1      -     51
UN08552        --> GGAAACTATAATGAAAACTCAAATAAATCTGTAATAATATTAATGTAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- GGAAACTATAATGAAAACTCAAATAAATCTGTAATAATATTAATGTAAAC
FD969861       <-- .....ggtaaaatAAAACTCAAATAAATCTGTAACAATATTAATGTAAAC
FD972276       <-- .......................aAAATCTGTAATAATATTAATGTAAAC
FD983014       --> ......ttTAATGAAAACTCAAATAAATCTGTAATAATATTAATGTAAAC
FD966363       --> .....ggtaaaatAAAACTCAAATAAATCTGTAACAATATTAATGTAAAC
EX752586       --> ...............AACTCAAATAAATCTGTAATAATATTAATGTAAAC

               51     -    101
UN08552        --> AAAGATGTGTTCGGTCGTAGAGTGCCAAAAAGAGAGTAAAGAATTACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- AAAGATGTGTTCGGTCGTAGAGTGCCAAAAAGAGAGTAAAGAATTACATG
FD969861       <-- AAAGATGTGTTCGGTCGTAGAGTGCCAAAAAGAGAGTAAAGAATTACATG
FD972276       <-- AAAGATGTGTTCGGTCGTAGAGTGCCAAAAAGAGAGTAAAGAATTACATG
FD983014       --> AAAGATGTGTTCGGTCGTAGAGTGCCAAAAAGAGAGTAAAGAATTACATG
FD966363       --> AAAGATGTGTTCGGTCGTAGAGTGCCAAAAAGAGAGTAAAGAATTACATG
EX752586       --> AAAGATGTGTTCGGTCGTAGAGTGCCAAAAAGAGAGTGAAGAATTACATG

               101    -    151
UN08552        --> ATAAATCAAATCAAATTATAGTAGAATCATTACAGTGAAACTACCTGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- ATAAATCAAATCAAATTATAGTAGAATCATTACAGTGAAACTACCTGCAG
FD969861       <-- ATAAATAAAATCAAATTATAGTAGAATCATTACAGTGAAACTACCTGCAG
FD972276       <-- ATAAATCAAATCAAATTATAGTAGAATCATTACAGTGAAACTACCTGCAG
FD983014       --> ATAAATCAAATCAAATTATAGTAGAATCATTACAGTGAAACTACCTGCAG
FD966363       --> ATAAATAAAATCAAATTATAGTAGAATCATTACAGTGAAACTACCTGCAG
EX752586       --> ATAAATCAAATCAAATTATAGTAGAATCATTACAGTGAAACTACCTGCAG

               151    -    201
UN08552        --> GATAATAATATAACAATGAACAGAGAAAGAGGAAGTGTGCGTGTGTGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- GATAATAGTATAACAATGAACAGAGAAAGAGGAAGTGTGCGTGTGTGTGT
FD969861       <-- GATAATAATATAACAATGAACAGAGAAAGAGGAAGTGTGCGTGTGTGTGT
FD972276       <-- GATAATAATATAACAATGAACAGAGAAAGAGGAAGTGTGCGTGTGTGTGT
FD983014       --> GATAATAATATAACAATGAACAGAGAAAGGGCAAGTGTGCGTGTGTGTGT
FD966363       --> GATAATAATATAACAATGAACAGAGAAAGAGGAAGTGTGCGTGTGTGTGT
EX752586       --> GATAATAGTATAACAATGAACAGAGAAAGAGGAAGTGTGCGTGTGTGTGT

               201    -    251
UN08552        --> T-AACTAACCAGGCTTTTACGTTCTCTTGTTGGGTTCGAAGACGTATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- T-AACTAACCAGGCTTTTACGTTCTCTTGTTGGGTTCGAAGACGTATTTG
FD969861       <-- TTAACTAACCAGGCTTTTACGTTCTCTTGTTGGGTTCGAAGACGTATTTG
FD972276       <-- T-AACTAACCAGGCTTTTACGTTCTCTTGTTGGGTTCGAAGACGTATTTG
FD983014       --> TTAACTAACCAGGCTTTTACGTTCTCTTGTTGGGTTCGAAGACGTATTTG
FD966363       --> TTAACTAACCAGGCTTTTACGTTCTCTTGTTGGGTTCGAAAACGTATTTG
EX752586       --> T-AACTAACCAGGCTTTTACGTTCTCTTGTTGGGTTCGAAGACGTATTTG

               251    -    301
UN08552        --> ATCAACGAGTCTTTGATGGAAAGCATCTCTGGAAACTCCTTGCTGAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- ATCAACGAGTCTTTGATGGAAAGCAACTCCGGAAACTCCTTGCTGAGCTT
FD969861       <-- ATCAACGAGTCTTTGATGGAAAGCATCTCTGGAAACTCCTTGCTGAGCTT
FD972276       <-- ATCAGCGAGTCTTTGATGGAAAGCAACTCCGGAAACTCCTTGCTGAGCTT
FD983014       --> ATCAACGAGTCTTTGATGGAAAGCATCTCTGGAAACTCCTTGCTGAGCTT
FD966363       --> ATCAACGAGTCTTTGATGGAAAGCATCTCTGGAAACTCCTTGCTGAGCTT
EX752586       --> ATCAACGAGTCTTTGATGGAAAGCAACTCCGGAAACTCCTTGCTGAGCTT

