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Alignment for radish unigene UN08478

               1      -     51
UN08478        --> CAGAAAGATCAATTTTGTATTTACATCAAACTAGTTTAACTAGATAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ..................................................
FD978552       <-- ..................................................
EY913469       <-- ..................................................
EX770360       <-- ..................................................
EW726792       <-- ..................................................
EY904856       <-- ..................................................
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> CAGAAAGATCAATTTTGTATTTACATCAAACTAGTTTAACTAGATAGCTT
EX774566       --> ..................................................
FD547079       --> ..................................................
FD974775       --> ..................................................

               51     -    101
UN08478        --> CACAATTTGGTTACTATTGTAACTAATTTTTGCTAATTTTATATTACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ..............................................cacG
FD978552       <-- ..................................................
EY913469       <-- ..................................................
EX770360       <-- ..................................................
EW726792       <-- ..................................................
EY904856       <-- ..................................................
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> CACAATTTGGTTACTATTGTAACTAATTTTTGCTAATTTTATATTACATG
EX774566       --> ...............acTGTAACTAATTTTTGCTAATTTTATATTACATG
FD547079       --> ..................GTAACTAATTTTTGCTAATTTTATATTACACG
FD974775       --> ......................CTAATTTTTGCTAATTTTATATTACATG

               101    -    151
UN08478        --> AGGGTTACATCATACATATAGCACTTAAACTTAACAAGGCCAATCATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- AGGGTTACATCATACATATAGCACTTAAACTTAACAAGGCCAATCATCCA
FD978552       <-- ..................................................
EY913469       <-- ..................................................
EX770360       <-- ..................................................
EW726792       <-- ..................................................
EY904856       <-- ..................................................
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> AGGGTTACATCATACATATAGCACTTAAACTTAACAAGGCCAATCATCCA
EX774566       --> AGGGTTACATCATACATATAGCACTTAAACTTAACAAGGCCAATCATCCA
FD547079       --> AGGGTTACATCATACATATAGCACTTAAACTTAACAAGGCCAATCATCCA
FD974775       --> AGGGTTACATCATACATATAGCACTTAAACTTAACAAGGCCAATCATCCA

               151    -    201
UN08478        --> ATATTGCCCCACACAGCCAACTTAAACACCAAACCAACACAGCAACCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ATATTGCCCCACACAGCCAACTTAAACACCAAACCAACACAGCAACCAAA
FD978552       <-- ..................................................
EY913469       <-- ..................................................
EX770360       <-- ..................................................
EW726792       <-- ..................................................
EY904856       <-- ..................................................
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> ATATTGCCCCACACAGCCAACTTAAACACCAAACCAACACAGCAACCAAA
EX774566       --> ATATTGCCCCACACAGCCAACTTAAACACCAAACCAACACAGCAACCAAA
FD547079       --> ATATTGCCCCACACAGCCAACTTAAACACCAAACCAACACAGCAACCAAA
FD974775       --> ATATTGCCCCACACAGCCAACTTAAACACCAAACCAACACAGCAACCAAA

               201    -    251
UN08478        --> ATTAACAAAACACCCTTCCTCTCACGATCGTGGACGCAAGGCTTCAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ATTAACAAAACACCCTTCCTCTCACGATCGTGGACGCAAGGCTTCAAAAT
FD978552       <-- ..................................................
EY913469       <-- ..................................................
EX770360       <-- ..................................................
EW726792       <-- ..................................................
EY904856       <-- ..................................................
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> ATTAACAAAACACCCTTCCTCTCACGATCGTGGACGCAAGGCTTCAAAAT
EX774566       --> ATTAACAAAACACCCTTCCTCTCACGATCGTGGACGCAAGGCTTCAAAAT
FD547079       --> ATTAACAAAACACCCTTCCTCTCACGATCGTGGACGCAAGGCTTCAAAAT
FD974775       --> ATTAACAAAACACCCTTCCTCTTACGATCGTGGACGCAAGGCTTCAAAAT

