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Alignment for radish unigene UN08684

               1      -     51
UN08684        --> GGCAACTGTAAATGTGATTTTTAAATTCTAGTTCAAAAGACGACACTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- ..................................................
EY913270       <-- ..................................................
FD946450       <-- ..................................................
FD939748       <-- ..................................................
EX906021       <-- ..................................................
EV529892       --> GGCAACTGTAAATGTGATTTTTAAATTCTAGTTCAAAAGACGACACTTTT
FD552587       --> .......GTAGATGTGATTTTTAAATTCTAGTTCAAAAGACGACACTTTT
FD942570       --> ..................................................
FD935796       --> ..................................................
EY909530       --> ..................................................
EX909662       --> ..................................................

               51     -    101
UN08684        --> GAATGTATTAGATACAGAGACTATAATAATGGGGGATCGTATAAAAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- ..................................................
EY913270       <-- ..................................................
FD946450       <-- ..................................................
FD939748       <-- ..................................................
EX906021       <-- ..................................................
EV529892       --> GAATGTATTAGATACAGAGACTATAATAATGGGGGATCGTATAAAAAGAG
FD552587       --> GAATGTATTAGATACAGAGACTATAATAATGGGGGATCGTATAAAAAAAG
FD942570       --> .AATGTATTAGATGCAGAGACTATAATAATGGGGGATCGTATAAAAAGAG
FD935796       --> ......................ATAATAATGGGGGATCGTATAAAAAGAG
EY909530       --> ........................gATAATGGGGGATCGTATAAAAAGAG
EX909662       --> ..................................................

               101    -    151
UN08684        --> TAGTGGTTTGGAAGCATGAAAACAGAGATATAAGAAAGCAATTTTGTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- ..................................................
EY913270       <-- ..................................................
FD946450       <-- ..................................................
FD939748       <-- ..................................................
EX906021       <-- ..................................................
EV529892       --> TAGTGGTTTGGAAGCATGAAAACAGAGATATAAGAAAGCAATTTTGTCTA
FD552587       --> TAGTGGTTTGGAAGCATGAAAACAGAGATATAAGAAAGCAATTTTGTCTA
FD942570       --> TAGTGGTTTGGAAGCATGAAAACAGAGATATAAGAAAGCAATTTTGTCTA
FD935796       --> TAGTGGTTTGGAAGCATGAAAACAGAGATATAAGAAAGCAATTTTGTCTA
EY909530       --> TAGTGGTTTGGAAGCATGAAAACAGAAATATAAAAAAGCAATTTTGTCTA
EX909662       --> .........GGAAGCATGAAAACAGAGATATAAGAAAGCAATTTTGTCTA

               151    -    201
UN08684        --> TATCTTCCCAAGCAAAATATTAAAACTCTTTCGTCTCTGAGATAAACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- ..................................................
EY913270       <-- ..................................................
FD946450       <-- ..................................................
FD939748       <-- ..................................................
EX906021       <-- ..................................................
EV529892       --> TATCTTCCCAAGCAAAATATTAAAACTCTTTCGTCTCTGAGATAAACCAA
FD552587       --> TATCTTCCCAAGCAAAATATTAAAACTCTTTCGTCTCTGAAATAAACCAA
FD942570       --> TATCTTCCCAACCAAAATATTAAAACTCTTTCGTCTCTGAGATAAACCAA
FD935796       --> TATCTTCCCAAGCAAAATATTAAAACTCTTTCGTCTCTGAAATAAACCAA
EY909530       --> TATCTTCCCAAGCAAAATATTAAAACTCTTTCGTCTCTGAAATAAACCAA
EX909662       --> TATCTTCCCAAGCAAAATATTAAAACTCTTTCGTCTCTGAGATAAACCAA

