1      -     51
UN09040        --> GGATTATAGGTTTTGCAGCTGCTGCTGTTTACAGAGAGTCGCATCGAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- GGATTATAGGTTTTGCAGCTGCTGCTGTTTACAGAGAGTCGCATCGAGGT
EX766735       <-- .....................ggGCTGTTTACAGAGAGTCGCATCGAGGT
EW738058       <-- ..................................................
EX748744       --> GGATTATAGGTTTTGCAGCTGCTGCTGTTTACAGAGAGTCGCATCGAGGT
EX762499       --> .....................ggGCTGTTTACAGAGAGTCGCATCGAGGT
FD966127       --> ........................ggGTTTACAGAGAGTCGCATCGAGGT
FD549604       --> ................................gGAGAGTCGCATCGAGGT
EX748580       --> ..................................................

               51     -    101
UN09040        --> TCTGATCTTAAGGAAGCAGCAGAAATGGCGGTACCGTTGCTAACGAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- TCTGATCTTAAGGAAGCAGCAGAAATGGCGGTACCGTTGCTAACGAAGAA  Raphanus raphanistrum subsp. maritimus
EX766735       <-- TCTGATCTTA-GGAAGCAGCAGAAATGGCGGTACCGTTGCTAACGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738058       <-- ................................................AA  Raphanus sativus cv Rat-Tail Radish #3870
EX748744       --> TCTGATCTTAAGGAAGCAGCAGAAATGGCGGTACCGTTGCTAACGAAGAA  Raphanus raphanistrum subsp. maritimus
EX762499       --> TCTGATCTTA-GGAAGCAGCAGAAATGGCGGTACCGTTGCTAACGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966127       --> TCTGATCTTGAGGAAGCAGCAGAAATGGCGGTACCGTTGCTAACGAAGAA  Raphanus raphanistrum subsp. maritimus
FD549604       --> TCTGATCTTA-GGAAGCAGCAGAAATGGCGGTACCGTTGCTAACGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748580       --> ......CTTAAGGAAGCAGCAGAAATGGCGGTACCGTTGCTAACGAAGAA  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN09040        --> GGTGGTGAAGAAGAGGTCTGCCAAGTTCATCAGACCCCAGAGCGACCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- GGTGGTGAAGAAGAGGTCTGCCAAGTTCATCAGACCCCAGAGCGACCGTA
EX766735       <-- GGTGGTGAAGAAGAGGTCTGCCAAGTTCATCAGACCCCAGAGCGACCGTA
EW738058       <-- GGTGGTGAAGAAGAGGTTTGCCAATTTCATCAGACCCCAGAGCGACCGTA
EX748744       --> GGTGGTGAAGAAGAGGTCTGCCAAGTTCATCAGACCCCAGAGCGACCGTA
EX762499       --> GGTGGTGAAGAAGAGGTCTGCCAAGTTCATCAGACCCCAGAGCGACCGTA
FD966127       --> GGTGGTGAAGAAGAGGTCTGCCAAGTTCATCAGACCCCAGAGCGACCGTA
FD549604       --> GGTGGTGAAGAAGAGGTCTGCCAAGTTCATCAGACCCCAGAGCGACCGTA
EX748580       --> GGTGGTGAAGAAGAGGTCTGCCAAGTTCATCAGACCCCAGAGCGACCGTA

               151    -    201
UN09040        --> GAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATTGATTCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- GAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATCGATTCAAGG  Raphanus raphanistrum subsp. maritimus
EX766735       <-- GAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATTGATTCAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738058       <-- GAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATTGATTCAAGG  Raphanus sativus cv Rat-Tail Radish #3870
EX748744       --> GAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATCGATTCAAGG  Raphanus raphanistrum subsp. maritimus
EX762499       --> GAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATTGATTCAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966127       --> GAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATCGATTCAAGG  Raphanus raphanistrum subsp. maritimus
FD549604       --> GAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATTGATTCAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748580       --> GAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATCGATTCAAGG  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN09040        --> GTTAGGAGAAAGTTCAAGGGTGTGACATTGATGCCCAATGTGGGTTACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- GTTAGGA-AAAGTTCAAGGGTGTGACATTGATGCCCAATGTGGGTTACGG
EX766735       <-- GTTAGGAGAAAGTTCAAGGGTGTGACATTGATGCCCAATGTGGGTTACGG
EW738058       <-- GTTAGGAGAAAGTTCAAGGGTGTGACATTGATGCCC..............
