1      -     51
UN08757        --> GGGGGGGGTCTTAATTATTCCTTTTCCTTTTCTTTTTCCTATTTTCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- GGGGGGGGTCTTAATTATTCCTTTTCCTTTTCTTTTTCCTATTTTCTGAA
FD936345       <-- ..................................................
FD953628       <-- ..................................................
FD540050       --> GGGGGGGGTCTTAATTATTCCTTTTCCTTTTCTTTTTCCTATTTTCTGAA
EV536517       --> ..................................................
FD940470       --> ..................................................
FD958057       --> ..................................................

               51     -    101
UN08757        --> ACGTCAAAAAGTTGATCTTACCACCAAAGCGAAAGATCGATCCCTCCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- ACGTCAAAAAGTTGATCTTACCACCAAAGCGAAAGATCGATCCCTCCTTG
FD936345       <-- ....................................ggaATCCCTCCTTG
FD953628       <-- ..................................................
FD540050       --> ACGTCAAAAAGTTGATCTTACCACCAAAGCGAAAGATCGATCCCTCCTTG
EV536517       --> ....................................ggGATCCCTCCTTG
FD940470       --> ....................................ggaATCCCTCCTTG
FD958057       --> ..................................................

               101    -    151
UN08757        --> CGTATAAGCAAAACTCTTATCGATAGAGAGGGCTAGGAAAATGGGTTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- CGTATAAGCAAAACTCTTATCGATAGAGAGGGCTAGGAAAATGGGTTACA
FD936345       <-- CGTATAAGCAAA-CTCTTATCGATAGAGAGGGCTAGGAAAATGGGTTACA
FD953628       <-- ..................................................
FD540050       --> CGTATAAGCAAAACTCTTATCGATAGAGAGGGCTAGGAAAATGGGTTACA
EV536517       --> CGTATAAGCAAAACTCTTATCGATAGAGAGGGCTAGGAAAATGGGTTACA
FD940470       --> CGTATAAGCAAA-CTCTTATCGATAGAGAGGGCTAGGAAAATGGGTTACA
FD958057       --> ................................ggAGGAAAATGGGTTACA

               151    -    201
UN08757        --> TGTGTAGAGAGACGGAGGATAGCTCATGGCGGCGTCTGGCATTCTTAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- TGTATAGAGAGACGGAGGAGAGCTCATGGCGGCGTCTGGCATTTTTAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD936345       <-- TGTGTAGAGAGACGGAGGATAGCTCATGGCGGCGTCTGGCATTTTTAGCT  Raphanus sativus var. oleiformis
FD953628       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD540050       --> TGTATAGAGAGACGGAGGAGAGCTCATGGCGGCGTCTGGCATTCTTAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536517       --> TGTATAGAGAGACGGAGGAGAGCTCATGGCGGCGTCTGGCATTCTTAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940470       --> TGTGTAGAGAGACGGAGGATAGCTCATGGCGGCGTCTGGCATTCTTAGCT  Raphanus sativus var. oleiformis
FD958057       --> TGTGTAGAGAGACGGAGGATAGCTCATGGCGGCGTCTGGCATTCTTAGCT  Raphanus sativus cv Rat-Tail Radish #3870

               201    -    251
UN08757        --> TCGATTTCTCTGCACTTCGTCTTAGGTCTATCAGGCGATTCCAAGAGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- TCGATTTCTCTGCACTTCGTCTTAGGTCTATCAGGCGATTCCAAGAATAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD936345       <-- TCGATTTCTCTGCACTTCGTCTTAGGTCTATCAGGCGATTCCAAGAGTAC  Raphanus sativus var. oleiformis
FD953628       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD540050       --> TCGATTTCTCTGCACTTCGTCTTAGGTCTATCAGGCGATTCCAAGAATAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536517       --> TCGATTTCTCTGCACTTCGTCTTAGGTCTATCAGGCGATTCCAAGAATAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940470       --> TCGATTTCTCTGCACTTCGTCTTAGGTCTATCAGGCGATTCCAAGAGTAC  Raphanus sativus var. oleiformis
FD958057       --> TCGATCTCTCTGCACTTCGTCTTAGGTCTATCAGGCGATTCCAAGAGTAC  Raphanus sativus cv Rat-Tail Radish #3870