               251    -    301
UN08478        --> TCAGCCCATGAGCCACTTGACCAGCACAAGCAACCCACGGGTTAATTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- TCAGCCCATGAGCCACTTGACCAGCACAAGCAACCCACGGGTTAATTGGA
FD978552       <-- ..................................................
EY913469       <-- ..................................................
EX770360       <-- ..................................................
EW726792       <-- ..................................................
EY904856       <-- ..................................................
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> TCAGCCCATGAGCCACTTGACCAGCACAAGCAACCCACGGGTTAATTGGA
EX774566       --> TCAGCCCATGAGCCACTTGACCAGCACAAGCAACCCACGGGTTAATTGGA
FD547079       --> TCAGCCCATGAGCCACTTGACCAGCACAAGCAACCCACGGGTTAATTGGA
FD974775       --> TCAGCCCATGAGCCACTTGACCAGCACAAGCAACCCACGGGTTAATTGGA

               301    -    351
UN08478        --> ACGGGTCGCTGATTGTGTTGATGGTTTGGTGATGGCCCAGCCACACGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ACGGGTCGCTGATTGTGTTGATGGTTTGGTGATGGCCCAGCCACACGTTC
FD978552       <-- .....................TGGTTTGGTGATGGCCCAGCCACACGCTC
EY913469       <-- ..................................................
EX770360       <-- ..................................................
EW726792       <-- ..................................................
EY904856       <-- ..................................................
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> ACGGGTCGCTGATTGTGTTGATGGTTTGGTGATGGCCCAGCCACACGCTC
EX774566       --> ACGGGTCGCTGATTGTGTTGATGGTTTGGTGATGGCCCAGCCACACGCTC
FD547079       --> ACGGGTCGCTGATTGTGTTGATGGTTTGGTGATGGCCCAGCCACACGTTC
FD974775       --> ACGGGTCGCTGATTGTGTTGATGGTTTGGTGATGGCCCAGCCACACGCTC

               351    -    401
UN08478        --> ACACGAAGGACACATGATGAGTGTAGTCGGTGGAGTCATTTGGCCATAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ACACGAAGGACACATGATGAGTGTAGTCGGTGGAGTCATTTGGCCATAGA
FD978552       <-- ACACGAAGGACACATGATGAGTGTAGTCGGTGGAGTCATTTGGCCATAGA
EY913469       <-- ..................................................
EX770360       <-- ..................................................
EW726792       <-- ..................................................
EY904856       <-- ..................................................
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> ACACGAAGGACACATGATGAGTGTAGTCGGTGGAGTCATTTGGCCATAGA
EX774566       --> ACACGAAGGACACATGATGAGTGTAGTCGGTGGAGTCATTTGGCCATAGA
FD547079       --> ACACGAAGGACACATGATGAGTGTAGTCGGTGGAGTCATTTGGCCATAAA
FD974775       --> ACACGAAGGACACATGATGAGTGTAGTCGGTGGAGTCATTTGGCCATAGA

               401    -    451
UN08478        --> ACTGTGGAGACAGCTTGAGCGTTCGAAGCTCCATAGCCTCTTTCTGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ACTGTGGAGACAGCTTGAGCGTTCGAAGCTCCATAGCCTCTTTCTGAAGT
FD978552       <-- ACTGTGGAGACAGCTTGAGCGTTCGAAGCTCCATAGCCTCTTTCTGAAGT
EY913469       <-- ..................................................
EX770360       <-- ..................................................
EW726792       <-- ..................................................
EY904856       <-- ..................................................
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> ACTGTGGAGACAGCTTGAGCGTTCGAAGCTCCATAGCCTCTTTCTGAAGT
EX774566       --> ACTGTGGAGACAGCTTGAGCGTTCGAAGCTCCATAGCCTCTTTCTGAAGT
FD547079       --> ACTGTGGAGACAGCTTGAGCGTTCGAAGCTCCATAGCCTCTTTCTGAAGT
FD974775       --> ACTGTGGAGACAGCTTGAGCGTTCGAAGCTCCATAGCCTCTTTCTGAAGT

