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Alignment for radish unigene UN08959

               1      -     51
UN08959        --> GGATCCGCCTCGTCTCTCAACCTCACACTCAAACCTCAGACAGAACAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- ..................................................
FD566476       <-- ..................................................
EX891164       <-- ..................................................
FD934507       <-- ..................................................
FD936749       <-- ..................................................
FD978601       --> GGATCCGCCTCGTCTCTCAACCTCACACTCAAACATCAGACAGAACAGCC
EX765430       --> .............................gAAACCTCAGACAGAACAGCC
EV548170       --> ..................................................
FD548752       --> ..................................................
FD551668       --> ..................................................
EY916366       --> ..................................................
FD562122       --> ..................................................

               51     -    101
UN08959        --> CTTTCTGTAGAGCACTGTGTATTAACCAAGTCACACGGAGTCCTTTGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- ..................................................
FD566476       <-- ..................................................
EX891164       <-- ..................................................
FD934507       <-- ..................................................
FD936749       <-- ..................................................
FD978601       --> CTTTCTGTAGAGCACTGTGTATTAACCAAGTCACACGGAGTCCTTTGAGT
EX765430       --> CTTTCTGTAGAGCACTGTGTATTAACCAAGTCACACGGAGTCCTTTGAGT
EV548170       --> ......ggAGAGCACTGTGTATTAACCAAGTCACACGGAGTCCTTTGAGT
FD548752       --> ......ggAGAGCACTGTGTATTAACCAAGTCACACGGAGTCCTTTGAGT
FD551668       --> ................ggGTATTAACCAAGTCACACGGAGTCCTTTGAGT
EY916366       --> ..................................................
FD562122       --> ..................................................

               101    -    151
UN08959        --> CCATGGCGTCCTTAGCTTCATCCACCACTCTTATCTCTTCCGCTAGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- ..................................................
FD566476       <-- ..................................................
EX891164       <-- ..................................................
FD934507       <-- ..................................................
FD936749       <-- ..................................................
FD978601       --> CCATGGCGTCCTTAGCTTCATCCACCACTCTTATCTCTTCCGCTAGAGTT
EX765430       --> CCATGGCGTCCTTAGCTTCATCCACCACTCTTATCTCTTCCGCTAGAGTT
EV548170       --> CCATGGCGTCCTTAGCTTCATCCACCACTCTTATCTCTTCCGCTAGAGTT
FD548752       --> CCATGGCGTCCTTAGCTTCATCCACCACTCTTATCTCTTCCGCTAGAGTT
FD551668       --> CCATGGCGTCCTTAGCTTCATCCACCACTCTTATCTCTTCCGCTAGAGTT
EY916366       --> ggATGGCGTCCTTAGCTTCATCCACCACTCTTATCTCTTCCGCTAGAGTT
FD562122       --> ..................................................

               151    -    201
UN08959        --> CTCCCCTCCAAGCCTTCTCTCTTTTCTCCCGCCGTCTCTTCCCTCCGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- ..................................................
FD566476       <-- ..................................................
EX891164       <-- ..................................................
FD934507       <-- ..................................................
FD936749       <-- ..................................................
FD978601       --> CTCCCCTCCAAGCCTTCTCTCTTTTCTCCCGCCGTCTCTTCCCTCCGAAC
EX765430       --> CTCCCCTCCAAGCCTTCTCTCTTTTCTCCCGCCGTCTCTTCCCTCCGAAC
EV548170       --> CTCCCCTCCAAGCCTTCTCTCTTTTCTCCCGCCGTCTCTTCCCTCCGAAC
FD548752       --> CTCCCCTCCAAGCCTTCTCTCTTTTCTCCCGCCGTCTCTTCCCTCCGAAC
FD551668       --> CTCCCCTCCAAGCCTTCTCTCTTTTCTCCCGCCGTCTCTTCCCTCCGAAC
EY916366       --> CTCCCCTCCAAGCCTTCTCTCTTTTCTCCCGCCGTCTCTTCCCTCCGAAC
FD562122       --> ..................................................