               201    -    251
UN08684        --> TTACAGGGTGATTGACTGATTGCAGAGTTCTCGGTTAATGTCTTTCACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- ........................GAGTTCTCGGTTAATGTCTTTCACCA
EY913270       <-- ..................................................
FD946450       <-- ..................................................
FD939748       <-- ..................................................
EX906021       <-- ..................................................
EV529892       --> TTACAGGGTGATTGACTGATAGCAGAGTTCTCGGTTAATGTCTTTCACCA
FD552587       --> TTACAGGGTGATTGACTGATTGCAGAGTTCTCGGTTAATGTCTTTCACCA
FD942570       --> TTACAGGGTGATTGACTGATTGCAGAGTTCTCGGTTAATGTCTTTCACCA
FD935796       --> TTACAGGGTGATTGACTGATTGCAGAGTTCTCGGTTAATGTCTTTCACCA
EY909530       --> TTACAGGGTGATTGACCGATTGCAGAGTTCTCGGTTAATGTCTTTCACCA
EX909662       --> TTACAGGGTGATTGACTGATTGCAGAGTTCTCGGTTAATGTCTTTCACCA

               251    -    301
UN08684        --> ACATGCACGGACCTCAGAATTTATGGTACAACGGCCTCAAGAAGCTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- ACATGCACGGACCTCAGAGTTTATGGTGCAACGGCCTCAAGAAGCTTCTC
EY913270       <-- ..................................................
FD946450       <-- ..................................................
FD939748       <-- ..................................................
EX906021       <-- ..................................................
EV529892       --> ACATGCACGGACCTCAAAATTTATGGTACAACGGCCTCAAGAAGCTTCTC
FD552587       --> ACATGCACGGACCTCAGAGTTTATGGTGCAACGGCCTCAAGAAGCTTCTC
FD942570       --> ACATGCACGGACCTCAGAATTTATGGTACAACGGCCTCAAGAAGCTTCTC
FD935796       --> ACATGCACGGACCTCAGAATTTATGGTACAACGGCCTCAAGAAGCTTCTC
EY909530       --> ACATGCACGGACCTCAAAGTTTATGGTGCGACGGCCTCAAAAAGCTTCTC
EX909662       --> ACATGCACGGACCTCAGAATTTATGGTACAACGGCCTCAAGAAGCTTCTC

               301    -    351
UN08684        --> ATACACCTGTCTGGCAGATAAATCCTCGACCACGAGGAGTTTCGATTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- ATACACCTGTCTGGCAGATAAATCCTCGACCACGAGGAGTTTCGATTTGC
EY913270       <-- ...........................GACCACGAGGAGTTTCGATTTGC
FD946450       <-- ..................................................
FD939748       <-- ..................................................
EX906021       <-- ..................................................
EV529892       --> ATACACCTGTCTGGCAGATAAATCCTCGACCACGAGGAGTTTCGATTTGC
FD552587       --> ATACACCTGTCTGGCAGATAAATCCTCGACCACGAGGAGTTTCGATTTGC
FD942570       --> ATACACCTGTCTGGCAGATAAATCCTCGACCACGAGGAGTTTCGATTTGC
FD935796       --> ATACACCTGTCTGGCAGATAAATCCTCGACCACGAGGAGTTTCGATTTGC
EY909530       --> ATACACCTGTCTGGCAAATAAATCCTCGACCACGAGGAGTTTCGATTTGC
EX909662       --> ATACACCTGTCTGGCAGATAAATCCTCGACCACGAGGAGTTTCGATTTGC