               451    -    501
UN08478        --> CGCCTATTCTCCTCCGTTAGTTTCTCTACGCATCGTTTCAAGTATTCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- CGCCTATTCTCCTCCGTTAGTTTCTCTACGCATCGTTTCAAGTATTCACA
FD978552       <-- CGCCTATTCTCCTCCGTTAGTTTCTCTACGCATCGTTTCAAGTATTCACA
EY913469       <-- ......................TCTCTACGCATCGTT-CAAGTAT-CACA
EX770360       <-- ................................................CA
EW726792       <-- ..................................................
EY904856       <-- ..................................................
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> CGCCTATTCTCCTCCGTTAGTTTCTCTACGCATCGTTTCAAGTATTCACA
EX774566       --> CGCCTATTCTCCTCCGTTAGTTTCTCTACGCATCGTTTCAAGTATTCACA
FD547079       --> CGCCTATTCTCCTCCGTTAGTTTCTCTACGCATCGTTTCAAGTATTCACA
FD974775       --> CGCCTATTCTCCTCCGTTAGTTTCTCTACGCATCGTTTCAAGTATTCACA

               501    -    551
UN08478        --> ATCCACCTCCGTTTGCTTTAATTTGGTTCTAGCTCTTCTGTTCTGAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ATCCACCTCCGTTTGCTTTAATTTGGTTCTAGCTCTTCTGTTCTGAAACC
FD978552       <-- ATCCACCTCCGTTTGCTTTAATTTGGTTCTAGCTCTTCTGTTCTGAAACC
EY913469       <-- ATCCACCTCCGTTTGCTTTA-TTTGGTTCTAGCTCTTCTGTTCTGAAACC
EX770360       <-- ATCCAC-TCCGTTTGCTTTAATTTGGTTCTAGCTCTTCTGT-CTGAAACC
EW726792       <-- ............TTGCTTTA-TTTGGTTCTAGCTCTTCTGT-CTGAAACC
EY904856       <-- ..................................................
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> ATCCACCTCCGTTTGCTTTAATTTGGTTCTAGCTCTTCTGTTCTGAAACC
EX774566       --> ATCCACCTCCGTTTGCTTTAATTTGGTTCTAGCTCTTCTGTTCTGAAACC
FD547079       --> ATCCACCTCCGTTTGCTTTAATTTGGTTCTAGCTCTTCTGTTCTGAAACC
FD974775       --> ATCCACCTCCGTTTGCTTTAATTTGGTTCTAGCTCTTCTGTTCTGAAACC

               551    -    601
UN08478        --> AGACTTCCACTTGTCTTGCTGTCAAGCTCAACTTCTTGGCCAAAGCTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- AGACTTCCACTTGTCTTGCTGTCAAGCTCAACTTCTTGGCCAAAGCTAGC
FD978552       <-- AGACTTCCACTTGTCTTGCTGTCAAGCTCAACTTCTTGGCCAAAGCTAGC
EY913469       <-- AGACTTCCACTTGTCTTGCTGTCAAGCTCAACTTCTTGGCCAAAGCTAGC
EX770360       <-- AGACTTCCACTTGTCTTGCTGTCAAGCTCAACTTCTTGGCCAAAGCTAGC
EW726792       <-- AGACTTCCACTTGTCTTGCTGTCAAGCTCAACTTCTTGGCCAAAGCTAGC
EY904856       <-- ................................................aC
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> AGACTTCCACTTGTCTTGCTGTCAAGCTCAACTTCTTGGCCAAAGCTAGC
EX774566       --> AGACTTCCACTTGTCTTGCTGTCAAGCTCAACTTCTTGGCCAAAGCTAGC
FD547079       --> AGACTTCCACTTGTCTTGCTGTCAAGCTCAACTTCTTGGCCAAAGCTAGC
FD974775       --> AGACTTCCACTTGTCTTGCTGTCAAGCTCAACTTCTTGGCCAAAGCTAGC

