1      -     51
UN08575        --> GGACACTCGTGGATTTTCACACTTTCAGAGTAATCTCATCGAGCATGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- ..................................................
FD547419       <-- ..................................................
FD554203       <-- ..................................................
FD529045       <-- ..................................................
FD532629       --> GGACACTCGTGGATTTTCAGACTTTCAGAGTAATCTCATCGAGCATGCTA
EY914876       --> ...................CACTTTCAGAGTAATCTCATCGAGCATGATA
FD979838       --> ...................CACTTTCAGAGTAATCTCATCGAGCACGATA
FD571942       --> ........................ggAGAGTAATCTCATCGAGCATGATA
FD986194       --> ..........................................ggATGCTA
FD551547       --> ..................................................

               51     -    101
UN08575        --> CTCCATACGTTATCTCCATCGTCTCCTCCCATTCACCGCCTCTATCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- ..................................................
FD547419       <-- ..................................................
FD554203       <-- ..................................................
FD529045       <-- ..................................................
FD532629       --> CTCCATACGTTATCTCCATCGTCTCCTCCCATTCACCGCCTCTATCTCCA
EY914876       --> CTCCATACGTTATCTCCATCTTCTCCTCCCATTCACCGCCTCTATCTCCA
FD979838       --> CTCCATACGTTATCTCCATCGTCTCCTCCCATTCACCGCCT-TATCTCCA
FD571942       --> CTCCATACGTTATCTCCATCGTCTCCTCCCATTCACCGCCTCTATCTCCA
FD986194       --> CTCCATACGTTATCTCCATCGTCTCCTCCCATTCACCGCCTCTATCTCCA
FD551547       --> ..................................................

               101    -    151
UN08575        --> TCACTCTCAGATTCTCCCTTCTTCTCCCGTATCGCTCAAGCTCCATCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- ..................................................
FD547419       <-- ..................................................
FD554203       <-- ..................................................
FD529045       <-- ..................................................
FD532629       --> TCACTCTCAGATTCTCCCTTCTTCTCCCGTATCGCTCAAGCTCCATCCCA
EY914876       --> TCACTCTCAGATTCTCCCTTCTTCTCCCGTATCGCTCAAGCTCCATCCCA
FD979838       --> TCACTCTCAGATTCTCCCTTCTTCTCCCGTATCGCTCAAGCTCCATCCCA
FD571942       --> TCACTCTCAGATTCTCCCTTCTTCTCCCGTATCGCTCAAGCTCCATCCCA
FD986194       --> TGACTCTCAGATTCTCCCTTCTTCTCCCGTATCGCTCAAGCTCCATCCCA
FD551547       --> .......................................GCTCCATCCCA

               151    -    201
UN08575        --> AAACGATATCTTTACAG----ATACATGGAAGGACTAACGCAGAACTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- ..................................................
FD547419       <-- ..................................................
FD554203       <-- ..................................................
FD529045       <-- ..................................................
FD532629       --> AAACGATATCTTTACAG----ATACATGGAAGGACTAAAGCAGAACTTGC
EY914876       --> AAACGATATCTTTACAG----ATACATGGAAGGACTAACGCAAAACTTGC
FD979838       --> AAACGATATCTTTACAG----ATACATGGAAGGACTAACGCAGAACTTGC
FD571942       --> AAACGATATCTTTACAG----ATACATGGAAGGACTAACGCAGAACTTGC
FD986194       --> AAACGATATCTTTACAGGCAGATACATGGAAGGACTAAAGCAGAACTTGC
FD551547       --> AAACGATATCTTTACAG----ATACATGGAAGGACTAACGCAGAACTTGC

