892       --> TGTAGTAGATGGTGACGATGTTGATACATCTCAGGAAGCGTGGAAGCAAA  Raphanus sativus cv Early Scarlet Globe
FY439839       --> TGTAGTAGATGGTGACGATGTCGATACATCTCAGGAGGCGTGGAAGCAGA  Raphanus sativus cv GSK3-1
EY930167       --> TGTAGTAGATGGTGACGATGTTGATACATCTCAGGAAGCGTGGAAGCAAA  Raphanus sativus var. oleiformis
EV548710       --> TGTAGTAGATGGTGACGATGTTGATACATCTCAGGAAGCGTGGAAGCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966284       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN08444        --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD949720       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGTCG  Raphanus sativus cv Early Scarlet Globe
EY945737       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGACG  Raphanus sativus cv Rat-Tail Radish #3870
EY946551       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGACG  Raphanus sativus cv Rat-Tail Radish #3870
EY941040       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGTCG  Raphanus sativus cv Early Scarlet Globe
EY949023       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGACG  Raphanus sativus cv Rat-Tail Radish #3870
FD941728       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGTCG  Raphanus sativus var. oleiformis
FD948838       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGTCG  Raphanus sativus cv Early Scarlet Globe
FY453230       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGACG  Raphanus sativus cv GSK3-1
FD949892       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGTCG  Raphanus sativus cv Early Scarlet Globe
FY439839       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGACG  Raphanus sativus cv GSK3-1
EY930167       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGTCG  Raphanus sativus var. oleiformis
EV548710       --> CCCTCGCGTCTGTCAAGGAGCAGGTTTCGAAGATTCAGAGCGTGTCGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966284       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN08444        --> GAGGCGTACAATGTGAACTCGCAAAAGGCGATGACTATTTTGAAAGATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD949720       --> GAGGCGTACAATGTGAACTCGCAAAAGGCGATGACTATTTTGAAAGATAC  Raphanus sativus cv Early Scarlet Globe
EY945737       --> GAGGCGTACAATGTAAACTCCCAAAAGGCGATGACTATTTTGAAAGATAC  Raphanus sativus cv Rat-Tail Radish #3870
EY946551       --> GAGGCGTACAATGTAAACTCCCAAAAGGCGATGACTATTTTGAAAGATAC  Raphanus sativus cv Rat-Tail Radish #3870
EY941040       --> GAGGCGTACAATGTGAACTCGCAAAAGGCGATGACTATTTTGAAAGATAC  Raphanus sativus cv Early Scarlet Globe
EY949023       --> GAGGCGTACAATGTAAACTCCCAAAAGGCGATGACTATTTTGAAAGATAC  Raphanus sativus cv Rat-Tail Radish #3870
FD941728       --> GAGGCGTACAATGTGAACTCGCAAAAGGCGATGACTATTTTGGAAGATAC  Raphanus sativus var. oleiformis
FD948838       --> GAGGCGTACAATGTGAACTCGCAAAAGGCGATGACTATTTTGAAAGATAC  Raphanus sativus cv Early Scarlet Globe
FY453230       --> GAGGCGTACAATGTAAACTCCCAAAAGGCGATGACTATTTTGAAAGATAC  Raphanus sativus cv GSK3-1
FD949892       --> GAGGCGTACAATGTGAACTCGCAAAAGGCGATGACTATTTTGAAAGATAC  Raphanus sativus cv Early Scarlet Globe
FY439839       --> GAGGCGTACAATGTAAACTCCCAAAAGGCGATGACTATTTTGAAAGATAC  Raphanus sativus cv GSK3-1
EY930167       --> GAGGCGTACAATGTGAACTCGCAAAAGGCGATGACTATTTTGAAAGATAC  Raphanus sativus var. oleiformis
EV548710       --> GAGGCGTACAATGTGAACTCGCAAAAGGCGATGACTATTTTGAAAGATAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966284       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN08444        --> TTCCGAGCAGCTTAGGATTCAAGCGGAGAAGGCCAAGGAAGAGTTGGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD949720       --> TTCCGAGCAGCTTAGGATTCAAGCGGAG......................  Raphanus sativus cv Early Scarlet Globe
EY945737       --> TTCCGAGCAGCTCAGGATTCAAGCGGAGAAGGCTAAGGAAGAGTTGGGTA  Raphanus sativus cv Rat-Tail Radish #3870
EY946551       --> TTCCGAGCAGCTCAGGATTCAAGCGGAGAAGGCTAAGGAAGAGTTGGGTA  Raphanus sativus cv Rat-Tail Radish #3870
EY941040       --> TTCCGAGCAGCTTAGGATTCAAGCGGAGAAGGCCAAGGAAGAGTTGGGTA  Raphanus sativus cv Early Scarlet Globe
EY949023       --> TTCCGAGCAGCTCAGGATTCAAGCGGA.......................  Raphanus sativus cv Rat-Tail Radish #3870
FD941728       --> TTCCGAGCAGCTTAGGATTCAAGCGGAGAAGGCCAAGGAAGAGTTGGGTA  Raphanus sativus var. oleiformis
FD948838       --> TTCCGAGCAGCTTAGGATTCAAGCGGAGAAG-CCAAGGAAGAGTTGGGTA  Raphanus sativus cv Early Scarlet Globe
FY453230       --> TTCCGAGCAGCTCAGGATTCAAGCGGAGAAGGCTAAGGAAGAGTTGGGTA  Raphanus sativus cv GSK3-1
FD949892       --> TTCCGAGCAGCTTAGGATTCAAGCGGAGAAGGCCAAGGAAGAGTTGGGTA  Raphanus sativus cv Early Scarlet Globe
FY439839       --> TTCCGAGCAGCTCAGGATTCAAGCGGAGAAGGCTAAGGAAGAGTTGGGTA  Raphanus sativus cv GSK3-1
EY930167       --> TTCCGAGCAGCTTAGGATTCAAGCGGAGAAGGCCAAGGAAGAGTTGGGTA  Raphanus sativus var. oleiformis
EV548710       --> TTCCGAGCAGCTTAGGATTCAAGCGGAGAAGGCCAAGGAAGAGTTGGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966284       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN08444        --> CTAAGGCTAAAGAGGTTGGGG-AGGAAGGGAGAGAGTATATTTTGAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ..................................................
FD949720       --> ..................................................
EY945737       --> Cg................................................
EY946551       --> C.................................................
EY941040       --> CTAAGGCTAAAGAGGTTGGGG-AGG.........................
EY949023       --> ..................................................
FD941728       --> CTAAGGCTAAAGAGGTTGGGG-AGGAAGGGAGAGAGTAT...........
FD948838       --> C.................................................
FY453230       --> CGAAGGCTAAAGAGGTTGGGG-AGGAAGGGAGAGAGTATATTTTGAAAGC
FD949892       --> C.................................................
FY439839       --> CGAAGGCTAAAGAGGTTGGGG-AGGAAGGGAGAGAGTATATTTTGAAAGC
EY930167       --> CTAAGG-TAAAGAGGTTGGGGGAGGAAGGGAGAGA...............
EV548710       --> CTAAG.............................................
FD966284       --> ..................................................

