Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN08840

               1      -     51
UN08840        --> GGATAAGCATCTGGAGATTCGACAGAGCTACCCGAGAGAGAGAAGAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- GGATAAGCATCTGGAGATTCGACAGAGCTACCCGAGAGAGAGAAGAGAAG
EY928524       <-- .............ggGATTCGACAGAGCTACCCGAGAGAGAGAAGAGAAG
EY910258       <-- .....................gggagagagagaagagaAGAGAAGAGAAG
EX769270       <-- .............................................AGAAG
FD560768       --> GGATAAGCATCTGGAGATTCGACAGAGCTACCCGAGAGAGAGAAGAGAAG
EY932921       --> .............ggGATTCGACAGAGCTACCCGAGAGAGAGAAGAGAAG
EY933465       --> .....................ggAGAGCTACCCGAGAGAGAGAAGAGAAG
EW723677       --> ...........................ggACCCGAGAGAGAGAAGAGAAG
EX765483       --> ............ggacccgagagagagaagagaagagaAGAGAAGAGAAG
EY914159       --> .....................gggagagagagaagagaAGAGAAGAGAAG

               51     -    101
UN08840        --> AGAAGAGAAGAGAGAAGATTAAGCAAAAGCGATGGGTGTAGAGAAGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- AGAAGAGAAGAGAGAAGATTAAGCAAAAGCGATGGGTGTAGAGAAGCAAG
EY928524       <-- AGAAGAGAAGAGAGAAGATTAAGCAAAAGCGATGGGTGTAGAGAAGCAAG
EY910258       <-- AGAAGAGAAGAGAGAAGATTAAGCAAAAGCGATGGGTGTAGAGAAGCAAG
EX769270       <-- AGAAGAGAAGAGAGAAGATTAAGCAAAAGCGATGGGTGTAGAGAAGCAAG
FD560768       --> AGAAGAGAAGAGAGAAGATTAAGCAAAAGCGATGGGTGTAGAGAAGCAAG
EY932921       --> AGAAGAGAAGAGAGAAGATTAAGCAAAAGCGATGGGTGTAGAGAAGCAAG
EY933465       --> AGAAGAGAAGAGAGAAGATTAAGCAAAAGCGATGGGTGTAGAGAAGCAAG
EW723677       --> AGAAGAGAAGAGAGAAGATTAAGCAAAAGCGATGGGTGTAGAGAAGCAAG
EX765483       --> AGAAGAGAAGAGAGAAGATTAAGCAAAAGCGATGGGTGTAGAGAAGCAAG
EY914159       --> AGAAGAGAAGAGAGAAGATTAAGCAAAAGCGATGGGTGTAGAGAAGCAAG

               101    -    151
UN08840        --> TCATCAGACCCGGCACTGGTGCCAAACCCGCTCCAGGTCAAACCGTCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- TCATCAGACCCGGCACTGGTGCCAAACCCGCTCCAGGTCAAACCGTCACC
EY928524       <-- TCATCAGACCCGGCACTGGTGCCAAACCCGCTCCAGGTCAAACCGTCACC
EY910258       <-- TCATCAGACCCGGCACTGGTGCCAAACCCGCTCCAGGTCAAACCGTCACC
EX769270       <-- TCATCAGACCCGGCACTGGTGCCAAACCCGCTCCAGGTCAAACCGTCACC
FD560768       --> TCATCAGACCCGGCACTGGTGCCAAACCCGCTCCAGGTCAAACCGTCACC
EY932921       --> TCATCAGACCCGGCACTGGTGCCAAACCCGCTCCAGGTCAAACCGTCACC
EY933465       --> TCATCAGACCCGGCACTGGTGCCAAACCCGCTCCAGGTCAAACCGTCACC
EW723677       --> TCATCAGACCCGGCACTGGTGCCAAACCCGCTCCAGGTCAAACCGTCACC
EX765483       --> TCATCAGACCCGGCACTGGTGCCAAACCCGCTCCAGGTCAAACCGTCACC
EY914159       --> TCATCAGACCCGGCACTGGTGCCAAACCCGCTCCAGGTCAAACCGTCACC