EX748744       --> GTTAGGA-AAAGTTCAAGGGTGTGACATTGATGCCCAATGTGGGTTACGG
EX762499       --> GTTAGGAGAAAGTTCAAGGGTGTGACATTGATGCCCAATGTGGGTTACGG
FD966127       --> GTTAGGAGAAAGTTCAAGGGTGTGACATTGATGCCCAATGTGGGTTACGG
FD549604       --> GTTAGGAGAAAGTTCAAGGGTGTGACATTGATGCCCAATGTGGGTTACGG
EX748580       --> GTTAGGAGAAAGTTCAAGGGTGTGACATTGATGCCCAATGTGGGTTACGG

               251    -    301
UN09040        --> ATCAGACAAGAAGACACGTCACTACCTCCCCAACGGGTTCAAGAAGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- ATCAGACAAGAAGACACGTCACTACCTCCCCAACGGGTTCAAGAAGTTTG  Raphanus raphanistrum subsp. maritimus
EX766735       <-- ATCAGACAAGAAGACACGTCACTACTTCCCCAACGGGTTCAAGAAGTTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738058       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX748744       --> ATCAGACAAGAAGACACGTCACTACCTCCCCAACGGGTTCAAGAAGTTTG  Raphanus raphanistrum subsp. maritimus
EX762499       --> ATCAGACAAGAAGACACGTCACTACTTCCCCAACGGGTTCAAGAAGTTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966127       --> ATCAGACAAGAAGACACGTCACTACCTCCCCAACGGGTTCAAGAAGTTTG  Raphanus raphanistrum subsp. maritimus
FD549604       --> ATCAGACAAGAAGACACGTCACTACCTCCCCAACGGGTTCAAGAAGTTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748580       --> ATCAGACAAGAAGGCACGTCACTACCTCCCCAACGGGTTCAAGAAGTTTG  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN09040        --> TTGTGCACAACACGAGTGACCTCGAGCTGCTGATGATGCACAACAGGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- TTGTGCACAACACGAGTGACCTCGAGCTGCTGATGATGCACAACAGGACG  Raphanus raphanistrum subsp. maritimus
EX766735       <-- TCGTGCACAACACGAGTGACCTCGAGCTGCTGATGATGCACAACAGGACG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738058       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX748744       --> TTGTGCACAACACGAGTGACCTCGAGCTGCTGATGATGCACAACAGGACG  Raphanus raphanistrum subsp. maritimus
EX762499       --> TCGTGCACAACACGAGTGACCTCGAGCTGCTGATGATGCACAACAGGACG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966127       --> TTGTGCACAACACGAGTGACCTCGAGCTGCTGATGATGCACAACAGGACG  Raphanus raphanistrum subsp. maritimus
FD549604       --> TCGTGCACAACACGAGTGACCTCGAGCTGCTGATGATGCACAACAGGACG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748580       --> TTGTGCACAACACGAGTGACCTCGAGCTGCTGATGATGCACAACAGGACG  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN09040        --> TACTGCGCGGAGATTGCACACAACGTATCGACCAAGAAGAGGAAGGCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- TACTGCGCGGAGATTGCACACAACGTATCGACCAAGAAGAGGAAGGCTAT  Raphanus raphanistrum subsp. maritimus
EX766735       <-- TACTGCGCGGAGATTGCCCACAACGTTTCGACAAAGAAGAGGAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738058       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX748744       --> TACTGCGCGGAGATTGCACACAACGTATCGACCAAGAAGAGGAAGGCTAT  Raphanus raphanistrum subsp. maritimus
EX762499       --> TACTGCGCGGAGATTGCCCACAACGTTTCGACAAAGAAGAGGAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966127       --> TACTGCGCGGAGATTGCACACAACGTATCGACCAAGAAGAGGAAGGCTAT  Raphanus raphanistrum subsp. maritimus
FD549604       --> TACTGCGCGGAGATTGCCCACAACGTTTCGACAAAGAAGAGGAAGGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748580       --> TACTGCGCGGAGATTGCACACAACGTATCGACCAAGAAGAGGAAGGCTAT  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN09040        --> TGTGGAGAGAGCTTCTCAGTTGGATATTGTTGTTACCAACAGGCTTGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- TGTGGAGAGAGCTTCTCAGTTGGATATTGTTGTTACCAACAGGCTTGCTA  Raphanus raphanistrum subsp. maritimus
EX766735       <-- TGTGGAGAGAGCTTCGCAGTTGGATATTGTTGTTACCAATAGGCTTGCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738058       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX748744       --> TGTGGAGAGAGCTTCTCAGTTGGATATTGTTGTTACCAACAGGCTTGCTA  Raphanus raphanistrum subsp. maritimus
