1      -     51
UN09140        --> AGGTACGAGAAACAAAATTATCCAGGAAAATTAATGAGCTCTCGAGCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- ..................................................
FY447892       <-- ..................................................
EY911512       <-- ..................................................
FD944246       <-- ..................................................
FD948468       --> AGGTACGAGAAACAAAATTATCCAGGAAAATTAATGAGCTCTCGAGCTCG
FD571563       --> ..................................................
FD981017       --> ..................................................
EX765995       --> ..................................................

               51     -    101
UN09140        --> ATTTTTGTTCTAAAAAATTACATTCTCAAATCGACTAAAGGGTTTGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- ..................................................
FY447892       <-- ..................................................
EY911512       <-- ..................................................
FD944246       <-- ..................................................
FD948468       --> ATTTTTGTTCTAAAAAATTACATTCTCAAATCGACTAAAGGGTTTGCTCT
FD571563       --> .............................gggGACTAAAGGGTTTGCTCT
FD981017       --> ..................................................
EX765995       --> ..................................................

               101    -    151
UN09140        --> TCTTTCTGGAGCAATAATAATGGCGTGGAACGTGTTCAAGTTCTGCACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- ..................................................
FY447892       <-- ..................................................
EY911512       <-- ..................................................
FD944246       <-- ..................................................
FD948468       --> TCTTTCTGGAGCAATAATAATGGCGTGGAACGTGTTCAAGTTCTGCACAG
FD571563       --> TCTTTCTGGAGCAATAATAATGGCGTGGAACGTGTTCAAGTTCTGCACAG
FD981017       --> ..................................................
EX765995       --> ..................................................

               151    -    201
UN09140        --> CACTTTGGGCGTTGGGTTCGATCATGATCCTAGTCGTAATCGGGATCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- ..................................................
FY447892       <-- ..................................................
EY911512       <-- ..................................................
FD944246       <-- ..................................................
FD948468       --> CACTTCGGGCGTTGGGTTCGATCATGATCCTAGTCGTAATCGGGATCGTC
FD571563       --> CACTTTGGGCGTTGGGTTCGATCATGATCCTAGTCGTAATCGGGATCGTC
FD981017       --> .........................................GGGATCGTC
EX765995       --> ..................................................

               201    -    251
UN09140        --> GGATTCTCATACTACGCCCTTGTCGTCGCCAATTACGGACCTTCTCTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- ..................................................
FY447892       <-- ..................................................
EY911512       <-- ..................................................
FD944246       <-- ..................................................
FD948468       --> GGATTCTCATACTACGCCCTTGTCGTCGCCAATTACGGACCTTCTCTGTT
FD571563       --> GGATTCTCATACTACGCCCTTGTCGTCGCCAATTACGGACCTTCTCTGTT
FD981017       --> GGATTCACATACTACGCCCTTGTCGTCGCCAATTACGGACCTTCTCTATT
EX765995       --> ......................TCGTCGCCAATTACGGACCTTCTCTATT

               251    -    301
UN09140        --> CCTCGGTGGCTTCGATTCATTACTATCTCTTCTCGTCTTATCCCTCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- ..................................................
FY447892       <-- ..................................................
EY911512       <-- ..................................................
FD944246       <-- ..................................................
FD948468       --> CCTCGGTGGCTTCGATTCATTACTATCTCTTCTCGTCTTAGCCCTCTTTC
FD571563       --> CCTCGGTGGCTTCGATTCATTACTATCTCTTCTCGTCTTAGCCCTCTTTC
FD981017       --> CCTCGGTGGCTTCGATTCATTACTATCTCTTCTCGTCTTATCCCTCTTTC
EX765995       --> CCTCGGTGGCTTCGATTCATTACTATCTCTTCTCGTCTTATCCCTCTTTC

               301    -    351
UN09140        --> ACTTTCTGCTTATAATGTTACTGTGGAGTTATTTCTCTGTTGTTGTGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- ..................................................
FY447892       <-- ..................................................
EY911512       <-- ..................................................
FD944246       <-- ..................................................
FD948468       --> ACTTTCTGCTTATAATGTTACTGTGGAGTTATTTCTCTGTTGTTGTGACG
FD571563       --> ACTTTCTGCTTATAATGTTACTGTGGAGTTATTTCTCTGTTGTTGTGACG
FD981017       --> ACTTTCTGCTTATAATGTTACTGTGGAGTTATTTCTCTGTTGTTGTGACG
EX765995       --> ACTTTCTGCTTATAATGTTACTGTGGAGTTATTTCTCTGTTGTTGTGACG

               351    -    401
UN09140        --> GACCCTGGTGGTGTTCCACCGGGGTGGAGGCCGGAACTAGACGTAGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- .....................................TAGACGTAGAAAA
FY447892       <-- ..................................................
EY911512       <-- ..................................................
FD944246       <-- ..................................................
FD948468       --> GACCCTGGTGGTGTTCCACCGGGGTGGAGGCCGGAACTAGACATAGAGAA
FD571563       --> GACCCTGGTGGTGTTCCACCGGGGTGGAGGCCGGAACTAGACATAGAGAA
FD981017       --> GACCCTGGTGGTGTTCCACCGGGATGGAGGCCGGAACTAGACGTAGAAAA
EX765995       --> GACCCTGGTGGTGTTCCACCGGGATGGAGGCCGGAACTAGACGTAGAAAA