               201    -    251
UN08959        --> TCTTCCCTCTTCCTCTGCTTCATCACCGTCTTCCCTCTGCTCCGGTGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- ..................................................
FD566476       <-- ..................................................
EX891164       <-- ..................................................
FD934507       <-- ..................................................
FD936749       <-- ..................................................
FD978601       --> TCCTCCCTCTTCCTCTGCTTCATCACCGTCTTCCCTCTGCTCCGGTGTCT
EX765430       --> TCTTCCCTCTTCCTCTGCTTCATCACCGTCTTCCCTCTGCTCCGGTGTCT
EV548170       --> TCTTCCCTCTTCCTCTGCTTCATCACCGTCTTCCCTCTGCTCCGGTGTCT
FD548752       --> TCTTCCCTCTTCCTCTGCTTCATCACCGTCTTCCCTCTGCTCCGGTGTCT
FD551668       --> TCTTCCCTCTTCCTCTGCTTCATCACCGTCTTCCCTCTGCTCCGGTGTCT
EY916366       --> TCTTCCCTCTTC-TCTGCTTCATCACCGTCTTCCCTCTGCTCCGGTGTCT
FD562122       --> ..................................................

               251    -    301
UN08959        --> CCCGCATCGTTCCCCTCACCTCCAACAGCAGCTCTTCCTCTCGCCGTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- .......................................CTCGCCGTAGC
FD566476       <-- ..................................................
EX891164       <-- ..................................................
FD934507       <-- ..................................................
FD936749       <-- ..................................................
FD978601       --> CCCGCATCGTTCCCCTCACCTCCAACAGCAGCTCTTCCTCTCGCCGTAGC
EX765430       --> CCCGCATCGTTCCCCTCACCTCCAACAGCAGCTCTTCCTCTCGCCGTAGC
EV548170       --> CCCGCATCGTTCCCCTCACCTCCAACAGCAGCTCTTCCTCTCGCCGTAGC
FD548752       --> CCCGCATCGTTCCCCTCACCTTCAACAGCAGCTCTTCCTCTCGCCGTAGC
FD551668       --> CCCGCATCGTTCCCCTCACCTCCAACAGCAGCTCTTCCTCTCGCCGTAGC
EY916366       --> CCCGCATCGTTCCCCTCACCTCCAACAGCAGCTCTTCCTCTCGCCGTAGC
FD562122       --> ..................................................

               301    -    351
UN08959        --> TTCGCCGTCAAGGCCCAGACCGATGATTTGCCACTGGTTGGTAATAAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- TTCGCCGTCAAGGCCCAGGCCGATGATTTGCCACTAGTTGGTAATAGGGC
FD566476       <-- .........AAGGCCCAGGCCGATGATTTGCCACTAGTTGGTAATAGGGC
EX891164       <-- ..................................................
FD934507       <-- ..................................................
FD936749       <-- ..................................................
FD978601       --> TTCGCCGTCAAGGCCCAGACCGATGATTTGCCACTGGTTGGTAATAAGGC
EX765430       --> TTCGCCGTCAAGGCCCAGACCGATGATTTGCCGCTGGTTGGTAATAAGGC
EV548170       --> TTCGCCGTCAAGGCCCAGACCGATGATTTGCCGCTGGTTGGTAATGAGGC
FD548752       --> TTCGCCGTCAAGGCCCAGACCGATGATTTGTCACTGGTTGGTAATAAGGC
FD551668       --> TTCGCCGTCAAGGCCCAGACCGATGATTTGCCACTGGTTGGTAATAAGGC
EY916366       --> TTCGCCGTCAAGGCCCAGACCGATGATTTGCCACTGGTTGGTAATAAGGC
FD562122       --> ..................................................

               351    -    401
UN08959        --> GCCTGATTTTGAGGCAGAGGCTGTTTTTGATCAAGAGTTCATCAAGGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- GCCTGATTTTGAGGCAGAGGCTGTTTTTGATCAAGAGTTCATCAAGGTGA
FD566476       <-- GCCTGATTTTGAGGCAGAGGCTGTTTTTGATCAAGAGTTCATCAAGGTGA
EX891164       <-- .............................ATCAAGAGTTCATCAAGGTGA
FD934507       <-- ..................................................
FD936749       <-- ..................................................
FD978601       --> GCCTGATTTTGAGGCAGAGGCTGTTTTTGATCAAGAGTTCATCAAGGTGA
EX765430       --> GCCTGATTTTGAGGCAGAGGCTGTTTTTGATCAAGAGTTCATCAAGGTGA
EV548170       --> GCCTGATTTTGAGGCAGAGGCTGTTTTTGATCAAGAGTTCATCAAGGTGA
FD548752       --> GCCTGATTTTGAGGCAGAGGCTTTTTTTGATCAAGAGTTCATCAGGGTGA
FD551668       --> GCCTGATTTTGAGGCAGAGGCTGTTTTTGATCAAGAGTTCATCAAGGTGA
EY916366       --> GCCTGATTTTGAGGCAGAGGCTGTTTTTGATCAAGAGTTCATCAAGGTGA
FD562122       --> ..................................................