               151    -    201
UN08840        --> GTCCACTGCACTGGATTCGGGAAAGGTGGTGATCTTTCCCAACAGTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- GTCCACTGCACTGGATTCGGGAAAGGTGGTGATCTTTCCCAACAGTTTTG  Raphanus sativus var. oleiformis
EY928524       <-- GTCCACTGCACTGGATTCGGGAAAGGTGGTGATCTTTCCCAACAGTTCTG  Raphanus sativus var. oleiformis
EY910258       <-- GTCCACTGCACTGGATTTGGGAAAGGTGGTGATCTTTCCCAACAGTTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769270       <-- GTCCACTGCACTGGATTTGGGAAAGGTGGTGATCTTTCCCAACAGTTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD560768       --> GTCCACTGCACTGGATTCGGGAAAGGTGGTGATCTTTCCCAACAGTTCTG  Raphanus sativus var. oleiformis
EY932921       --> GTCCACTGCACTGGATTCGGGAAAGGTGGTGATCTTTCCCAACAGTTCTG  Raphanus sativus var. oleiformis
EY933465       --> GTCCACTGCACTGGATTCGGGAAAGGTGGTGATCTTTCCCAACAGTTCTG  Raphanus sativus var. oleiformis
EW723677       --> GTCCACTGCACTGGATTCGGGAAAGGTGGTGATCTTTCCCAACAGTTCTG  Raphanus sativus cv Early Scarlet Globe
EX765483       --> GTCCACTGCACTGGATTTGGGAAAGGTGGTGATCTTTCCCAACAGTTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914159       --> GTCCACTGCACTGGATTTGGGAAAGGTGGTGATCTTTCCCAACAGTTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN08840        --> GAGTACAAAGGACGCTGGGCAAAAACCTTTCTCCTTCCAAATCGGTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- GAGTACAAAGGACGCTGGGCAAAAACCTTTCTCCTTCCAAATCGGTGAAG
EY928524       <-- GAGTACAAAGGACGCTGGGCAAAAACCTTTCTCCTTCCAAATCGGTGAAG
EY910258       <-- GAGTACAAAGGACGCTGGGCAAAAACCTTTCTCCTTCCAAATCGGTGAAG
EX769270       <-- GAGTACAAAGGACGCTGGGCAAAAACCTTTCTCCTTCCAAATCGGTGAAG
FD560768       --> GAGTACAAAGGACGCTGGGCAAAAACCTTTCTCCTTCCAAATCGGTGAAG
EY932921       --> GAGTACAAAGGACGCTGGGCAAAAACCTTTCTCCTTCCAAATCGGTGAAG
EY933465       --> GAGTACAAAGGACGCTGGGCAAAAACCTTTCTCCTTCCAAATCGGTGAAG
EW723677       --> GAGTACAAAGGACGCTGGGCAAAAACCTTTCTCCTTCCAAATCGGTGAAG
EX765483       --> GAGTACAAAGGACGCTGGGCAAAAACCTTTCTCCTTCCAAATCGGTGAAG
EY914159       --> GAGTACAAAGGACGCTGGGCAAAAACCTTTCTCCTTCCAAATCGGTGAAG