               301    -    351
UN08552        --> AGCACCATCCATCTCGTTGTTGCTTCGTGCCGCGACAATGACCTTAGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- AGCACCATCCATCTCGTTGTTGCTTCGTGCCGCGACAATGACTTTAGCCT  Raphanus raphanistrum subsp. landra
FD969861       <-- AGCACCATCCATCTCGTTGTTGCTCCGTGCCGCGACAATGACCTTAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972276       <-- AGCACCATCCATCTCGTTGTTGCTCCGTGCCc..................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983014       --> AGCACCATCCATCTCGTTGTTGCTTCTTGCCGCGACAATGACCTTAGCCT  Raphanus raphanistrum subsp. landra
FD966363       --> AGCACCATCCATCTCGTTGTTGCTCCGTGCCGCGACAATGACCTTAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX752586       --> AGCACCATCCATCTCGTTGTTGCTTCGTGCCGCGACAATGACCTTAGCCT  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN08552        --> GTTCTTCCAAAGTGAAGTTGGACCATTTGAAACCCGGCTCGATGTAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- c.................................................
FD969861       <-- GTTCTTCCAAAGTGAAGTTGGACCATTTGAAACCCGGCTCGATGTAGCTC
FD972276       <-- ..................................................
FD983014       --> GTTCTTCCAAAGTGAAGTTGGACCATTTGAAACCCGGCTCGATGTAGTTC
FD966363       --> GTTCTTCCAAAGTGAAGTTGGACCATTTGAAACCCGGCTCGATGTAGCTC
EX752586       --> GTTCTTCCAAAGTGAAGTTGGACCATTTGAAACCCGGCTCGATGTAGCTC

               401    -    451
UN08552        --> TTGTACATCTCCAGTATCTCGTTGTGGCTCACCACTCCAGGATTGGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- ..................................................
FD969861       <-- TTGTACATCTCCAGTATCTCGTTGTGGCTCACCACTCCAGGATTGGTGAA
FD972276       <-- ..................................................
FD983014       --> TTGTACATCTCCAGTATCTCGTTGTGGCTCACCACTCCAGGATTGGTGAA
FD966363       --> TTGTACATCTCCAGTATCTCGTTGTGGCTCACCACTCCAGGATTGGTGAA
EX752586       --> TTGTACATCTCCAGTATCTCGTTGTGGCTCACCACTCCAGGATTGGTGAA

               451    -    501
UN08552        --> GTTCCATATCCCCCTCAGGTTCCTCTTCGCCATCTCGATTGAGATTGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- ..................................................
FD969861       <-- GTTCCATATCCCCCTCAGGTTCCTCTTCGCCATCTCGATTGAGATTGGTA
FD972276       <-- ..................................................
FD983014       --> GTTCCATATCCCCCTCAGGTTCCTCT........................
FD966363       --> GTTCCATATCCCCCTCAGGTTCCTC.........................
EX752586       --> GTTCCATATCCCCCTCAGGTTCCTCTTCGCCATCTCGATTGAGATTGGTA

               501    -    551
UN08552        --> AGAGTTCGTCTAGTATGGTCATGCTGTTTGGGATGTTCACCACTTTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- ..................................................
FD969861       <-- AGAGCTCGTCTAGTATGGTCATGCTGTTTGGGATGTTCACCACTTTGTTG
FD972276       <-- ..................................................
FD983014       --> ..................................................
FD966363       --> ..................................................
EX752586       --> AGAGTTCGTCTAGTACGGTCATGCTGTTTGGGATGTTCACCACTTTGTTG

               551    -    601
UN08552        --> TAGCGAGAGATCTTGGTGATGAAGTTTCGTGGGTTGTTCAAGTCGGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- ..................................................
FD969861       <-- TAGCGAGAGATCTTGGTGAc..............................
FD972276       <-- ..................................................
FD983014       --> ..................................................
FD966363       --> ..................................................
EX752586       --> TAGCGAGAGATCTTGGTGATGAAGTTTCGTGGGTTGTTCAAGTCGGATGA

               601    -    651
UN08552        --> GATCGGCATCCTCACTCTCAAGGTGCATACGTTGTCGAATTCTCTTAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- ..................................................
FD969861       <-- ..................................................
FD972276       <-- ..................................................
FD983014       --> ..................................................
FD966363       --> ..................................................
EX752586       --> GATCGGCATCCTCACTCTCAAGGTGCATACGTTGTCGAATTCTCTTAGAA

               651    -    701
UN08552        --> GCCCTTCCACCATTGCCTTTGTTTTTGAGTAGAAGGAACCGAAGAAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- ..................................................
FD969861       <-- ..................................................
FD972276       <-- ..................................................
FD983014       --> ..................................................
FD966363       --> ..................................................
EX752586       --> GCCCTTCCACCATTGCCTTTGTTTTTGAGTAGAAGGAACCGAAGAAGTTC

               701    -    751
UN08552        --> GGTTTGTCTTCTTCCTTAAAACCGATCCCTGAACCTTCTGGATGTACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- ..................................................
FD969861       <-- ..................................................
FD972276       <-- ..................................................
FD983014       --> ..................................................
FD966363       --> ..................................................
EX752586       --> GGTTTGTCTTCTTCCTTAAAACCGATCCCTGAACCTTCTGGATGTACAGC

               751    -    801
UN08552        --> GTCATACTCAAATATACAACCGGTAGCAAAGTTCATCATCAACAGACCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX772882       <-- ..................................................
FD969861       <-- ..................................................
FD972276       <-- ..................................................
FD983014       --> ..................................................
FD966363       --> ..................................................
EX752586       --> GTCATACTCAAATATACAACCGGTAGCAAAGTTCATCATCAACAGACCGT

               801    -    851
UN08552        --> TCTCTCTGCAAACATCTGCC
                   ~~~~~~~~~~~~~~~~~~~~
EX772882       <-- ....................
FD969861       <-- ....................
FD972276       <-- ....................
FD983014       --> ....................
FD966363       --> ....................
EX752586       --> TCTCTCTGCAAACATCTGCC