               251    -    301
UN08757        --> AAACACAGGAGTCAAGGCAGAGTCACACGCTTCTTCCAGCAGAACAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- AAACACAGGAGTCAAGGCAGAGTCACACGCTTCTTCCAGCAGAACAGGCA
FD936345       <-- AAACACAGGAGTCAAGGCAGAGTCACACGCTTCTTCCAGCAGAACAGGCA
FD953628       <-- ..................................................
FD540050       --> AAACACAGGAGTCAAGGCAGAGTCACACGCTTCTTCCAGCAGAACAGGCA
EV536517       --> AAACACAGGAGTCAAGGCAGAGTCACACGCTTCTTCCAGCAGAACAGGCA
FD940470       --> AAACACAGGAGTCAAGGCAGAGTCACACGCTTCTTCCAGCAGAACAGGCA
FD958057       --> AAACACAGGAGTCAAGGCAGAGTCACACGCTTCTTCCAGCAGAACAGGCA

               301    -    351
UN08757        --> CAAAAGTATTCCTAATACTGGTCGGATTCGTGGCTGTAGCTATGTTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- CAAAAGTATTCCTAATACTGGTCGGATTCGTGGCTGTAGCTATGTTCTCC
FD936345       <-- CAAAAGTATTCCTAATACTGGTCGGATTCGTGGCTGTAGCTATGTTCTCC
FD953628       <-- .........................................ATGTTTTCC
FD540050       --> CAAAAGTATTCCTAATACTGGTCGGATTCGTGGCTGTAGCTATGTTCTCC
EV536517       --> CAAAAGTATTCCTAATACTGGTCGGATTCGTGGCTGTAGCTATGTTCTCC
FD940470       --> CAAAAGTATTCCTAATACTGGTCGGATTCGTGGCTGTAGCTATGTTCTCC
FD958057       --> CAAAAGTATTCCTAATACTGGTCGGATTCGTGGCTGTAGCTATGTTCTCC

               351    -    401
UN08757        --> TTCTTTCTATACAAGCTATGGCAGAAGAAGAAAAGAGACGAGCAGTATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- TTCTTTCTATACAAGCTATGGCAGAAGAAGAAAAGAGACGAGCAGTATGC
FD936345       <-- TTCTTTCTATACAAGCTATGGC............................
FD953628       <-- TTCTTTCTATACAAGCTATGGCAGAAGAAGAAAAGAGACGAGCAGTATGC
FD540050       --> TTCTTTCTATACAAGCTATGGCAGAAGAAGAAAAGAGACGAGCAGTATGC
EV536517       --> TTCTTTCTATACAAGCTATGGCAGAAGAAGAAAGGAGACGAGCAGTATGC
FD940470       --> TTCTTTCTATACAAGCTATGGC............................
FD958057       --> TTCTTTCTATACAAGCTATGGCAGAAGAAGAAAAGAGACGAGCAGTATGC

               401    -    451
UN08757        --> CCGACTGCTAAAGCTTTTTGAGGAAGATGATGAACTAGAGGTTGAGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- CCGACTGCTAAAGCTTTTTGAGGAAGATGATGAACTAGAGGTTGAGCTTG
FD936345       <-- ..................................................
FD953628       <-- CCGACTGCTAAAGCTTTTTGAGGAAGATGATGAACTGGAGGTTGAGCTTG
FD540050       --> CCGACTGCTAAAGCTTTTTGAGGAAGATGATGAACTAGAGGTTGAGCTTG
EV536517       --> CCGACTGCTAAAGCTTTTTGAGGAAGATGATGAACTAGAGGTTGAGCTTG
FD940470       --> ..................................................
FD958057       --> CCGACTGCTAAAGCTTTTTGAGGAAGATGATGAACTGGAGGTTGAGCTTG

