Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN08722

               1      -     51
UN08722        --> AGAACTCAGACTGCCTTATACTATATTGGTCCAAACCTGATGCAAAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- ..................................................
EX769940       <-- ..................................................
EX774180       --> AGAACTCAGACTGCCTTATACTATATTGGTCCAAACCTGATGCAAAGACA
EX776565       --> ............GCCTTATACTATATTGGTCCAAACCTGATGCAAAGACA
EX769232       --> ..................................................
EW718563       --> ..................................................
EW718826       --> ..................................................

               51     -    101
UN08722        --> ATCATACAACACATAGCATTTTCAAAAACCTTAAAACCCAAAATCAGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- ..................................................
EX769940       <-- ..................................................
EX774180       --> ATCATACAACACATAGCATTTTCAAAAACCTTAAAACCCAAAATCAGATT
EX776565       --> ATCATACAACACATAGCATTTTCAAAAACCTTAAAACCCAAAATCAGATT
EX769232       --> .....................cggAAAACCTTAAAACCCAAAATCAGATT
EW718563       --> ..................................................
EW718826       --> ..................................................

               101    -    151
UN08722        --> CACACTGATCAAGAAGAGAGACATTGGTTCTAAAGATAGAAGCATTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ......gcTCAAGAAGAGAGACATTGGTTCTAAAGATAGAAGCATTAGAG
EW714071       <-- ......gcTCAAGAAGAGAGACATTGGTTCTAAAGATAGAAGCATTAGAG
EX772666       <-- ..................................................
EX769940       <-- ..................................................
EX774180       --> CACACTGATCAAGAAGAGAGACATTGGTTCTAAAGATAGAAGCATTAGAG
EX776565       --> CACACTGATCAAGAAGAGAGACATTGGTTCTAAAGATAGAAGCATTAGAG
EX769232       --> CACACTGATCAAGAAGAGAGACATTGGTTCTAAAGATAGAAGCATTAGAG
EW718563       --> ......gcTCAAGAAGAGAGACATTGGTTCTAAAGATAGAAGCATTAGAG
EW718826       --> ......gcTCAAGAAGAGAGACATTGGTTCTAAAGATAGAAGCATTAGAG

               151    -    201
UN08722        --> AGCCACTTTTTGAAACTTTCAGACAAATAGTTTTAAACAGTACATACAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- AGCCACTTTTTGAAACTTTCAGACAAATAGTTTTAAACAGTACATACAGG  Raphanus sativus var. oleiformis
EW714071       <-- AGCCACTTTTTGAAACTTTCAGACAAATAGTTTTAAACAGTACATACAGG  Raphanus sativus var. oleiformis
EX772666       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX769940       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX774180       --> AGCCACTTTTTGAAACTTTCAGACAAATAGTTTTAAACAGTACATACAAG  Raphanus raphanistrum subsp. landra
EX776565       --> AGCCACTTTTTGAAACTTTCAGACAAATAGTTTTAAACAGTACATACAAG  Raphanus raphanistrum subsp. landra
EX769232       --> AGCCACTTTTTGAAACTTTCAGACAAATAGTTTTAAACAGTACATACAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW718563       --> AGCCACTTTTTGAAACTTTCAGACAAATAGTTTTAAACAGTACATACAGG  Raphanus sativus var. oleiformis
EW718826       --> AGCCACTTTTTGAAACTTTCAGACAAATAGTTTTAAACAGTACATACAGG  Raphanus sativus var. oleiformis