               651    -    701
UN08444        --> AGCGGAGGAGTCACCTTCTGATGTGAAGGAGATTGTTGAAGCTTTCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ...................GATGTGAAGGAGATCGTTGAAGCTTTCTCTT
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> AGCGGAGGAGTCACCTTCTGATGTGAAGGAGATTGTTGAAGCTTTCTCTT
FD949892       --> ..................................................
FY439839       --> AGCGGAGGAGTCACCTTCTGATGTGAAGGAGATTGTTGAAGCTTTCTCTT
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               701    -    751
UN08444        --> CCACTGAGGATCTGAGGGATGTGTCTCGGACTCAAGATTTTCATGTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- CCACTGAGGATCTTAGGGATGTGTCTCGGACTCAAGATTTTCATGTTGGG
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> CCACTGAGGATCTGAGGGATGTGTCTCGGACTCAAGATTTTCATGTTGGG
FD949892       --> ..................................................
FY439839       --> CCACTGAGGATCTGAGGGATGTGTCTCGGACTCAAGATTTTCATGTTGGG
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               751    -    801
UN08444        --> ATACCTTATGGTCTGCTTCTGTTTGTGGGTGGTTTCCTTTCCTTTATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ATACCTTATGGTCTGCTTCTGTTTGTGGGTGGTTTCCTTTCCTTTATGAT
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> ATACCTTATGGTCTGCTTCTGTTTGTGGGTGGTTTCCTTTCCTTTATGAT
FD949892       --> ..................................................
FY439839       --> ATACCTTATGGTCTGCTTCTGTTTGTGGGTGGTTTCCTTTCCTTTATGAT
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               801    -    851
UN08444        --> ATCGGGGAGCATTCCTGCCATTAGGTTTGGGGTCATTCTTGGTGGAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ATCGGGGAGCATTCCTGCCATTAGGTTTGGGGTCGTTCTTGGTGGAGCTC
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> ATCGGGGAGCATTCCTGCCATTAGGTTTGGGGTCATTCTTGGTGGAGCTC
FD949892       --> ..................................................
FY439839       --> ATCGGGGAGCATTCCTGCCATTAGGTTTGGGGTCATTCTTGGTGGAGCTC
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               851    -    901
UN08444        --> TTTTTGCACTGAGCATGGCTAGTCTTAAGGCTCAGAGGATTGGAGAGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- TTTTTGCACTGAGCATGGCTAGTCTTAAGGCTCAGAGGATTGGAGAGTCA
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> TTTTTGCACTGAGCATGGCTAGTCTTAAGGCTCAGAGGATTGGAGAGTCA
FD949892       --> ..................................................
FY439839       --> TTTTTGCACTGAGCATGGCTAGTCTTAGGGCTCAGAAGATTGGAGAGTCA
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               901    -    951
UN08444        --> TCTGCTAAGTTCTTAAAAGGACAGATGGCTATAGTGGCAATCATATTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- TCTGCTAAGTTCTTAAAAGGACAGATGGCTATAGTGGCAATCATATTTTT
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> TCTGCT............................................
FD949892       --> ..................................................
FY439839       --> TCTGCTAAGTTCTTA...................................
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               951    -   1001
UN08444        --> GAGAGAGTTGAAGTTGGTACTGTTTCAGAGATCTACGTTCATGGGGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- GAGAGAGTTGAAGTTGGTACTGTTTCAGAGATCTACGTTCATGGGGTTCT
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> ..................................................
FD949892       --> ..................................................
FY439839       --> ..................................................
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               1001   -   1051
UN08444        --> TAACCACCCTTACGAGTGGCGGTGTGTTGGCGTTTTACGGGTACAAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- TAACCACCCTTACGAGTGGCGGTGTGTTGGCGTTTTACGGGTACAAGTTG
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> ..................................................
FD949892       --> ..................................................
FY439839       --> ..................................................
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               1051   -   1101
UN08444        --> ATGAGCAGCAAAGAAAAGGGACCAAACAAAGAACAAGCTGGAGAAGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- ATGAGCAGCAAAGAAAAGGGACCAAACAAAGAACAAGCTGGAGAAGGAGA
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> ..................................................
FD949892       --> ..................................................
FY439839       --> ..................................................
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ..................................................