               451    -    501
UN08757        --> GCCTTCGAGATTAAAAAGTTTCAAGCTGTCTACCATGTTTGTTTGGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- GCCTTCGAGATTAAAAAGTTTCAAGCTGTCTACCATGTTTGTTTGGGTTG
FD936345       <-- ..................................................
FD953628       <-- GCCTTCGAGATTAAAAAGTTTCAAGCTGTCTACCATATTTGTTTGTGTTG
FD540050       --> GCCTTCGAGATTAAAAAGTTTCAAGCTGTCTACCATGTTTGTTTGGGTTG
EV536517       --> GCCTTCGAGATTAAAAAGTTTCAAGCTGTCTACCATGTTTGTTTGGGTTG
FD940470       --> ..................................................
FD958057       --> GCCTTCGAGATTAAAAAGTTTCAAGCTGTCTACCATATTTGTTTGTGTTG

               501    -    551
UN08757        --> GCTTGTTTTTTCCATGTAAGATAAATTATAGGTGTATTAAGAAGGATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- GCTTGTTTTTTCCATGTAAGATAAATTATAGGTGTATTAAGAAGGATCAG
FD936345       <-- ..................................................
FD953628       <-- GCTTGTTTTTACCATGTAAGATAAATTATAGG--TATTAAGAAGGATCAG
FD540050       --> GCTTGTTTT.........................................
EV536517       --> GCTTGTTTTTTCCATGTAAGATAAATTATAGGTGTATTAAGAAGGATCAG
FD940470       --> ..................................................
FD958057       --> GCTTGTTTTTACCATGTAAGATAAATTATAGGT--ATTAAGAAGGATCAG

               551    -    601
UN08757        --> AGCTTGTCTTTGGTTAAAGTTTTTACTTTCAAGTGATCTTATGTTTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- AGCATGTCTTTGGTTAAAGTTTTTACTTTCAAGTGATCTTATGTTTTGTT
FD936345       <-- ..................................................
FD953628       <-- AGCTTGTCTTTGGTTAAAGTTTTTACTTTCAAGTGATCTTATGTTTTGTT
FD540050       --> ..................................................
EV536517       --> AGCATGTCTTTGGTTAAAGTTTTTACTTTCAAGTGATCTTATGTTTTGTT
FD940470       --> ..................................................
FD958057       --> AGCTTGTCTTTGGTTAAAGTTTTTACTTTCAAGTGATCTTATGTTTTGTT

               601    -    651
UN08757        --> ATCTTGGTGAAATATATAATAATGCAGACGAAATTT-ATTTTTATATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- ATCTTGGTGAAATATATAATAATGCAGACGAAATTT-ATTTTT.......
FD936345       <-- ..................................................
FD953628       <-- ATCTTGGTGAAATATATAATA.............................
FD540050       --> ..................................................
EV536517       --> ATCTTGGTGAAATATATAATAATGCAGACGAAATTT-ATTTTTATATATA
FD940470       --> ..................................................
FD958057       --> ATCTTGGTGAAATATATAATAATGCACACGAAATTTTATTTTTATATATG

               651    -    701
UN08757        --> CTTTGAAATTATGTAGCAGTGGAATTATTCGAATGAAGTAATGTTGGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD536629       <-- ..................................................
FD936345       <-- ..................................................
FD953628       <-- ..................................................
FD540050       --> ..................................................
EV536517       --> CTTTGAAATGATGTAGCAGTGGAATTATTCGAATGAAGTAATGTTGGACT
FD940470       --> ..................................................
FD958057       --> CTTTGAAATTATGTAGC.................................