               201    -    251
UN08722        --> AAGAAGAAGAGTTGAAACAAGTCTTAATAGTTACTACTCCTGCCCAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- AAGAAGAAGAGTTGAAACAAGTCTTAATAGTTACTACTCCTGCCCAAAGC
EW714071       <-- AAGAAGAAGAGTTGAAACAAGTCTTAATAGTTACTACTCCTGCCCAAAGC
EX772666       <-- ..................................................
EX769940       <-- ..................................................
EX774180       --> AAGAAGAAGAGTTGAAATAAGTCTTAATAGTTACTACTCCTGCCCAAAGC
EX776565       --> AAGAAGAAGAGTTGAAATAAGTCTTAATAGTTACTACTCCTGCCCAAAGC
EX769232       --> AAGAAGAAGAGTTGAAACAAGTCTTAATAGTTACTACTCCTGCCCAAAGC
EW718563       --> AAGAAGAAGAGTTGAAACAAGTCTTAATAGTTACTACTCCTGCCCAAAGC
EW718826       --> AAGAAGAAGAGTTGAAACAAGTCTTAATAGTTACTACTCCTGCCCAAAGC

               251    -    301
UN08722        --> CATCACGGTTGTCTTGTTGCCACCCGAAACCTTGAGCGTCTCTACCCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- CATCACGGTTGTCTTGTTGCCACCCGAAACCTTGAGCGTCTCTACCCCGG
EW714071       <-- CATCACGGTTGTCTTGTTGCCACCCGAAACCTTGAGCGTCTCTACCCCGG
EX772666       <-- ..................................................
EX769940       <-- ..................................................
EX774180       --> CATCACGGTTGTCTTGTTGCCACCCGAAACCTTGAGCGTCTCTACCCCGG
EX776565       --> CATCACGGTTGTCTTGTTGCCACCCGAAACCTTGAGCGTCTCTACCCCGG
EX769232       --> CATCACGGTTGTCTTGTTGCCACCCGAAACCTTGAGCGTCTCTACCCCGG
EW718563       --> CATCACGGTTGTCTTGTTGCCACCCGAAACCTTGAGCGTCTCTACCCCGG
EW718826       --> CATCACGGTTGTCTTGTTGCCACCCGAAACCTTGAGCGTCTCTACCCCGG

               301    -    351
UN08722        --> TTAACCTGTTGAGGCGGTTCCATACCAGGATTCCACGAGGACTGAGGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- TTAACCTGTTGAGGCGGTTCCATACCAGGATTCCACGAGGACTGAGGATG
EW714071       <-- TTAACCTGTTGAGGCGGTTCCATACCAGGATTCCACGAGGACTGAGGATG
EX772666       <-- ....................CATACCAG-ATTCCACGAGGACTGAGGATG
EX769940       <-- ................................................TG
EX774180       --> TTAACCTGTTGAGGCGGTTCCATACCAGGATTCCACGAGGACTGAGGATG
EX776565       --> TTAACCTGTTGAGGCGGTTCCATACCAGGATTCCACGAGGACTGAGGATG
EX769232       --> TTAACCTGTTGAGGCGGTTCCATACCAGGATTCCACGAGGACTGAGGATG
EW718563       --> TTAACCTGTTGAGGCGGTTCCATACCAGGATTCCACGAGGACTGAGGATG
EW718826       --> TTAACCTGTTGAGGCGGTTCCATACCAGGATTCCACGAGGACTGAGGATG

               351    -    401
UN08722        --> ATAAGATCCTTGGAAACTCAGATTCATCGTTGGCGCAGGCTGCTGCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ATAAGATCCTTGGAAACTCAGATTCATCGTTGGCGCAGGCTGCTGCTGCT  Raphanus sativus var. oleiformis
EW714071       <-- ATAAGATCCTTGGAAACTCAGATTCATCGTTGGCGCAGGCTGCTGCTGCT  Raphanus sativus var. oleiformis
EX772666       <-- ATA-GATCCTTGGAA-CTCAGATTCATCGTTG-CGCAGGCTGCTGCTGCT  Raphanus raphanistrum subsp. landra
EX769940       <-- ATAAGATC-TTGGAAACTCAGATTCATCGTTGGCGCAGGCTGCTGCTGCT  Raphanus raphanistrum subsp. landra
EX774180       --> ATAAGATCCTTGGAAACTCAGATTCATCGTTGGCGCAGGCTGCTGCTGCT  Raphanus raphanistrum subsp. landra
EX776565       --> ATAAGATCCTTGGAAACTCAGATTCATCGTTGGCGCAGGCTGCTGCTGCT  Raphanus raphanistrum subsp. landra
EX769232       --> ATAAGATCCTTGGAAACTCAGATTCATCGTTGGCGCAGGCTGCTGCTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW718563       --> ATAAGATCCTTGGAAACTCAGATTCATCGTTGGCGCAGGCTGCTGCTGCT  Raphanus sativus var. oleiformis
EW718826       --> ATAAGATCCTTGGAAACTCAGATTCATCGTTGGCGCAGGCTGCTGCTGCT  Raphanus sativus var. oleiformis