               251    -    301
UN08840        --> GTGCTGTCATCAAAGGATGGGATGAAGGCGTTATGGGAATGCAAATTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- GTGCTGTCATCAAAGGATGGGATGAAGGCGTTATGGGAATGCAAATTGGA
EY928524       <-- GTGCTGTCATCAAAGGATGGGATGAAGGCGTTATGGGAATGCAAATTGGA
EY910258       <-- GTGCTGTCATCAAAGGATGGGATGAAGGCGTTATGGGAATGCAAATTGGA
EX769270       <-- GTGCTGTCATCAAAGGATGGGATGAAGGCGTTATGGGAATGCAAATTGGA
FD560768       --> GTGCTGTCATCAAAGGATGGGATGAAGGCGTTATGGGAATGCAAATTGGA
EY932921       --> GTGCTGTCATCAAAGGATGGGATGAAGGCGTTATGGGAATGCAAATTGGA
EY933465       --> GTGCTGTCATCAAAGGATGGGATGAAGGCGTTATGGGAATGCAAATTGGA
EW723677       --> GTGCTGTCATCAAAGGATGGGATGAAGGCGTTATGGGAATGCAAATTGGA
EX765483       --> GTGCTGTCATCAAAGGATGGGATGAAGGCGTTATGGGAATGCAAATTGGA
EY914159       --> GTGCTGTCATCAAAGGATGGGATGAAGGCGTTATGGGAATGCAAATTGGA

               301    -    351
UN08840        --> GAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCATATGGTCCTGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- GAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCATATGGTCCTGGTGG
EY928524       <-- GAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCATATGGTCCTGGTGG
EY910258       <-- GAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCATATGGTCCTGGTGG
EX769270       <-- GAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCATATGGTCCTGGTGG
FD560768       --> GAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCATATGGTCCTGGTGG
EY932921       --> GAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCATATGGTCCTGGTGG
EY933465       --> GAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCATATGGTCCTGGTGG
EW723677       --> GAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCATATGGTCCTGGTGG
EX765483       --> GAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCATATGGTCCTGGTGG
EY914159       --> GAGGTTGCTCGCTTGCGGTGCTCACCGGATTACGCATATGGTCCTGGTGG

               351    -    401
UN08840        --> ATTTCCCGCGTGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAAATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- ATTTCCCGCGTGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAAATCG
EY928524       <-- ATTTCCCGCGTGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAAATCG
EY910258       <-- ATTTCCCGCGTGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAAATCG
EX769270       <-- ATTTCCCGCGTGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAAATCG
FD560768       --> ATTTCCCGCGTGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAAATCG
EY932921       --> ATTTCCCGCGTGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAAATCG
EY933465       --> ATTTCCCGCGTGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAAATCG
EW723677       --> ATTTCCCGCGTGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAAATCG
EX765483       --> ATTTCCCGCGTGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAAATCG
EY914159       --> ATTTCCCGCGTGGGGAATCCAGCCAAACTCGGTTCTCGACTTTGAAATCG

               401    -    451
UN08840        --> AAGTACTCAGCGTGCAGTAATGCTCTCTCTATTGACAAAAGCACAACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- AAGTACTCAGCGTGCAGTAATGCTCTCTCTATTGACAAAAGCACAACAAA
EY928524       <-- AAGTACTCAGCGTGCAGTAATGCTCTCTCTATTGACAAAAGCACAACAAA
EY910258       <-- AAGTACTCAGCGTGCAGTAATGCTCTCTCTATTGACAAAAGCACAACAAA
EX769270       <-- AAGTACTCAGCGTGCAGTAATGCTCTCTCTATTGACAAAAGCACAACAAA
FD560768       --> AAGTACTCAGCGTGCAGTAATGCTCTCTCTATTGACAAAAGCACAACAAA
EY932921       --> AAGTACTCAGCGTGCAGTAATGCTCTCTCTATTGACAAAAGCACAACAAA
EY933465       --> AAGTACTCAGCGTGCAGTAATGCTCTCTCTATTGACAAAAGCACAACAAA
EW723677       --> AAGTACTCAGCGTGCAGTAATGCTCTCTCTATTGACAAAAGCACAACAAA
EX765483       --> AAGTACTCAGCGTGCAGTAATGCTCTCTCTATTGACAAAAGCACAACAAA
EY914159       --> AAGTACTCAGCGTGCAGTAATGCTCTCTCTATTGACAAAAGCACAACAAA