               201    -    251
UN08575        --> TGCTAGAGGGTTACCGGTTTTGAAAAAAGCTTCTTTGAAGAAGCTACCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- .............................CTTCTTTGAAGAAGCTACCGA
FD547419       <-- ..................................................
FD554203       <-- ..................................................
FD529045       <-- ..................................................
FD532629       --> TGCTAGAGGGTTACCGGTTTTGAAAAAAGCTTCTTTGAAGAAGCTACCGA
EY914876       --> TGCTAGAGGGTTACCGGTTTTGAAAAAAGCTTCTTTGAAGAAGCTACCGA
FD979838       --> TTCTAGAGGGTTACCGGTTTTGAAAAAAGCTTCTTTGAAGAAGCTACCGA
FD571942       --> TGCTAGAGGGTTACCGGTTTTGAAAAAAGCTTCTTTGAAGAAGCTACCGA
FD986194       --> TGCTAGAGGGTTACCGGTTTTGAAAAAAGCTTCTTTGAAGAAGCTACCGA
FD551547       --> TGCTAGAGGGTTACCGGTTTTGAAAAAAGCTTCTTTGAAGAAGCTACCGA

               251    -    301
UN08575        --> GCAAAGGATCTACCTTTCTGCTGGGGCATAGCTTGTTGATGGTCTCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- GCAAAGGATCTACCTTTCTGCTGGGGCATAGCTTGTTGATGGTCTCTGCT
FD547419       <-- .................CTGCTGGGGCATAGCTTGTTGATGGTCTCTGCT
FD554203       <-- ..................................................
FD529045       <-- ..................................................
FD532629       --> GCAAAGGATCTACCTTTCTGCTGGGGCGTAGCTTGTTGATAGTCTCTGCT
EY914876       --> GCAAAGGATCTACCTTTCTGCTGGGGCATAGCTTGTTGATGGTCTCTGCT
FD979838       --> GCAAAGGATCTACCTTTCTGCTGGGGCATAGCTTGTTGATGGTCTCTGCT
FD571942       --> GCAAAGGATCTACCTTTCTGCTGGGGCATAGCTTGTTGATGGTCTCTGCT
FD986194       --> GCAAAGGATCTACCTTTCTGCTGGGGCATAGCTTGTTGATGGTCTCTGCT
FD551547       --> GCAAAGGATCTACCTTTCTGCTGGGGCATAGCTTGTTGATGGTCTCTGCT

               301    -    351
UN08575        --> TATCCACAGCTGGCAGCAGCGTCAGAGATCGTGAAGCCTGAGCCTATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- TATCCACAGCTGGCAGCAGCGTCAGAGATCGTGAAGCCTGAGCCTATTTA
FD547419       <-- TATCCACAGCTGGCAGCAGCGTCTGAGATCGTGAAGCCTGAGCCTATTTA
FD554203       <-- .......................AGAGATCGTGAAGCCTGAACCCGTTTA
FD529045       <-- ...............................................TTA
FD532629       --> TATCCACAGCTGGCAGCAGCGTCAGAGATCGTGAAGCCTGAACCTATTTA
EY914876       --> TATCCACAGCTGGCAGCAGCGTCAGAGATCGTGAAGCCTGAGCCTATTT.
FD979838       --> TATCCACAGCTGGCAGCAGCGTCAGAGATCGTGAAGCCTGAGCCTATTTA
FD571942       --> TATCCACAGCTGGCAGCAGCGTCAAAGATCGTGAAGCCTGAGCCTATTTA
FD986194       --> TATCCACAGCTGGCAGCAGCTGCAGAGATCGTGAAGCCTGAACCCGTTTA
FD551547       --> TATCCACAGCTGGCAGCAGCGTCTGAGATCGTGAAGCCTGAGCCTATTTA