               351    -    401
UN08684        --> TATTCCAGCCTCTTTGGAGAGTCATCTGGCTCAACCTTAAACCAAGTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- TATTCCAGCCTCTTTGGAGAGTCATCTGGCTCAACCTTAAACCAAGCACC  Raphanus raphanistrum subsp. landra
EY913270       <-- TATTCCAGCCTCTTTGGAGAGTCATCTGGCTCAACCTTAAACCAAGCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946450       <-- ................GAGAGTCATCTGGCTCAAC-TTAAACCAAGTACC  Raphanus sativus cv Early Scarlet Globe
FD939748       <-- ..................GAGTCATCTGGCTCAACCTTAAACCAAGTACC  Raphanus sativus var. oleiformis
EX906021       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV529892       --> TATTCCAGCCTCTTTGGAGAGTCATCTGGCTCAACCTTAAACCAAGTACC  Raphanus raphanistrum subsp. maritimus
FD552587       --> TATTCCAGCCTCTTTGGAGAGTCATCTGGCTCAACCTTAAACCAAGCACC  Raphanus raphanistrum subsp. landra
FD942570       --> TATTCCAGCCTCTTTGGAGAGTCATCTGGCTCAACCTTAAACCAAGTACC  Raphanus sativus cv Early Scarlet Globe
FD935796       --> TATTCCAGCCTCTTTGGAGAGTCATCTGGCTCAACCTTAAACCAAGTACC  Raphanus sativus var. oleiformis
EY909530       --> TATTCCAGCCTCTTTGGAGAGTCATCTGGCTCAACCTTAAACCAAGCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX909662       --> TATTCCAGCCTCTTTGGAGAGTCATCTGGCTCAACCATAAACCAAGTACC  Raphanus sativus cv Rat-Tail Radish #3870

               401    -    451
UN08684        --> CTTCCCATGAATTCCAGAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- CTTCCCATGAATTCCAGAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG
EY913270       <-- CTTCCCATGAATTCCAGAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG
FD946450       <-- -TTCCCATGAAT-CCAGAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG
FD939748       <-- CTTCCCATGAATTCCAGAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG
EX906021       <-- ....CCATGAATTCCAGAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG
EV529892       --> CTTCCCATGAATTCCAGAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG
FD552587       --> CTTCCCATGAATTCCAGAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG
FD942570       --> CTTCCCATGAATTCCAGAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG
FD935796       --> CTTCCCATGAATTCCAGAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG
EY909530       --> CTTCCCATGAATTCCAAAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG
EX909662       --> CTTCCCATGAATTCCAGAAGCTCGTTGTTAGCTTCCCCACGAGCTGCTGG

               451    -    501
UN08684        --> TGCGGCAATAGTAACACGAACATCATCAGCGTTTACTCTCGTGATTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- TGCGGCAATAGTAACACGAACATCATCAGCGTTTACTCTCGTGATTGCTG
EY913270       <-- TGCGGCAATAGTAACACGAACATCATCAGCGTTTACTCTCGTGATTGCTG
FD946450       <-- TGCGGCAATAGTAACACGAACATCATCAGCGTTTACTCTCGTGATTGCTG
FD939748       <-- TGCGGCAATAGTAACACGAACAACATCAGCGTTTACTCTCGTGATTGCTG
EX906021       <-- TGCGGCAATAGTAACACGAACATCATCAGCGTTTACTCTCGTGATTGCTG
EV529892       --> TGCGGCAATAGTAACACGAACATCATCAGCGTTTACTCTCGTGATTGCTG
FD552587       --> TGCGGCAATAGTAACACGAACATCATCAGCGTTTACTCTCGTGATTGCTG
FD942570       --> TGCGGCAATAGTAACACGAACATCATCAGCGTTTACTCTCGTGATTGCTG
FD935796       --> TGCGGCAATAGTAACACGAACAACATCAGCGTTTACTCTCGTGATTGCTG
EY909530       --> TGCGGCAATAGTAACACGAACATCATCAGCGTTTACTCTCGTGATTGCTG
EX909662       --> TGCGGCAATAGTAACACGAACATCATCAGCGTTTACTCTCGTGATTGCTG

               501    -    551
UN08684        --> AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGCCCACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGCCCACCG
EY913270       <-- AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGCCCACCG
FD946450       <-- AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGCCCACCG
FD939748       <-- AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGTCCACCG
EX906021       <-- AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGCCCACCG
EV529892       --> AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGTCCACCG
FD552587       --> AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGCCCACCG
FD942570       --> AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGCCCACCG
FD935796       --> AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGTCCACCG
EY909530       --> AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGCCCACCG
EX909662       --> AACGTTGCGCACGGTCTTCCACTTCTATAGCAACCTGAACAAGCCCACCG