               401    -    451
UN08722        --> GCTGCTGATACCCGAGCACATAACCTTGTTATGTCTTCAGGTCTTGTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- GCTGCTGATACCCGAGCGCAGAACCTTGTTCTGTCTTCAGGTCTTGTCAT  Raphanus sativus var. oleiformis
EW714071       <-- GCTGCTGATACCCGAGCGCAGAACCTTGTTCTGTCTTCAGGTCTTGTCAT  Raphanus sativus var. oleiformis
EX772666       <-- -CTGCTGATACCCGAGCACATA-CCTTGTTATGTCTTCAGGTCTTGTCAT  Raphanus raphanistrum subsp. landra
EX769940       <-- -CTGCTGATACCCGAGCACATA-CCTTGTTATGTCTTCAGGTCTTGTCAT  Raphanus raphanistrum subsp. landra
EX774180       --> CCTGCTGATACCCGAGCACATAACCTTGTTATGTCTTCAGGTCTTGTCAT  Raphanus raphanistrum subsp. landra
EX776565       --> CCTGCTGATACCCGAGCACATAACCTTGTTATGTCTTCAGGTCTTGTCAT  Raphanus raphanistrum subsp. landra
EX769232       --> CCTGCTGATACCCGAGCACATAACCTTGTTATGTCTTCAGGTCTTGTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW718563       --> GCTGCTGATACCCGAGCGCAGAACCTTGTTCTGTCTTCAGGTCTTGTCAT  Raphanus sativus var. oleiformis
EW718826       --> GCTGCTGATACCCGAGCGCAGAACCTTGTTCTGTCTTCAGGTCTTGTCAT  Raphanus sativus var. oleiformis

               451    -    501
UN08722        --> CTCAAAAGGTGCACCATTGTAGAATTGCTGAGACGATCCATCAGTTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- CTCAAAAGGTGCACCATTGTAGAATTGCTcccc.................  Raphanus sativus var. oleiformis
EW714071       <-- CTCAAAAGGTGCACCATTGTAGAATTGCTcccc.................  Raphanus sativus var. oleiformis
EX772666       <-- CTCAAAAGGTGCACCGTTGTAGAATTGCTGAGACGATCCATCAGTTGTTG  Raphanus raphanistrum subsp. landra
EX769940       <-- CTCAAAAGGTGCACCGTTGTAGAAT-GCTGAGACGATCCATCAGTTGTTG  Raphanus raphanistrum subsp. landra
EX774180       --> CTCAAAAGGTGCACCGTTGTAGAATTGCTGAGACGATCCATCAGTTGTTG  Raphanus raphanistrum subsp. landra
EX776565       --> CTCAAAAGGTGCACCGTTGTAGAATTGCTGAGACGATCCATCAGTTGTTG  Raphanus raphanistrum subsp. landra
EX769232       --> CTCAAAAGGTGCACCATTGTAGAATTGCTGAGACGATCCATCAGTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW718563       --> CTCAAAAGGTGCACCATTGTAGAATTGCTc....................  Raphanus sativus var. oleiformis
EW718826       --> CTCAAAAGGTGCACCATTGTAGAATTGCTc....................  Raphanus sativus var. oleiformis

               501    -    551
UN08722        --> GATAAGGCGGAAAGCTAAACTGCTGAGGCAAACGATTGTTGGGAATGGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- GATAAGGCGGAAAGCTAAACTGCTGAGGCAAACGATTGTTGGGAATGGGC
EX769940       <-- GATAAGGCGGAAAGCTAAACTGCTGAGGCAAACGATTGTTGGGAATGGGC
EX774180       --> GATAAGGCGGAAAGCTAAACTGCTGAGGCAAACGATTGTTGGGAATGGGC
EX776565       --> GATAAGGCGGAAAGCTAAACTGCTGAGGCAAACGATTGTTGGGAATGGGC
EX769232       --> GATAAGGCGGAAAGCTAAACTGCTGAGGCAAACGATTGTTGGGAATGGGC
EW718563       --> ..................................................
EW718826       --> ..................................................