               351    -    401
UN08575        --> CGAAGTTGGAGAGTTGTTTGAGCTAGGGATTCAGCTTTCTTACTTGCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- CGAAGTTGGAGAGTTGTTTGAGCTAGGGATTCAGCTTTCTTACTTGCTGT
FD547419       <-- CGAAGTTGGAGAGTTGTTTGAGCTAGGGATTCAGCTTTCTTACTTGCTGT
FD554203       <-- CGAAGTTGGAGAGTTGTTTGAGCTAGGGATTCAGCTTTCTTACTTGCTGT
FD529045       <-- CGAAGTTGGAGAGTTGTTTGAGCTAGGGATTCAGCTTTCTTACTTGCTGT
FD532629       --> CGAAGTTGGAGAGTTGTTTGAGCTAGGGATTCAGCTTTCTTACTTGCTGT
EY914876       --> ..................................................
FD979838       --> CGAAGTTGGAGAGTTGTTTGAGCTAGGGATTCAGCTTTCTTACTTGCTGT
FD571942       --> CGAAGTTGGAGAGTTGTTTGAGCTAAGGATTCAGCTTTCTTACTTGCTGT
FD986194       --> CGAAGTTGGAGAGTTGTTTGAGCTAGGGATTCAGCTTTCTTACTTGCTGT
FD551547       --> CGAAGTTGGAGAGTTGTTTGAGCTAGGGATTCAGCTTTCTTACTTGCTGT

               401    -    451
UN08575        --> TGCTACTGGGTTTGCTCGGAGTTGGTACTTTCTATGTCATTCGCCAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- TGCTACTGGGTTTGCTCGGAGTTGGTACTTTCTATGTCATTCGCCAAGTA
FD547419       <-- TGCTACTGGGTTTGCTCGGAGTTGGTACTTTCTATGTCATTCGCCAAGTA
FD554203       <-- TGTTACTGGGTTTGCTCGGAGTTGGTACTTTCTATGTCATTCGCCAAGTA
FD529045       <-- TGCTACTGGGTTTGCTCGGAGTTGGTACTTTCTATGTCATTCGCCAAGTA
FD532629       --> TGCTACTGGGTTTGCTCGGAGTTGGTACTTTCTATGTCATTCGCCAAGTA
EY914876       --> ..................................................
FD979838       --> TGCTACTGGGTTTGCTCGGAGTTGGTACTTTCTATGTCATTCGCCAAGTA
FD571942       --> TGCTACTGGGTTTGCTCGGAGTTGGTACTTTCTATGTCATTCGCCAAGTA
FD986194       --> TGCTACTGGGTTTGCTCGGAGTTGGTACTTTCTATGTCATTCGCCAAGTA
FD551547       --> TGCTACTGGGTTTGCTCGGAGTTGGTACTTTCTATGTCATTCGCCAAGTA

               451    -    501
UN08575        --> CTTGTCCGCAGAGAACTTGACCTCTCTGCCAAAGAACTACAGGAACAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- CTTGTCCGCAGAGAACTTGACCTCTCTGCCAAAGAACTACAGGAACAAGT
FD547419       <-- CTCGTCCGCGGAGAACTTGACCTCTCTGCCAAAGAACTACAGGAACAAGT
FD554203       <-- CTTGTCTGCAGAGAACTTGACCTCTCTGCCAAAGAACTACAGGAACAAGT
FD529045       <-- CTTGTCCGCAGAGAACTTGACCTCTCTGCCAAAGAACTACAGGAACAAGT
FD532629       --> CTTGTCCGCAGAGAACTTGACCTCTCTGCCAAAGAACTACAGGAACAAGT
EY914876       --> ..................................................
FD979838       --> CTTGTCCGCAGAGAACTTGACCTCTCTGCCAAAGAACTACAGGAACAAGT
FD571942       --> CTTGTCCGCAGAGAACTTGACCTCTCTGCCAAAGAACTACAGGAACAAGT
FD986194       --> CTTGTCCGCAGAGAACTTGACCTCTCTGCCAAAGAACTACAGGAACAAGT
FD551547       --> CTCGTCCGCGGAGAACTTGACCTCTCTGCCAAAGAACTACAGGAACAAGT