               401    -    451
UN08959        --> AGCTCTCAGAGTACATTGGTAAAAAATATGTGATCCTGTTTTTCTACCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- AGCTCTCAGAGTACATTGGTAAAAAATATGTGATTCTATTTTTCTACCCA
FD566476       <-- AGCTCTCAGAGTACATTGGTAAAAAATATGTGATTCTATTTTTCTACCCA
EX891164       <-- AGCTCTCAGAGTACATTGGTAAAAAATATGTGATTCTATTTTTCTACCCA
FD934507       <-- ..................................................
FD936749       <-- ..................................................
FD978601       --> AGCTCTCAGAGTACATTGGTAAAAAATATGTGATCCTGTTTTTCTACCCA
EX765430       --> AGCTCTCAGAGTACATTGGTAAAGAATATGTGATCCTGTTTTTCTACCCA
EV548170       --> AGCTCTCAGAGTACATTGGTAAAAAATATGTGATCCTGTTTTTCTACCCA
FD548752       --> AGCTCTCAGAGTACATTGGTAAAAAATATGTGATCCTGTTTTTCTACCCA
FD551668       --> AGCTCTCAGAGTACATTGGTAAAAAATATGTGATCCTGTTTTTCTACCCA
EY916366       --> AGCTCTCAGAGTACATTGGTAAAAAATATGTGATCCTGTTTTTCTACCCA
FD562122       --> ..................................................

               451    -    501
UN08959        --> TTGGACTTCACTTTTGTCTGCCCTACAGAGATTACTGCCTTCAGTGACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- TTGGACTTCACTTTTGTCTGCCCTACAGAGATTACTGCCTTCAGTGACCG
FD566476       <-- TTGGACTTCACTTTTGTCTGCCCTACAGAGATTACTGCCTTCAGTGACCG
EX891164       <-- TTGGACTTCACTTTTGTCTGCCCTACAGAGATTACTGCCTTCAGTGACCG
FD934507       <-- .....................................CCTTCAGTGACCG
FD936749       <-- ..................................................
FD978601       --> TTGGACTTCACTTTTGCCTGCCCTACAGAGATTACTGCCTTCAGTGACCG
EX765430       --> TTGGACTTCACTTTTGTCTGCCCTACAGAGATTACTGCCTTCAGTGACCG
EV548170       --> TTGGACTTCACTTTTGTCTGCCCTACAGAGATTACTGCCTTCAGTGACCG
FD548752       --> TTGGACTTCACTTTTGTCTGCCCTACAGAGATTACTGCCTTCAGTGACCG
FD551668       --> TTGGACTTCACTTTTGTCTGCCCTACAGAGATTACTGCCTTCAGTGACCG
EY916366       --> TTGGACTTCACTTTTGTCTGCCCTACAGAGATTACTGCCTTCAGTGACCG
FD562122       --> ..................................................

               501    -    551
UN08959        --> TTATGAAGAGTTTGAGAAGCTAAACACGGAAGTGTTAGGTGTCTCAGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- TTATGAAGAGTTTGAGAAGCTAAACACCGAAGTGTTAGGTGTCTCAGTCG  Raphanus sativus var. oleiformis
FD566476       <-- TTATGAAGAGTTTGAGAAGCTAAACACCGAAGTGTTAGGTGTCTCAGTCG  Raphanus sativus var. oleiformis
EX891164       <-- TTATGAGGAGTTTGAGAAGCTAAACACCGAAGTGTTAGGTGTCTCAGTCG  Raphanus sativus var. oleiformis
FD934507       <-- TTATGAAGAGTTTGAGAAGCTAAACACCGAAGTGCTAGGTGTCTCAGTCG  Raphanus sativus var. oleiformis
FD936749       <-- ..................................................  Raphanus sativus var. oleiformis
FD978601       --> TTATGAAGAGTTTGAGAAGCTAAACACGGAAGTGTTAGGTGTCTCAGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765430       --> TTATGAAGAGTTTGAGAAGCTAAACACGGAAGTGTTAGGTGTCTCAGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548170       --> TTATGAAGAGTTTGAGAAGCTAGACACGGAAGTGTTAGGTGTCTCAGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548752       --> TTATGAAGAGTTTGAGAAGCTAAACACGGAAGTGTTAGGTGTCTCAGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551668       --> TTATGAAGATTTTGAGAAGCTAAACACGGAAGTGTTAGGTGTCTCAGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916366       --> TTATGAAGAGTTTGAGAAGCTAAACACGGAAGTGTTAGGTGTCTCAGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562122       --> ..................................................  Raphanus sativus var. oleiformis