EX762499       --> TGTGGAGAGAGCTTCGCAGTTGGATATTGTTGTTACCAATAGGCTTGCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966127       --> TGTGGAGAGAGCTTCTCCGTTGGATATTGTTGTTACCAACAGGCTTGCTA  Raphanus raphanistrum subsp. maritimus
FD549604       --> TGTGGAGAGAGCTTCGCAGTTGGATATTGTTGTTACCAATAGGCTTGCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748580       --> TGTGGAGAGAGCTTCTCAGTTGGATATTGTTGTTACCAACAGGCTTGCTA  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN09040        --> GGCTCCGTAGCCAAGAAGACGAGTGAAGAAGCAAAGGCGTTTGAAGTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- GGCTCCGTAGCCAAGAAGACGAGTGAAGAAGCAAAGGCGTTTGAAGTATT  Raphanus raphanistrum subsp. maritimus
EX766735       <-- GGCTCCGTAGCCAAGAAGACGAGTGAAGAAGCAAAGGCGTTTGAAATATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738058       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX748744       --> GGCTCCGTAGCCAAGAAGACGAGTGAAGAAGCAAAGGCGTTTGAAGTATT  Raphanus raphanistrum subsp. maritimus
EX762499       --> GGCTCCGTAGCCAAGAAGACGAGTGAAGAAGCAAAGGCGTTTGAAATATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966127       --> GGCTCCGTAGCCAAGAAGACGAGTGAAGAAGCAAAGGCGTTTGAAGTATT  Raphanus raphanistrum subsp. maritimus
FD549604       --> GGCTCCGTAGCCAAGAAGACGAGTGAAGAAGCAAAGGCGTTTGAAATATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748580       --> GGCTCCGTAGCCAAGAAGACGAGTGAAGAAGCAAAGGCGTTTGAAGTATT  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN09040        --> AAGTTTGTTTCTGTGGTTTGTTTGCATTTCTCTTTTTGTAAGACGATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- AAGTTTGTTTCTGTGGTTTGTTTGCATTTCTCTTTTTGTAAGACGATTTT  Raphanus raphanistrum subsp. maritimus
EX766735       <-- AAGTTTGTTTCT--GGTTTGTTTGCATTTCTCTTTTTGTAAGACGATTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738058       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX748744       --> AAGTTTGTTTCTGTGGTTTGTTTGCATTTCTCTTTTTGTAAGACGATTTT  Raphanus raphanistrum subsp. maritimus
EX762499       --> AAGTTTGTTTCTG--GTTTGTTTGCATTTCTCTTTTTGTAAGACGATTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966127       --> AAGTTTGTTTCTGTGGTTTGTTTGCATTTCTCTTTTTGTAAGACGATTTT  Raphanus raphanistrum subsp. maritimus
FD549604       --> AAGTTTGTTTCTG--GTTTGTTTGCATTTCTCTTTTTGTAAGACGATTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748580       --> AAGTTTGTTTCTGTGGTTTGTTTGCATTTCTCTTTTTGTAAGACGATTTT  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN09040        --> TGTTTACTGTTTGTGTTTGCAATCTACAAACATGAGTTTTGGTATTAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- TGTTTACTGTTTGTGTTTGCAATCTACAAACATGAGTTTTGGTATTAGAC
EX766735       <-- TGTTTACTGTTTGTGTTTGCAATCTACAAACATGAGTTTTGGTATCAGAC
EW738058       <-- ..................................................
EX748744       --> TGTTTACTGTTTGTGTTTGCAATCTACAAACATGAGTTTTGGTATTAGAC
EX762499       --> TGTTTACTGTTTGTGTTTGCAATCTACAAACATGAGTTTTGGTATCAGAC
FD966127       --> TGTTTACTGTTTGTGTTTGCAATCTACAAACATGAGTTTTGGTATTAGA.
FD549604       --> TGTTTACTGTTTGTGTTTGCAATC..........................
EX748580       --> TGTTTACTGTTTGTGTTTGCAATCTACAAACATGAGTTTTGGTATTAGAC

               601    -    651
UN09040        --> AAACATTGCTAAGACCGTTCCTATACTATTTCAGTTTTAGTATTTCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX752602       <-- AAACATTGCTAAGACCGTTCCTAAACGATTTCAGTTTTAGTATTTCAG.
EX766735       <-- AAACATTGCTAAGACCGTTCCTATACTATTTCAGTTTTAGc........
EW738058       <-- .................................................
EX748744       --> AAACATTGCTAAGACCGTTCCTAAACGATTTCAGTTTTAGTATTTCAGT
EX762499       --> AAACATTGCTAAGACCGTTCCTATACTATTTCAGTTTTAGc........
FD966127       --> .................................................
FD549604       --> .................................................
EX748580       --> AAACATTGCT.......................................