               501    -    551
UN08575        --> AAGGAGCGGGGATGCAAGTGCAACAGAGCTCTTTGAGCTCGGTGCAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- AAGGAGCGGGGATGCAAGTGCAACAGAGCTCTTTGAGCTCGGTGCAGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547419       <-- AAGGAGCGGGGATGCAAGTGTAACAGAGCTCTTTGAGCTCGGTGCAGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554203       <-- AAGGAGCGGGGATGCAAGTGCAACAGAGCTCTTTGAGCTCGGTGCGGTGA  Raphanus raphanistrum subsp. landra
FD529045       <-- AAGGAGCGGGGATGCAAGTGCAACAGAGCTCTTTGAGCTCGGTGCGGTGA  Raphanus raphanistrum subsp. maritimus
FD532629       --> AAGGAGCGGGGATGCAAGTGCAACAGAGCTCTTTGAGCTCGGTGCGGTGA  Raphanus raphanistrum subsp. maritimus
EY914876       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979838       --> AAGGAGCGGGGATGCAAGTGCAACAGAGCTCTTTGAGCTCGGTGCAGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571942       --> AAGGAGCGGGGATGCAAGTGCAACAGAGCTCTTTGAGCTCGGTGCAGTGA  Raphanus sativus cv Early Scarlet Globe
FD986194       --> AAGGAGCGGGGATGCAAGTGCAACAGAGCTCTTTGAGCTCGGTGCGGTGA  Raphanus raphanistrum subsp. landra
FD551547       --> AAGGAGCGGGGATGCAAGTGTAACAGAGCTCTTTGAGCTCGGTGCAGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN08575        --> TGCTGAGACGCAAATTTTATCCTGCAGCCAACAAGTTCTTGCTTCAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- TGCTGAGACGCAAATTTTATCCTGCAGCCAACAAGTTCTTGCTTCAAGCC
FD547419       <-- TGCTGAGACGCAAATTTTATCCTGCAGCCAACAAGTTCTTGCTTCAAGCC
FD554203       <-- TGCTGAGACGCAAATTTTATCCTGCAGCCAACAAGTTCTTGCTTCAAGCC
FD529045       <-- TGCTGAGACGCAAATTTTATCCTGCAGCCAACAAGTTCTTGCTTCAAGCC
FD532629       --> TGCTGAGACGCAAATTTTATCCTGCAGCCAACAAGTTCTTGCTTCAAGCC
EY914876       --> ..................................................
FD979838       --> TGCTGAGACGCAAATTTTATCCTGCAGCCAACAAGTTCTTGCTTCAAGCC
FD571942       --> TGCTGAGACGCAAATTTTATCCTGCAGCCAACAAGTTCTTGCTTCAAGCC
FD986194       --> TGCTGAGACGCAAATTTTATCCTGCAGCCAACAAGTTCTTGCTTCAAGCC
FD551547       --> TGCTGAGACGCAAATTTTATCCTGCAGCCAACAAGTTCTTGCTTCAAGCC