               551    -    601
UN08722        --> GTGGTGGGCGGTGGTTGCATCATATTCATAGGCAGAGGGTAGTCAGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- GTGGTGGGCGGTGGTTGCATCATATTCATAGGCAGAGGGTAGTCAGGGAA
EX769940       <-- GTGGTGGGCGGTGGTTGCATCATATTCATAGGCAGAGGGTAGTCAGGGAA
EX774180       --> GTGGTGGGCGGTGGTTGCAT..............................
EX776565       --> GTGGTGGGCGGTGGTTGCATCATATTCATAGGCAGAGGGTAGTCAGGGAA
EX769232       --> ATGGTGGGCGGTGGTTGCATCATATTCATAGGCAGAGGGTAGTCAGGGAA
EW718563       --> ..................................................
EW718826       --> ..................................................

               601    -    651
UN08722        --> ACCGGATTCCAGGTTTAGGACTAGCGGTTTCGAAACCGGGAGGACGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- -CCGGATTCCAGGTTTAGGACTAGCGGTTTCGAAACCGGGAGGACGAGAG
EX769940       <-- ACCGGATTCCAGGTTTAGGACTAGCGGTTTCGAAACCGGGAGGACGAGAG
EX774180       --> ..................................................
EX776565       --> -CCGGATTCCAGGTTTAGGACTAGCGGTTTCGAAACCGGGAGGACGAGAG
EX769232       --> -CCGGATTCCAGGTTTAGGACTAGCGGTTTCGAAACCGGGAGGACGAGAG
EW718563       --> ..................................................
EW718826       --> ..................................................

               651    -    701
UN08722        --> TTATCGTTGTTATCTGCAGGGTAACTCCCAAATCGAGAGAGTGACTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- TTATCGTTGTTATCTGCAGGGTAACTCCCAAATCGAGAGAGTGACTTTGA
EX769940       <-- TTATCGTTGTTATCTGCAGGGTAACTCCCAAATCGAGAGAGTGACTTTGA
EX774180       --> ..................................................
EX776565       --> TTATCGTTGTTATCTGCAGGGTAACTCCCAAATCGAGAGAGTGACTTTGA
EX769232       --> CTATCGTTGTTATCTGCAGGGTAACTCCCAAATCGAGAGAGTGGCTTTGA
EW718563       --> ..................................................
EW718826       --> ..................................................

               701    -    751
UN08722        --> CAAGGAAGGTGACCTGTGTAGTAAAGGAGGAGGCTGCTGCTGCTGGTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- CAAGGAAGGTGACCTGTGTAGTAAAGGAGGAGGCTGCTGCTGCTGGTGGG
EX769940       <-- CAAGGAAGGTGACCTGTGTAGTAAAGGAGGAGGCTGCTGCTGCTGGTGGG
EX774180       --> ..................................................
EX776565       --> CAAGGAAGGTGACCTGTGTAGTAAAG........................
EX769232       --> CAAGGAAGGTGACCTGTGTAGTAACGGAGGAGGCTGCTGCTGCTGGTGGG
EW718563       --> ..................................................
EW718826       --> ..................................................