               551    -    601
UN08684        --> TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCATCCTGTGGGTTAGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCATCCTGTGGGTTAGTTTC
EY913270       <-- TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCGTCCTGTGGGTTAGTTTC
FD946450       <-- TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCATCCTGTGGGTTAGTTTC
FD939748       <-- TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCATCCTGTGGGTTAGTTTC
EX906021       <-- TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCATCCTGTGGGTTAGTTTC
EV529892       --> TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCATCCTGTGGGTTAGTTTC
FD552587       --> TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCATCCTGTGGGTTAGTTTC
FD942570       --> TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCATCCTGTGGGTTAGTTTC
FD935796       --> TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCATCCTGTGGGTTAGTTTC
EY909530       --> TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCGTCCTGTGGGTTAGTTTC
EX909662       --> TCGAGCTGTGAAATGCAGGGAGGTACCGGTGCATCCTGTGGGTTAGTTTC

               601    -    651
UN08684        --> TGCAGCAACAGCGCTAAGTGCACCATCAACAATGTAAACGAAGGAGGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- TGCAGCAACAGCGCTAAGTGCACCATCAACAATGTAAATGAAGGAGGCTG  Raphanus raphanistrum subsp. landra
EY913270       <-- AGCAGCAACAGCGCTAAGTGCACCATCAACAATGTAAATGAAGGAGGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946450       <-- TGCAGCAACAGTGCTAAGTGCACCATCAACAATGTAAACGAAGGAGGCTG  Raphanus sativus cv Early Scarlet Globe
FD939748       <-- TGCAGCAACAGCGCTAAGTGCACCATCAACAATGTAAACGAAGGAGGCTG  Raphanus sativus var. oleiformis
EX906021       <-- TGCAGCAACAGCGCTAAGTGCACCATCAACAATGTAAACGAAGGAGGCTG  Raphanus sativus cv Rat-Tail Radish #3870
EV529892       --> TGCAGCAACAGCGCTAAGTGCACCATCAACAATGTAAACGAAGGAGGCTG  Raphanus raphanistrum subsp. maritimus
FD552587       --> TGCAGCAACAGCGCTAAGTGCACCATCAACAATGTAAATGAAGGAGGCTG  Raphanus raphanistrum subsp. landra
FD942570       --> TGCAGCAACAGTGCTAAGTGCACCATCAACAATGTAAACGAAGGAGGCTG  Raphanus sativus cv Early Scarlet Globe
FD935796       --> TGCAGCAACAGCGCTAAGTGCACCATCAACAATGTAAACGAAGGAGGCTG  Raphanus sativus var. oleiformis
EY909530       --> AGCAGCAACAGCGCTAAGTGCACCATCAACAATGTAAATGAAGGAGGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX909662       --> TGCAGCAACAGCGCTAAGTGCACCATCAACAATGTAAACGAAGGAGGCTG  Raphanus sativus cv Rat-Tail Radish #3870

               651    -    701
UN08684        --> TTTCCAGAGACTCTTCAGCGCGATAACAAACAAAAAGCTCACAACCAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- TTTCCAGACTCTCTTCAGCGCGATAACAAACAAAAAGCTCACAACCAATA  Raphanus raphanistrum subsp. landra
EY913270       <-- TTTCCAGACTCTCTTCAGCGCGATAACAAACAAAAAGCTCACAACCAATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946450       <-- TTTCCAGAGACTCTTCAGCGCGATAACAAACAAAAAGCTCACAACCAATA  Raphanus sativus cv Early Scarlet Globe
FD939748       <-- TTTCCAGAGACTCTTCAGCGCGATAACAAACAAAAAGCTCACAACCAATA  Raphanus sativus var. oleiformis
EX906021       <-- TTTCCAGAGACTCTTCAGCGCGATAACAAACAAAAAGCTCACAACCAATA  Raphanus sativus cv Rat-Tail Radish #3870
EV529892       --> TTTCCAGACTCTCTTCAGCGCGATAACAAAC...................  Raphanus raphanistrum subsp. maritimus
FD552587       --> TTTCCAGACTCTCTTCAGCGCGATAACAAACAAAAAGCTCACAACCAATA  Raphanus raphanistrum subsp. landra
FD942570       --> TTTCCAGAGACTCTTCAGCGCGATAACAAACAAAAAGCTCACAACCAATA  Raphanus sativus cv Early Scarlet Globe
FD935796       --> TTTCCAGAGACTCT....................................  Raphanus sativus var. oleiformis
EY909530       --> TTTCCAGACTCTCTT...................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX909662       --> TTTCCAGAGACTCTTCAGCGCGATAACAAACAAAAAGCTCACAACCAATA  Raphanus sativus cv Rat-Tail Radish #3870