               601    -    651
UN08575        --> ATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGGTCTACAACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- ATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGGTCTACAACGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547419       <-- ATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGGTCTACAACGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554203       <-- ATCCAGAAATGGGACGGTGACGATCAAGATCTTGCTCAGGTCTACAACGC  Raphanus raphanistrum subsp. landra
FD529045       <-- ATCCAGAAATGGGACGGTGACGATCAAGATCTTGCTCAGGTCTACAACGC  Raphanus raphanistrum subsp. maritimus
FD532629       --> ATCCAGAAATGGGACGGTGACGATCAAGATCTTGCTCAGGTCTACAACGC  Raphanus raphanistrum subsp. maritimus
EY914876       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979838       --> ATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGGTCTACAACGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571942       --> ATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAG-TCTACAACGC  Raphanus sativus cv Early Scarlet Globe
FD986194       --> ATCCAGAAATGGGACTGTGACGATCAAGATCTTGCTCAGGTCTACAACGC  Raphanus raphanistrum subsp. landra
FD551547       --> ATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGGTCTACAACGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN08575        --> TCTGGGGG-TGAGTTATGTCCGAGAGGACAAACTGGACAAAGGAATCGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- TCTGGGGG-TGAGTTATGTCCGAGAGGACAAACTGGACAAAGGAATCGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547419       <-- TCTGGGGG-TGAGTTATGTCCGAGAGGACAAACTGGACAAAGGAATCGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554203       <-- TCTTGGAG-TGAGTTATGTCCGAGAGGACAAACTGGACAAAGGAATCGCT  Raphanus raphanistrum subsp. landra
FD529045       <-- TCTCGGAG-TGAGTTATGTCCGAGAGGACAAACTGGACAAAGGAATCGCT  Raphanus raphanistrum subsp. maritimus
FD532629       --> TCTCGGAG-TGAGTTATGTCCGAGAGGACAAACTGGACAAAGGAATCGCT  Raphanus raphanistrum subsp. maritimus
EY914876       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979838       --> TCTGGGGGGTGAGTTATGTCCGAGAGGACAAACTGGACAAAG-AATCGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD571942       --> TCT...............................................  Raphanus sativus cv Early Scarlet Globe
FD986194       --> TCTTGGAG-TGAGTTATGTCCGAGAGGACAAACTGGACAAAGGAATCGCT  Raphanus raphanistrum subsp. landra
FD551547       --> TCTGGGGG-TGAGTTATGTCCGAGAGGACAAACTGGACAAAGGAATCGCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN08575        --> CAGTTTGAGATGGCGGTGAAGATTCAGCCTGGTTATGTAACGGCTTGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- CAGTTTGAGATGGCGGTGAAGATTCAGCCTGGTTATGTAACGGCTTGGAA
FD547419       <-- CAGTTTGAGATGGCGGTGAAGATTCAGCCTGGTCATGTAACGGCTTGGAA
FD554203       <-- CAGTTTGAGATGGCGGTGAAGATTCAGCCTGGTTATGTAACGGCTTGGAA
FD529045       <-- CAGTTTGAGATGGCGGTGAAGATTCAGCCTGGTTATGTAACGGCTTGGAA
FD532629       --> CAGTTTGAGATGGC....................................
EY914876       --> ..................................................
FD979838       --> CAGTTTGAGATGGCGGTGAAGAT-CAGCCTGGTTATGTAAC.........
FD571942       --> ..................................................
FD986194       --> CAGTTTGAGATGGCGGTGAAGATTCAGCCTGGTTATGTAACGG.......
FD551547       --> CAGTTTGAGATGGCGGTGAAGATTCAGCCTGGTCATGTAACGGCTTGGAA

               751    -    801
UN08575        --> CAACCTTGGAGATGCTTACGAGAAGAAGAAGGAGCTGCCTTTGGCGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- CAACCTTGGAGATGCTTACGAGAAGAAGAAGGAGCTGCCTTTGGCGTTGA
FD547419       <-- CAACCTTGGAGATGCTTACGAGAAGAAGAAGGAGCTGCCTTTGGCGTTGA
FD554203       <-- CAACCTTGGAGATGCTTATGAGAAGAAGAAGGAGCTGCCTTTGGCGTTGA
FD529045       <-- CAACCTTGGAGATGCTTACGAGAAGAAGAAGGAGCTGCCTTTGGCGTTGA
FD532629       --> ..................................................
EY914876       --> ..................................................
FD979838       --> ..................................................
FD571942       --> ..................................................
FD986194       --> ..................................................
FD551547       --> CAACCTTGGAGATGCTTACGAGAAGAAGAAG-AGCTGCCTTTGGCGTTGA