               551    -    601
UN08959        --> ACAGTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- AC-GTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCTGGA
FD566476       <-- AC-GTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCTGGA
EX891164       <-- ACAGTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCAGGA
FD934507       <-- ACAGTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCAGGA
FD936749       <-- ..................................................
FD978601       --> ACAGTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCAGGA
EX765430       --> ACAGTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCAGGA
EV548170       --> ACAGTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCAGGA
FD548752       --> ACAGTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGCCAGGA
FD551668       --> ACAGTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCAGGA
EY916366       --> ACAGTGTGTTCTCGCATCTTGCGTGGGTCCAAACAGACAGAAAGTCAGGA
FD562122       --> ..................................................

               601    -    651
UN08959        --> GGGCTCGGTGATCTGAACTACCCACTCGTCTCGGATATCACCAAATCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- GGGCTCGGTGATCTGAACTACCCACTCGTCTCGGATATCACCAAATCCAT
FD566476       <-- GGGCTCGGTGATCTGAACTACCCACTCGTCTCGGATATCACCAAATCCAT
EX891164       <-- GGGCTCGGTGATTTGAACTACCCACTCGTCTCGGATATCACCAAATCCAT
FD934507       <-- GGGCTCGGTGATCTGAACTACCCACTCGTCTCGGATATCACCAAATCCAT
FD936749       <-- .................................................t
FD978601       --> GGGCTCGGTGATCTGAACTACCCACTCGTCTCGGATATCACCAAATCCAT
EX765430       --> GGGCTCGGTGATCTGAACTACCCACTCGTCTCGGATATCACCAAATCCAT
EV548170       --> GGGCTCGGTGATCTGAACTACCCACTCGTCTCGGATATCACCAAATCCAT
FD548752       --> GGGCTCGGTGATCTGAACTACCCACTCGTCTCGGATATCACCAAATCCAT
FD551668       --> GAGCTCGGTGATCTGAACTACCCACTCGTCTCGGATATCACCAAATCCAT
EY916366       --> GGGCTCGGTGATCTGAACTACCCACTCGTCTCGGATATCACCAAATCCAT
FD562122       --> ..................................................

               651    -    701
UN08959        --> TTCAAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCATTGA-GA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- TTCTAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCATTGA-GA  Raphanus sativus var. oleiformis
FD566476       <-- TTCTAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCATTGA-GA  Raphanus sativus var. oleiformis
EX891164       <-- TTTTAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCATTGA-GA  Raphanus sativus var. oleiformis
FD934507       <-- TTCTAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCATTGA-GA  Raphanus sativus var. oleiformis
FD936749       <-- ttttAAATCGTTTGGAGTGTTCGTCCCTGATCAGGGCATTGCATTGA-GA  Raphanus sativus var. oleiformis
FD978601       --> TTCAAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCATTGA-GA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765430       --> TTCAAA-TCGTTTGGAGTGCTCATCCCTG.....................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548170       --> TTCAAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCATTGA-GA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548752       --> TTCAAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCATTGAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551668       --> TTCAAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCATTGA-GA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916366       --> TTCAAAATCGTTTGGAGTGCTCATCCCTGATCAGGGCATTGCATTGA-GA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562122       --> .................................GGGCATTGCATTGA-GA  Raphanus sativus var. oleiformis

               701    -    751
UN08959        --> GGGCTTTTCATCATCGACAAGGAAGGAGTCATCCAGCATTCCACCATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- GGGCTTTTCATCATCGACAAGGAAGGAGTCATCCAGCATTCCACCATCAA
FD566476       <-- GGGCTTTTCATCATCGACAAGGAAGGAGTCATCCAGCATTCCACCATCAA
EX891164       <-- GGGCTTTTCATCATCGACAAGGAAGGAGTCATCCAGCATTCCACCATCAA
FD934507       <-- GGGCTTTTCATCATCGACAAGGAAGGAGTCATCCAGCATTCCACCATCAA
FD936749       <-- GGGCTTTTCATCATCGACAAGGAAGGAGTCATCCAACATTCCACCATCAA
FD978601       --> GGGCTTTTCATCATCG..................................
EX765430       --> ..................................................
EV548170       --> GGGCTTTTCATCATCGACAAGGAAAGAGTCATCCAACATTCCACCATCAA
FD548752       --> GGGCTTTTCATCATCGAC................................
FD551668       --> GGGCTTTTCATCATCGACAAGGAAGGAGTCATCCAACATTCCACCATCAA
EY916366       --> GGGCTTTTCATCATCGACAAG-AAGGAGTCATCCAACATTCCACCATCAA
FD562122       --> GGGCTTTTCATCATCGACAAGGAAGGAGTCATCCAGCATTCCACCATCGA