               601    -    651
UN08478        --> TTCTGTTTGGGATTGAGAGTGTTGTGTTCTTTGAAAGTGTCTTCAAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- TTCTGTTTGGGATTGAGAGTGTTGTGTTCTTTGAAAGTGTCTTCAAGAAA
FD978552       <-- TTCTGTTTGGGATTGAGAGTGTTGTGTTCTTTGGAAGTGTCTTCAAGAAA
EY913469       <-- TTCTGTTTGGGATTGAGAGTGTTGTGTTCTTTGAAAGTGTCTTCAAGAAA
EX770360       <-- TTCTGTTTGGGATTGAGAGTGTTGTGTTCTTTGAAAGTGTCTTCAAGAAA
EW726792       <-- TTCTGTTTGGGATTGAGAGTGTTGTGTTCTTTGAAAGTGTCTTCAAGAAA
EY904856       <-- TTCTGTTTGGGATTGAGAGTGTTGTGTTCTTTGAAAGTCTCTTCAAGAAA
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> TTCTGTTTGGGATTGAGAGTGTTGTGTTCTTTGAAAGTGTCTTCAAGAAA
EX774566       --> TTCTGTTTGGGATTGAGAGTGTTGTGTTCTTTGAAAGTGTCTTCAAGAAA
FD547079       --> TTCTGTTTGGGATTGAGAGTGTTGTGTTCTTTGAAAGTGTCTTCAAGAAA
FD974775       --> TTCTGTTTGGGATTGAGAGTGTTGTGTTCTTTGGAAGTGTCTTCAAGAAA

               651    -    701
UN08478        --> AGCAGACTGATCTTTAGATAATCGGAGCTTCTTCCTCGACGTTTCACCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- AGCAGACTGATCTTTAGATAATCGGAGCTTCTTCCTCGACGTTTCACCGC
FD978552       <-- AGCAGACTGATCTTTAGATAATCGGAGCTTCTTCCTCGACGTTTCACCGC
EY913469       <-- AGCAGACTGATCTTTAGATAATCGGAGCTTCTTCCTCGACGTTTCACCGC
EX770360       <-- AGCAGACTGATCTTTAGATAATCGGAGCTTCTTCCTCGACGTTTCATCGC
EW726792       <-- AGCAGACTGATCTTTAGATAATCGGAGCTTCTTCCTCGACGTTTCACCGC
EY904856       <-- AGCAGACTGATCTTTAGATAATCGGAGCTTCTTCCTCGACGTTTCACCGC
FD949125       <-- ..................................................
EV537346       <-- ..................................................
EY909692       --> AGCAGACTGATCTTTAGATAATCGGAGCTTCTTCCTCGACGTTTCACCGC
EX774566       --> AGCAGACTGATCTTTAGATAATCGGAGCTTCTTCCTCGACGTTTCATCGC
FD547079       --> A.................................................
FD974775       --> AGCAGACTGATCTTTAGATAATCGGAGCTTCTTCCTCGACGTTTCACCGC

               701    -    751
UN08478        --> CGTCTTCTTCTTCGTCGGAGGTTCCACGCGAGTAACCTCTATCCGGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- CGTCTTCTTCTTCGTCGGAGGTTCCACGCGAGTAACCTCTATCCGGAGTG
FD978552       <-- CGTCTTCTTCTTCGTCGGAGGTTCCACGCGAGTAACCTCTATCCGGAGTG
EY913469       <-- CGTCTTCTTCTTCGTCGGAGGTTCCACGCGAGTAACCTCTATCCGGAGTG
EX770360       <-- CGTCTTCTTCTTCGTCGGAGGTTCCACGCGAGTAACCTCTATCCGGAGTG
EW726792       <-- CGTCTTCTTATTCGTCGGAGGTTCCACGCGAGTAACCTCTATCCGGAGTG
EY904856       <-- CGTCTTCTTCTTCGTCCGAGGTTACACGCGAGTAACCTCTATCCGGAGTG
FD949125       <-- ...CTTCTTCTTCGTCGGAGGTTCCACGCGAGTAACCTCTATCCGGAGTG
EV537346       <-- ..................................................
EY909692       --> CGTCTTCTTCTTCGTCGGAGGTTCCACGCGAGTAACCTCTATCCGGAGTG
EX774566       --> CGTCTTCTTCTTCGTCGGAGGTTCCACGCGAGTAACCTCTATCCGGAGTG
FD547079       --> ..................................................
FD974775       --> CGTCTTCTTCTT......................................