               751    -    801
UN08722        --> ATCTTAAGGGACCTCTCATGAGTGTGGAGTCAGAAGAAGCAGAAGATTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- ATCTTAAGGGACCTCTCATGAGTGTGGAGTCAGAAGAAGCAGAAGATTGG
EX769940       <-- ATCTTAAGGGACCTCTCATGAGTGTGGAGTCAGAAGAAGCAGAAGATTGG
EX774180       --> ..................................................
EX776565       --> ..................................................
EX769232       --> ATCTTAAGGGACCTCTCATGAGTGTGGAGTCAGAAGAAGCAGAAGATTGG
EW718563       --> ..................................................
EW718826       --> ..................................................

               801    -    851
UN08722        --> TGCTTTGTGGTCTGAAGGTCAGAGTCGTTGCCATCTTCTTTATCAAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- TGCTTTGTGGTCTGAAGGTCAGAGTCGTTGCCATCTTCTTTATCAAGAGG
EX769940       <-- TGCTTTGTGGTCTGAAGGTCAGAGTCGTTGCCATCTTCTTTATCAAGAGG
EX774180       --> ..................................................
EX776565       --> ..................................................
EX769232       --> TGCTTTGTGGTCTGAAGGTCAGAGTCGTTGCCATCTTCTTTATCAAGAGA
EW718563       --> ..................................................
EW718826       --> ..................................................

               851    -    901
UN08722        --> AGCATCGGGTAGTAAAAGGGAGGCGTGGAGGTGATGGACATGGGATACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- AGCATCGGGTAGTAAAAGGGAGGCGTGGAGGTGATGGACATGGGATACAA
EX769940       <-- AGCATCGGGTAGTAAAAGGGAGGCGTGGAGGTGATGGACATGGGATACAA
EX774180       --> ..................................................
EX776565       --> ..................................................
EX769232       --> AGCATCGGGTAGTAAAAGG-AGGCGTGGAGGTGATGGACATGGGATACAA
EW718563       --> ..................................................
EW718826       --> ..................................................

               901    -    951
UN08722        --> AGTCAGGTTTCTTGAGGAAAGACCTGAGACAGTGAGGAGCAGCACAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- AGTCAGGTTTCTTGAGGAAAGACCTGAGACAGTGAGGAGCAGCACAAATG
EX769940       <-- AGTCAGGTTTCTTGAGGAAAGACCTGAGACAGTGAGGAGCAGCACAAATG
EX774180       --> ..................................................
EX776565       --> ..................................................
EX769232       --> A.................................................
EW718563       --> ..................................................
EW718826       --> ..................................................

               951    -   1001
UN08722        --> AAGATACCTTCCATCATCTTGATAGTCTGAATCCAGATTTTTTTAGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- AAGATACCTTCCATCATCTTGATAGTCTGAATCCAGATTTTTTTAGAATG
EX769940       <-- AAGATACCTTCCATCATCTTGATAGTCTGAATCCAGATTTTTTTAGAATG
EX774180       --> ..................................................
EX776565       --> ..................................................
EX769232       --> ..................................................
EW718563       --> ..................................................
EW718826       --> ..................................................

               1001   -   1051
UN08722        --> AAGAAGATGGAATAAAAGGCTTCTGCTATAGATGAAATCGAAGGTTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ..................................................
EW714071       <-- ..................................................
EX772666       <-- AAGAAGATGGAATAAAAGGCTTCTGCTATAGATGAAATCGAAGGTTTCTG
EX769940       <-- AAGAAGATGGAATAAAAGGCTTCTGCTATAGATGAAATCGAAGGTTTCTG
EX774180       --> ..................................................
EX776565       --> ..................................................
EX769232       --> ..................................................
EW718563       --> ..................................................
EW718826       --> ..................................................

               1051   -   1101
UN08722        --> TAAGAAGGGTGATTCATAGCACTTGATTTCAGAATGATTTCGAACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714070       <-- ...............................................
EW714071       <-- ...............................................
EX772666       <-- TAAGAAGGGTGATTCATAGCACTTGATTTCAGAATGATTTCGAACCC
EX769940       <-- TAAGAAGGGTGATTC................................
EX774180       --> ...............................................
EX776565       --> ...............................................
EX769232       --> ...............................................
EW718563       --> ...............................................
EW718826       --> ...............................................