               751    -    801
UN08959        --> CAACCTCGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- CAACCTCGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGG
FD566476       <-- CAACCTCGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGG
EX891164       <-- CAACCTCGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCCGG
FD934507       <-- CAACCTCGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGG
FD936749       <-- CAACCTCGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGG
FD978601       --> ..................................................
EX765430       --> ..................................................
EV548170       --> CAACCTCGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCC......
FD548752       --> ..................................................
FD551668       --> CAACCTCGGTATTGGCCGAAGCGTTGATGAGACA-TGAGA-CCCTCCAGG
EY916366       --> CAACCTCGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCT.....
FD562122       --> CAACCTCGGTATTGGCCGAAGCGTTGATGAGACAATGAGAACCCTCCAGG

               801    -    851
UN08959        --> CATTACAGTATGTTCAAGAAAACCCTGATGAGGTCTGCCCCGCGGGATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- CATTACAGTATGTTCAAGAAAACCCTGATGAGGTCTGCCCCGCGGGATGG
FD566476       <-- CATTACAGTATGTTCAAGAAAACCCTGATGAGGTCTGCCCCGCGGGATGG
EX891164       <-- CATTACAGTATGTTCAAGAAAACCCTGATGAGGTCTGCCCCGCGGGATGG
FD934507       <-- CATTACAGTATGTTCAAGAAAACCCTGATGAGGTCTGCCCCGCGGGATGG
FD936749       <-- CATTACAGTATGTTCAAGAAAACCCTGATGAGGTCTGCCCCGCGGGATGG
FD978601       --> ..................................................
EX765430       --> ..................................................
EV548170       --> ..................................................
FD548752       --> ..................................................
FD551668       --> CATTACAGTATGTTCA-G-AAACCCTGATGAG-TCTGCCCCGCGGGATGG
EY916366       --> ..................................................
FD562122       --> CATTACAGTATGTTCAAGAAAACCCTGATGAGGTCTGCCCCGCGGGATGG

               851    -    901
UN08959        --> AAGCCTGGGGAGAAATCGATGAAACCTGACCCCAAGCTCAGCAAAGAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- AAGCCTGGGGAGAAATCGATGAAACCTGACCCCAAGCTCAGCAAAGAGTA
FD566476       <-- AAGCCTGGGGAGAAATCGATGAAACCTGACCCCAAGCTCAGCAAAGAGTA
EX891164       <-- AAGCCTGGGGAGAAATCGATGAAACCTGACCCCAAGCTCAGCAAAGAGTA
FD934507       <-- AAGCCTGGGGAGAAATCGGTGAAACCTGACCCCAAGCTCAGCAAAGAGTA
FD936749       <-- AAGCCTGGGGAGAAATCGATGAAACCTGACCCCAAGCTCAGCAAAGAGTA
FD978601       --> ..................................................
EX765430       --> ..................................................
EV548170       --> ..................................................
FD548752       --> ..................................................
FD551668       --> A-G-CTGGGGAGAA-TCGAT..............................
EY916366       --> ..................................................
FD562122       --> AAGCCTGGGGAGAAATCGATGAAACCTGACCCCAAGCTCAGCAAAGAGTA

               901    -    951
UN08959        --> TTTTTCAGCTATTTAAGAGTCTTTCATATAAAACATATGTTCGGTGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- TTTTTCAGCTATTTAAGAGTCTTTCATATAAAACATATGTTCGGTGAAAA
FD566476       <-- TTTTTCAGCTATTTAAGAGTCTTTCATATAAAACATATGTTCGGTGAAAA
EX891164       <-- TTTTTCAGCTATTTAAGAGTCTTTCATATAAAACATATGTTCGGTGAAAA
FD934507       <-- TTTTTCAGCTATTTAAGAGTCTTTCATATAAAACATATGTTCGGTGAAAA
FD936749       <-- TTTTTCAGCTATTTAAGAGTCTTTCATATAAAACATATGTTCGGTGAAAA
FD978601       --> ..................................................
EX765430       --> ..................................................
EV548170       --> ..................................................
FD548752       --> ..................................................
FD551668       --> ..................................................
EY916366       --> ..................................................
FD562122       --> TTTTTCAGCTATTTAAGAGTCTTTCATATAAAACATATGTTCGGTGAAAA