               701    -    751
UN08684        --> CAGTTCATTCTAAACTGCCTCTCCAGTTTCCCTTCGCCGCGTTTTAGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- CAGTTCATTCTAAACTGTCTCTCCAGTTTCCCTTCCCCGCGTTTTAATAA  Raphanus raphanistrum subsp. landra
EY913270       <-- CAGTTCATTCTAAACTGTCTCTCCAGTTTCCCTTCCCCGCGTTTTAATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946450       <-- CAGTTCATTCTAAACTGCCTCTCCAGTTTCCCTTCGCCGCGTTTTAGTAA  Raphanus sativus cv Early Scarlet Globe
FD939748       <-- CAGTTCATTCTAAACTGCCTCTCCAGTTTCCCTTCGCCGCGTTTTAGTAA  Raphanus sativus var. oleiformis
EX906021       <-- CAGTTCATTCTAAACTGCCTCTCCAGTTTCCCTTCGCCGCGTTTTAGTAA  Raphanus sativus cv Rat-Tail Radish #3870
EV529892       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD552587       --> CAGTTCATTCTAAACTGTCTCTCCAGTTTCCCTTCCCCGCGTTT......  Raphanus raphanistrum subsp. landra
FD942570       --> CAGTTCATTCTAAACTGCCTCTCCAGTTTCCCTTCGCCGCGTTTTAGTAA  Raphanus sativus cv Early Scarlet Globe
FD935796       --> ..................................................  Raphanus sativus var. oleiformis
EY909530       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX909662       --> CAGTTCATTCTAAACTGCCTCTCCAGTTTCCCTTCGCCGCGTTTTAGTAA  Raphanus sativus cv Rat-Tail Radish #3870

               751    -    801
UN08684        --> AACTTTCCCTCCCTCGCTGACATTTAACCTAGCAAGGTGCTTCTTCTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- AACTTTGCCTCCCTCACTGACATTCAACCTAGCAAGGTGCTTCTTCTTGT
EY913270       <-- AACTTTGCCTCCCTCGCTGACATTCAACCTAGCAAGGTGCTTCTTCTTGT
FD946450       <-- AACTTTCCCTCCCTCGCTGACATTTAACCTAGCAAGGTGCTTCTTCTTGT
FD939748       <-- AACTTTCCCTCCCTCGCTGACATTTAACCTAGCAAGGTGCTTCTTCTTGT
EX906021       <-- AACTTTCCCTCCCTCGCTGACATTTAACCTAGCAAGGTGCTTCTTCTTGT
EV529892       --> ..................................................
FD552587       --> ..................................................
FD942570       --> AACTTTCCCTCCCTCGCTGACATTTAACCTAGCAAGGTGCTTCTTCTTGT
FD935796       --> ..................................................
EY909530       --> ..................................................
EX909662       --> AACTTTCCCTCCCTCGCTGACATTTAACCTAGCAAGGTGCTTCTTCTTGT

               801    -    851
UN08684        --> CCAGCACACTGGATCTGTCGGTCTTCCTCTTCGGCATCTTCTGCAATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- CCAGCACACTc.......................................
EY913270       <-- CCAGCACACTGGATCTGTCGGTCTTCCTCTTTGGCATCTTCTGCAATTGA
FD946450       <-- CCAGCACACTGGATCTGTCGGTCTTCCTCTTCGGCATCTTCTGCAATTGA
FD939748       <-- CCAGCACACTGGATCTGTCGGTCTTCCTCTTCGGCATCTTCTGCAATTGA
EX906021       <-- CCAGCACACTGGATCTGTCGGTCTTCCTCTTCGGCATCTTCTGCAATTGA
EV529892       --> ..................................................
FD552587       --> ..................................................
FD942570       --> CCAGCACACTGGATCTGTCGGTCTT.........................
FD935796       --> ..................................................
EY909530       --> ..................................................
EX909662       --> CCAGCACA..........................................