               751    -    801
UN08478        --> ATATCATCGTGGTGGTCGGAGATTCCTTCTCTCTCACTCCTCTTCCCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ATATCATCGTGGTGGTCGGAGAT...........................
FD978552       <-- ATATCATCGTGGTGGTCGGAGATTCCTTCTCTCTCACTCCTCTTCCCGCC
EY913469       <-- ATATCATCGTGGTGGTCGGAGATTCCTTCTCTCTCACTCCTCTTCCCGCC
EX770360       <-- ATATCATCGTGGTGGTCGGAGATTCCTTCTCTCTCACTCCTCTTCCCGCC
EW726792       <-- ATATCATCGTGGTGGTCGGAGATTCCTTCTCTCTCACTCCTCTTCCCGCC
EY904856       <-- ATATCATCGTGGTGGTCGGAGATTCCTTCTCTCTCACTCCTCTTCCCGCC
FD949125       <-- ATATCATCGTGGTGGTCGGAGATTCCTTCTCTCTCACTCCTCTTCCCGCC
EV537346       <-- ..................................................
EY909692       --> ATATCATCGTGGTGGTCGGAGATTCCTTCTCTCTCACTCCTCTTCCCGCC
EX774566       --> ATATCATCGTGGTGGTCGGAGATTCCTTCTCTCTCACTCCTCTTCCCGCC
FD547079       --> ..................................................
FD974775       --> ..................................................

               801    -    851
UN08478        --> GCTTATGGTGCTCGAGATCGTACTGTTGGGAGACGACACTCCTGCTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978552       <-- GCTTATGGTGCTCGAGATCGTACTGTTAGGAGACGACACTCCTGCTTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY913469       <-- GCTTATGGTGCTCGAGATCGTACTGTTAGGAGACGACACTCCTGCTTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX770360       <-- GCTTATGGTGCTCGAGATCGTACTGTTGGGAGACGACACTCCTGCCTCCT  Raphanus raphanistrum subsp. landra
EW726792       <-- GCTTATGGTGCTCGAGATCGTACTGTTGGGAGACGACACTCCTGCCTCCT  Raphanus sativus cv Early Scarlet Globe
EY904856       <-- GCTTATGGTGCTCGAGATCGTACTGTTGGGAGACGACACTCCTGCTTCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949125       <-- GCTTATGGTGCTCGAGATCGTACTGTTGGGAGACGACACTCCTGCCTCCT  Raphanus sativus cv Early Scarlet Globe
EV537346       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909692       --> GCTTATGGTGCTCGAGATCGTACTGTTAGGAGACGACACTCCTGCTTCtc  Raphanus raphanistrum subsp. raphanistrum (NY)
EX774566       --> G.................................................  Raphanus raphanistrum subsp. landra
FD547079       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974775       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               851    -    901
UN08478        --> CCTCGCAATCCACCGTTGTTGGAATACTGTTCACGTCTATTTTGCCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ..................................................
FD978552       <-- CCTCGCAATCCACCGTTGTTGGAATACTGTTCACGTCTATTTTGTCGAGA
EY913469       <-- CCTCGCAATCCACCGTTGTTGGAATACTGTTCACGTCTATTTTGCCGAGA
EX770360       <-- CCTCGCAATCCACCGTTGTTGGAATACTGTTCACGTCTATTTTGCCAAGA
EW726792       <-- CCTCGCAATCCACCGTTGTTGGAATACTGTTCACGTCTATTTTGCCAGGA
EY904856       <-- CCTCGTGATCCACCGTTGTTGGAATACTGTTCACGTCTATTTTGCCAAGA
FD949125       <-- CCTCGCAATCCACCGTTGTTGGAATACTGTTCACGTCTATTTTGCCAGGA
EV537346       <-- ..................................................
EY909692       --> tcgc..............................................
EX774566       --> ..................................................
FD547079       --> ..................................................
FD974775       --> ..................................................