               1101   -   1151
UN08444        --> TGAAACTAGCGAAGGGTTTGTTAGAAGAGAAGGATAGAGAAATGGTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- TGAAACTAGCGAAGGGTTTGTTAGAAGAGAAGGATAGAGAAATGGTAACA
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> ..................................................
FD949892       --> ..................................................
FY439839       --> ..................................................
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> ............................................GTAACA

               1151   -   1201
UN08444        --> TGAGAGCATCATACTCTGTTATAGTGATATCCGAACTCTTATCTTCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- TGAGAGCATCATACTCTGTTATAGTGATATCCGAACTCTTATCTTCTCTC
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> ..................................................
FD949892       --> ..................................................
FY439839       --> ..................................................
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> TGAGAGCATCATACTCTGTTATAGTGATATCCGAACTCTTATCTTCTCTC

               1201   -   1251
UN08444        --> TTTTTAAGTTGCTGTACAACTTTTGTGATCAATCATCTTCTAAACTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- TTTTTAAGTTGCTGTACAACTTTTGTGATCAATCATCTTCTAAACTTCTG
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> ..................................................
FD949892       --> ..................................................
FY439839       --> ..................................................
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> TTTTTAAGTTGCTGTACAACTTTTGTGATCAATCATCTTCTAAACTTCTG

               1251   -   1301
UN08444        --> TGTACTTATCTGTATTTGGATTTTGTGGGAGTCCTTTTACCACATATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- TGTACTTATCTGTATTTGGATTTTGTGGGAGTCCTTTTACCACATATCAA
FD949720       --> ..................................................
EY945737       --> ..................................................
EY946551       --> ..................................................
EY941040       --> ..................................................
EY949023       --> ..................................................
FD941728       --> ..................................................
FD948838       --> ..................................................
FY453230       --> ..................................................
FD949892       --> ..................................................
FY439839       --> ..................................................
EY930167       --> ..................................................
EV548710       --> ..................................................
FD966284       --> TGTACTTATCTGTATTTGGATTTTGTGGGAGTCCTTTTACCACATATCAA

               1301   -   1351
UN08444        --> CAAACAATAAACAGGTTAGGCTCATCTGAAGATGCCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530598       <-- CAAACAATAAACAGGTTAGGCTCATCTGAAGATGCCACC
FD949720       --> .......................................
EY945737       --> .......................................
EY946551       --> .......................................
EY941040       --> .......................................
EY949023       --> .......................................
FD941728       --> .......................................
FD948838       --> .......................................
FY453230       --> .......................................
FD949892       --> .......................................
FY439839       --> .......................................
EY930167       --> .......................................
EV548710       --> .......................................
FD966284       --> CAAACAATAAACAGGTTAGGCTg................