               451    -    501
UN08840        --> ACTTATGTGGTGTTTACCCTTTTTATGTTTATCGCTTCGGGGATCTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- ACTTATGTGGTGTTTACCCTTTTTATGTTTATCGCTTCGGGGATCTTTGT
EY928524       <-- ACTTATGTGGTGTTTACCCTTTTTATGTTTATCGCTTCGGGGATCTTTGT
EY910258       <-- ACTTATGTGGTGTTTACCCTTTTTATGTTTATCGCTTCGGGGATCTTTGT
EX769270       <-- ACTTATGTGGTGTTTACCCTTTTTATGTTTATCGCTTCGGGGATCTTTGT
FD560768       --> ACTTATGTGGTGTTTACCCTTTTTATGTTTATCGCTTCGGGGATCTTTGT
EY932921       --> ACTTATGTGGTGTTTACCCTTTTTATGTTTATCGCTTCGGGGATCTTTGT
EY933465       --> ACTTATGTGGTGTTTACCCTTTTTATGTTTATCGCTTCGGGGATCTTTGT
EW723677       --> ACTTATGTGGTGTTTACCCTTTTTATGTTTATCGCTTCGGGGATCTTTGT
EX765483       --> ACTTATGTGGTGTTTACCCTTTTTATGTTTATCGCTTCGGGGATCTTTGT
EY914159       --> ACTTATGTGGTGTTTACCCTTTTTATGTTTATCGCTTCGGGGATCTTTGT

               501    -    551
UN08840        --> TCAAATAAAACTTTGTGATGTCACTCTTGTCAGTACTTGTCTAAACTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- TCAAATAAAACTTTGTGATGTCACTCTTGTCAGTACTTGTCTAAACTCGG
EY928524       <-- TCAAATAAAACTTTGTGATGTCACTCTTGTCAGTACTTGTCTAAACTCGG
EY910258       <-- TCAAATAAAACTTTGTGATGTCACTCTTGTCAGTACTTGTCTAAACTCGG
EX769270       <-- TCAAATAAAACTTTGTGATGTCACTCTTGTCAGTACTTGTCTAAACTCGG
FD560768       --> TCAAATAAAACTTTGTGATGTCACTCTTGTCAGTACTTGTCTAAACTCGG
EY932921       --> TCAAA.............................................
EY933465       --> TCAAATAAAACTTTGTGATGTCACTCTTGTCAGTACTTGTCTAAACTCGG
EW723677       --> TCAAATAAAACTTTGTGATGTCACTCTTGTCAGTACTTGTCTAAACTCGG
EX765483       --> TCAAATAAAACTTTGTGATGTCACTCTTGTCAGTACTTGTCTAAACTCGG
EY914159       --> TCAAATAAAACTTTGTGATGTCACTCTTGTCAGTACTTGTCTAAACTCGG

               551    -    601
UN08840        --> TGGACAACGTTCTATCTTAAATAAAAGACCCCCGTTACTCTTGTTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD565108       <-- TGGACAACGTTCTATCTTAAATAAAAGACCCCCGTTACTCTTGTTCCG
EY928524       <-- TGGACAACGTTCTATCTTAAATAAAAGACCCCCGTTACTC........
EY910258       <-- TGGACAACGTTCTATCTTAAATAAAAGCCCCCCGTTACTCTTGTTtc.
EX769270       <-- TGGACAACGTTCTATCTTAAATAAAAGACCCCTGTTACTCTTGTTCC.
FD560768       --> TGGACAACGTTCTATCTTAAATAAAAGACCCCCGTTACTCTTGTTCCG
EY932921       --> ................................................
EY933465       --> TGGACAACGTTCTATCTTAAATAAAAGACCCCCGTTACTCTTGTTt..
EW723677       --> TGGACAACGTTCTATCTTAAATAAAAGACCCCCGTTACTCTTGTT...
EX765483       --> TGGACAACGTTCTATCTTAAATAAAAGACCCCTGTTACTCTTGTTCC.
EY914159       --> TGGACAACGTTCTATCTTAAATAAAAGACCCCCGTTACTCTTGTTtc.