               901    -    951
UN08478        --> TCTGATGAAGAAGCGAATGTTTGGTTCCATGGAAATCTAGGGAGATTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ..................................................
FD978552       <-- TCTGATGAAGAAGC-AATGTTTGGGTCCATGGAAATCTAGGGAGATTGTT
EY913469       <-- TCTGATGAAGAAGCGAATGTTTGGGTCCATGGAAATCTAGGGAGATTGTT
EX770360       <-- TCTGATGAAGAAGCGAATGTTTGGTTCCATGGAAATCTAGGGAGATTGTT
EW726792       <-- TCTGATGAAGAAGCGAATGTTTGGTTCCATGGAAATCTAGGGAGATTGTT
EY904856       <-- TCTGATGAGGAAGCGAATGTTTGGTTCCATGGAAATCTAGGGAGATTGTT
FD949125       <-- TCTGATGAAGAAGCGAATGTTTGGTTCCATGGAAATCTAGGGAGATTGTT
EV537346       <-- ..................................................
EY909692       --> ..................................................
EX774566       --> ..................................................
FD547079       --> ..................................................
FD974775       --> ..................................................

               951    -   1001
UN08478        --> GGATATGGACGAGTTAGGATTCTGACGCAGCTGAAGAGGTGTGTGATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ..................................................
FD978552       <-- GGATATGGACGAGTTAGGATTCTGACGCAGCTGAAGAGGTGTGTGATCTT
EY913469       <-- GGATATGGACGAGTTAGGATTCTGACGCAGCTGAAGAGGTGTGTGATCTT
EX770360       <-- GGATATGGACGAGTTAGGATTCTGACGCAGCTGAAGAGGTGTGTGATCTT
EW726792       <-- GGATATGGACGAGTTAGGATTCTGACGCAGCTGAAGAGGTGTGTGATCTT
EY904856       <-- GGATATGGACGAGTTAGGATTCTGACGCAGCTGAAGAGGTGTGTGATCTT
FD949125       <-- GGATATGGACGAGTTAGGATTCTGACGCAGCTGAAGAGGTGTGTGATCTT
EV537346       <-- ..................................................
EY909692       --> ..................................................
EX774566       --> ..................................................
FD547079       --> ..................................................
FD974775       --> ..................................................

               1001   -   1051
UN08478        --> GTGAAAGTCCTAAGCTTAGGCTCAAACCCAGATCTTCTTTTCTCATCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ..................................................
FD978552       <-- GTGAAAGTCCTAAGCTTAGGCTCAAACCCAGATCTTCTTTTCTCATCATC
EY913469       <-- GTGAAAGTCCTAAGCTTAGGCTCAAACCCAGATCTTCTTTTCTCATCATC
EX770360       <-- GTGAAAGTCCTAAGCTTAGGCTCAAACCCAGATCTTCTTTTCTCATCATC
EW726792       <-- GTGAAAGTCCTAAGCTTAGGCTCAAACCCAGATCTTCTTTTCTCATCATC
EY904856       <-- GTGAAAGTCCTAAGCTTAGGCTCAAACCCAGATCTTCTTTTCTCATCATC
FD949125       <-- GTGAAAGTCCTAAGCTTAGGCTCAAACCCAGATCTTCTTTTCTCATCATC
EV537346       <-- ..................................................
EY909692       --> ..................................................
EX774566       --> ..................................................
FD547079       --> ..................................................
FD974775       --> ..................................................