               951    -   1001
UN08959        --> AGCAGAGGACATGTTTATCTTTTTCCTGTGTTGGAGAGCTCAGTTTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- AGCAGAGGACATGTTTATCTTTTTCCTGTGTTGGAGAGCTCAGTTTTTAT
FD566476       <-- AGCAGAGGACATGTTTATCTTTTTCCTGTGTTGGAGAGCTCAGTTTTTAT
EX891164       <-- AGCAGAGGACATGTTTATCTTTTTCCTGTGTTGGAGAGCTCAGTTTTTAT
FD934507       <-- AGCAGAGGACATGTTTATCTTTTTCCTGTGTTGGAGAGCTCAGTTTTTAT
FD936749       <-- AGCAGAGGACATGTTTATCTTTTTCCTGTGTTGGAGAGCTCAGTTTTTAT
FD978601       --> ..................................................
EX765430       --> ..................................................
EV548170       --> ..................................................
FD548752       --> ..................................................
FD551668       --> ..................................................
EY916366       --> ..................................................
FD562122       --> AGCAGAGGACATGTTTATCTTTTTCCTGTGTTGGAGAGCTCAGTTTTTAT

               1001   -   1051
UN08959        --> TTTTGCCAAGATAACATTTGCTTGAAAACTTTGCTTTGACTTCATTACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- TTTTGCCAAGACAACATTTGCTTGAAAACTTTGCTTTGACTTCATTACTT
FD566476       <-- TTTTGCCAAGACAACATTTGCTTGAAAACTTTGCTTTGACTTCATTACTT
EX891164       <-- TTTTGCCAAGATAACATTTGCTTGAAAACTTTGCTTTGACTTCATTACTT
FD934507       <-- TTTTGCCAAGATAACATTTGCTTGAAAACTTTGCTTTGACTTCATTACTT
FD936749       <-- TTTTGCCAAGATAACATTTGCTTGAAAACTTTGCTTTGACTTCATTACTT
FD978601       --> ..................................................
EX765430       --> ..................................................
EV548170       --> ..................................................
FD548752       --> ..................................................
FD551668       --> ..................................................
EY916366       --> ..................................................
FD562122       --> TTTTGCCAAGATAACATTTGCTTGAAAACTTTGCTTTGACTTCATTACTT

               1051   -   1101
UN08959        --> ATGTTTCTTCTGTGTGATTCTCCTCAAAAGTTGAATAAAAATAATGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- ATGTTTCTTCTGTGTGATTCTCCTCAAAAGTTGAATAAAAATAATGAAAT
FD566476       <-- ATGTTTCTTCTGTGTGATTCTCCTCAAAAGTTGAATAAAAATAATGAAAT
EX891164       <-- ATGTTTCTTCTGTGTGATTCTCCTCAAAAGTTGAATAAAAATAATGAAAT
FD934507       <-- ATGTTTCTTCTGTGTGATTCTCCTCAAAAGTTGAATAAAAATAATGAAAT
FD936749       <-- ATGTTTCTTCTGTGTGATTCTCCTCAAAAGTTGAATAAAAATAATGAAAT
FD978601       --> ..................................................
EX765430       --> ..................................................
EV548170       --> ..................................................
FD548752       --> ..................................................
FD551668       --> ..................................................
EY916366       --> ..................................................
FD562122       --> ATGTTTCTTCTGTGTGATTCTCCTCAAAAGTTGAATAAAAATAATGAAAT

               1101   -   1151
UN08959        --> TTATATGTTCCTCTATTTTTAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~
FD936024       <-- TTAT....................
FD566476       <-- TTAT....................
EX891164       <-- TTATATGct...............
FD934507       <-- TTAT....................
FD936749       <-- TTATATGTTCCTCTATTTTTAAGC
FD978601       --> ........................
EX765430       --> ........................
EV548170       --> ........................
FD548752       --> ........................
FD551668       --> ........................
EY916366       --> ........................
FD562122       --> TT......................