               801    -    851
UN08575        --> AAGCGTTTGAAGAGGTTTTGTTGTTTGATCCGAACAACAAGGTGGCTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- AAGCGTTTGAAGAGGTTTTGTTGTTTGATCCGAACAACAAGGTGGCTCGG
FD547419       <-- AAGCGTTTGAAGAGGTTTTGTTGTTTGATCCGAACAACAAGGTGGCTCGG
FD554203       <-- AAGCGTTTGAAGAGGTTTTGTTGTTTGATCCGGACAACAAGGTGGCTCGG
FD529045       <-- AAGCGTTTGAAGAGGTTTTGTTGTTTGATCCGAACAACAAGGTGGCTCGG
FD532629       --> ..................................................
EY914876       --> ..................................................
FD979838       --> ..................................................
FD571942       --> ..................................................
FD986194       --> ..................................................
FD551547       --> A-GCGTTTGA........................................

               851    -    901
UN08575        --> CCTCGAAGAGATGCGTTGAAGGATCGCGTTAAGCTCTATAAAGACGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- CCTCGAAGAGATGCGTTGAAGGATCGCGTTAAGCTCTATAAAGACGTTGT
FD547419       <-- CCTCGAAGAGATGCGTTGAAGGATCGCGTTAAGCTCTATAAAGACGTTGT
FD554203       <-- CCTCGAAGAGATGCGTTGAAGGATCGCGTTAAGCTCTATAAAGACGTTGT
FD529045       <-- CCTCGAAGAGATGCGTTGAAGGATCGCGTTAAGCTCTATAAAGACGTTGT
FD532629       --> ..................................................
EY914876       --> ..................................................
FD979838       --> ..................................................
FD571942       --> ..................................................
FD986194       --> ..................................................
FD551547       --> ..................................................

               901    -    951
UN08575        --> GGCGGTTAAGTCCAAGAAACGGTGACGAAGAAACCAATAAACGGTGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- GGCGGTTAAGTCCAAGAAACGGTGACGAAGAAACCAATAAACGGTGTCTC
FD547419       <-- GGCGGTTAAGTCCAAGAAACGGTGACGAAGAAACCAATAAACGGTGTCTC
FD554203       <-- GTCGGTTAAGTCCAAGAAACGGTGACGAAGAAACCAATAAACAATGTCTC
FD529045       <-- GGCGGTTAAGTCCAAGAAACGGTGACGAAGAAACCAATAAACGGTGTCTC
FD532629       --> ..................................................
EY914876       --> ..................................................
FD979838       --> ..................................................
FD571942       --> ..................................................
FD986194       --> ..................................................
FD551547       --> ..................................................

               951    -   1001
UN08575        --> TCTCTTATGTTTA-TTTTGTAAGGACATTTTGTGTTACTCTTAAACAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- TCTCTTATGTTTA-TTTTGTAAGGACATT.....................
FD547419       <-- TCTCTTATGTTTA-TTTTGTAAGGACATTTTGTGTTACTCTTAAACAATA
FD554203       <-- TCTCTTATGTTTAATTTTGTAAGGACGTTTTGTGTTACTCTTAAACAATA
FD529045       <-- TCTCTTATGTTTA-TTTTGTAAGGACATTTTGTGTTACTCTTAAACAATA
FD532629       --> ..................................................
EY914876       --> ..................................................
FD979838       --> ..................................................
FD571942       --> ..................................................
FD986194       --> ..................................................
FD551547       --> ..................................................

               1001   -   1051
UN08575        --> AAATCACTCATCTTATTATTCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~
FD975817       <-- ........................
FD547419       <-- AAATCACTCATCTTATTATTCG..
FD554203       <-- AAATCACTCATCTTATTATTCGAG
FD529045       <-- AAATCACTCATCTTATTATTCag.
FD532629       --> ........................
EY914876       --> ........................
FD979838       --> ........................
FD571942       --> ........................
FD986194       --> ........................
FD551547       --> ........................