               1051   -   1101
UN08478        --> ATGACTTATTCTATTCTTATGAATCTAGATGAGAACAAAGAACAGAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ..................................................
FD978552       <-- ATGACTTATTCTATTCTTATGAATCTAGATGAGAACAAAGAACAGAGAGA
EY913469       <-- ATGACTTATTCTATTCTTATGAATCTAGATGAGAACAAAGAACAGAGAGA
EX770360       <-- ATGACTTATTCTATTCTTATGAATCTAGATGAGAACAAAGAACAGAGAGA
EW726792       <-- ATGACTTATTCTATTCTTATGAATCTAGATGAGAACAAAGAACAGAGAGA
EY904856       <-- ATGACTTATTCTATTCTTATGAATCTAGATGAGAACAAAGAACAGAGAGA
FD949125       <-- ATGACTTATTCTATTCTTATGAATCTAGATGAGAACAAAGAACAGAGAGA
EV537346       <-- ..............TCTTATGAATCTAGATGAGAACAAAGAACAGAGAGA
EY909692       --> ..................................................
EX774566       --> ..................................................
FD547079       --> ..................................................
FD974775       --> ..................................................

               1101   -   1151
UN08478        --> AGAAGAAAGATACAGATGAGAAATGGTATTTTTCTTTTCCAAAGAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ..................................................
FD978552       <-- AGc...............................................
EY913469       <-- AGAAGAAAGATACAGATGAGAAATGGTATTTTTCTTTTCCAAAGAGAGAG
EX770360       <-- AGAAGAAAGATACAGATGAGAAATGGTATTTTTCTTTTCCAAAGAGAGAG
EW726792       <-- AGAAGAAAGATACAGATGAGAAATGGTATTTTTCTTTTCCAAAGAGAGAG
EY904856       <-- AGAAGAAAGATACAGATGAGAAATGGTATTTTTCCTTTCCAAAGAGAGAG
FD949125       <-- AGAAGAAAGATACAGATGAGAAATGGTATTTTTCTTTTCCAAAGAGAGAG
EV537346       <-- AGAAGAAAGATACAGATGAGAAATGGTATTTTTCTTTTCCAAAGAGCGAG
EY909692       --> ..................................................
EX774566       --> ..................................................
FD547079       --> ..................................................
FD974775       --> ..................................................

               1151   -   1201
UN08478        --> ATCAGGTTTGTTGTGGCGAGTAGTAAGGAGAGAGATGATATGTGAT....
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD551192       <-- ..................................................
FD978552       <-- ..................................................
EY913469       <-- ATCAGGTTTGTTGTGGCGAGTAGTAAG-AGAGAGATGATATGTc......
EX770360       <-- ATCAGGTTTGTTGTGGCGAGTAGTAAGGAGAGAGATGATATGTGATccc.
EW726792       <-- ATCAGGTTTGTTGTGGCGAGTAGTAAGGAGAGAGATGATATGTGATcc..
EY904856       <-- ATCAGGTTTGTTGTGGCGAGTAGccc........................
FD949125       <-- ATCAGGTTTGTTGTGGCGAGTAGTAAGGAGAGAGATGATATGTGATgatc
EV537346       <-- ATCAGGTTTGTTGTGGCGAGTAGCAAGGAGAGAGATGATATGTGATc...
EY909692       --> ..................................................
EX774566       --> ..................................................
FD547079       --> ..................................................
FD974775       --> ..................................................

               1201   -   1251
UN08478        --> .
                   ~
FD551192       <-- .
FD978552       <-- .
EY913469       <-- .
EX770360       <-- .
EW726792       <-- .
EY904856       <-- .
FD949125       <-- c
EV537346       <-- .
EY909692       --> .
EX774566       --> .
FD547079       --> .
FD974775       --> .