               851    -    901
UN08684        --> GTATCAGTGATGAGGACATGAGAACCACAGTGCTTGCAGTAGTACACGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- ..................................................
EY913270       <-- GTATCAGTGATGAGGACATGAGAACCACAGTGCTTGCAGTAGTAAACGAA
FD946450       <-- GTATCAGTGATGAGGACATGAGAACCACAGTGCTTGCAGTAGTAGACGAA
FD939748       <-- GTATCAGTGATGAGGACATGAGAACCACAGTGCTTGCAGTAGTACACGAA
EX906021       <-- GTATCAGTAATGAGGACATGAGAACCACAGTGCTTGCAGTAGTACACGAA
EV529892       --> ..................................................
FD552587       --> ..................................................
FD942570       --> ..................................................
FD935796       --> ..................................................
EY909530       --> ..................................................
EX909662       --> ..................................................

               901    -    951
UN08684        --> GAGATCGGAGTCGGGTCCTTCCGGCGCCGCGTCCTCGCTCGAGTACGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- ..................................................
EY913270       <-- GAGATCGGAGTCGGGTCCTTCCGGCGCCGCGTCCTCGCTCGAGTACGTAT
FD946450       <-- GAGATCGGAGTCGGGTCCTTCCGGCGCCGCGTCCTCGCTCGAGTACGTAT
FD939748       <-- GAGATCGGAGTCGGGTCCTTCCGGCGCCGCGTCCTCGCTCGAGTACGTAT
EX906021       <-- GAGATCGGAGTCGGGTCCTTCCGGCGCCGCGTCCTCGCTCGAGTACGTAT
EV529892       --> ..................................................
FD552587       --> ..................................................
FD942570       --> ..................................................
FD935796       --> ..................................................
EY909530       --> ..................................................
EX909662       --> ..................................................

               951    -   1001
UN08684        --> GCGTCGTTCTCTTCGGCATCTCTCGTCGAATCGAAGAAACTCTCTCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- ..................................................
EY913270       <-- GCGTCGTTCTCTTCGGCATCTCTCGTCGAATCGAAGAAACTCcc......
FD946450       <-- GCGTCGTTCTCTTCGGCATCTCTCGTCGAATCGAAGAAACTCTCTCTCTC
FD939748       <-- GCGTCGTTCTCTTCGGCATCTCTCGTCGAA....................
EX906021       <-- GCGTCGTTCTCTTCGGCATCTCTCGTCGAATCGAAGAAACTCTCTCTCTC
EV529892       --> ..................................................
FD552587       --> ..................................................
FD942570       --> ..................................................
FD935796       --> ..................................................
EY909530       --> ..................................................
EX909662       --> ..................................................

               1001   -   1051
UN08684        --> TCTCTCTCCTCACTGTAATAACTTCTTCACGGTGGTGCACGGATCCGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD556247       <-- ..................................................
EY913270       <-- ..................................................
FD946450       <-- TCTCTCTCCTCACTGTAATAACTTCTTCACGGTGGTGCACGGATCCGGCG
FD939748       <-- ..................................................
EX906021       <-- TCTCTCTC..........................................
EV529892       --> ..................................................
FD552587       --> ..................................................
FD942570       --> ..................................................
FD935796       --> ..................................................
EY909530       --> ..................................................
EX909662       --> ..................................................

               1051   -   1101
UN08684        --> GATTCC
                   ~~~~~~
FD556247       <-- ......
EY913270       <-- ......
FD946450       <-- GATTCC
FD939748       <-- ......
EX906021       <-- ......
EV529892       --> ......
FD552587       --> ......
FD942570       --> ......
FD935796       --> ......
EY909530       --> ......
EX909662       --> ......