               401    -    451
UN09140        --> AAGCGATGGAACCCAAGAGTACACTTCACTTACGGTTGGAGATTCCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- AAGCGATGGAACCCAAGAGTACACTTCACTTACGGTTGGAGATTCCTCCT
FY447892       <-- ...CGATGGAACCCAAGAGTACACTTCACTTACGGTTGGAGATTCCTCCT
EY911512       <-- ..................................................
FD944246       <-- ..................................................
FD948468       --> AAGCGATGGAACCCAAGAGTACACTTCACTTACGGTTGGAGATTCCTCCT
FD571563       --> AAGCGATGGAACCCAAGAGTACACTTCACTTACGGTTGGAGATTCCTCCT
FD981017       --> AAGCGATGGAACCCAAGAGTACACTTCACTTACGGTTGGAGATTCCTCCT
EX765995       --> AAGCGATGGAACCCAAGAGTACACTTCACTTACGGTTGGAGATTCCTCCT

               451    -    501
UN09140        --> CTCATATTGTAAGATACTGCCGCAAGTGCAATCAGTATAAACCTCC-TCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- CTCATATTGTAAGATACTGCCGCAAGTGCAATCAGTATAAACCTCC-TCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY447892       <-- CTCATATCGTAAGATACTGCCGCAAGTGCAATCAGTATAAACCTCC-TCG  Raphanus sativus cv GSK3-1
EY911512       <-- ...............................................tct  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944246       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948468       --> CTCATATCGTAAGATACTGCCGCAAGTGCGATCAGTATAAACCTCC-TCG  Raphanus sativus cv Early Scarlet Globe
FD571563       --> CTCATATCGTAAGATACTGCCGCAAGTGCAATCAGTATAAACCTCC-TCG  Raphanus sativus cv Early Scarlet Globe
FD981017       --> CTCATATTGTAAGATACTGCCGCAAGTGCAATCAGTATAAACCTCC-TCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765995       --> CTCATATTGTAAGATACTGCCGCAAGTGCAATCAGTATAAACCTCCCTCG  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN09140        --> TTCTCACCACTGTTCTGTCTGTGGAAGATGCATTCTAAAGATGGACCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- TTCTCACCACTGTTCTGTCTGTGGAAGATGCATTCTAAAGATGGACCATC
FY447892       <-- TTCTCACCACTGTTCTGTCTGTGGAAGATGCATTCTAAAGATGGACCATC
EY911512       <-- TTCTCACCACTGTTCTGTCTGTGGAAGATGCATTCTAAAGATGGACCATC
FD944246       <-- ......CCACTGTTCTGTCTGTGGAAGATGCATTCTAAAGATGGACCATC
FD948468       --> TTCTCACCACTGTTCTGTCTGTGGAAGATGCATTCTAAAGATGGACCATC
FD571563       --> TTCTCACCACTGTTCTGTCTGTGGAAGATGCATTCTAAAGATGGACCATC
FD981017       --> TTCTCACCACTGTTCTGTCTGTGGAAGATGCATTCTAAAGATGGACCATC
EX765995       --> TTCTCACCACTGTTCTGTCTGTGGAAGATG....................

               551    -    601
UN09140        --> ACTGTGTTTGGGTTGTGAATTGTGTTGGGGCAAAGAACTACAAGTCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- ACTGCGTTTGGGTTGTGAATTGTGTTGGGGCAAAGAACTACAAGTCTTTT
FY447892       <-- ACTGTGTTTGGGTTGTGAATTGTGTTGGGGCAAAGAACTACAAGTCTTTT
EY911512       <-- ACTGTGTTTGGGTTGTGAATTGTGTTGGGGCAAAGAACTACAAGTCTTTT
FD944246       <-- ACTGTGTTTGGGTTGTGAATTGTGTTGGGGCAAAGAACTACAAGTCTTTT
FD948468       --> ACTGTGTTTGGGTTGTGAATTGTGTTGGGGCAAAGAACTACAAGTCTTTT
FD571563       --> ACTGTGTTTGGGTTGTGAATTGTGTTGGGGCAAAGAACTACAAGTCTTTT
FD981017       --> ACTGCGTTTGGGTTGTGAATTGTGTTGGGGCAAAGAACTACAAGTCTTTT
EX765995       --> ..................................................

               601    -    651
UN09140        --> CTCCTCTTCTTGTTTTACACATTTCTTGAGACAACGGTGGTTGCAATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- CTCCTCTTCTTGTTTTACACATTTCTTGAGACAACGGTGGTTGCAATATC
FY447892       <-- CTCCTCTTCTTGTTTTACACATTTCTTGAGACAACGGTGGTTGCAATATC
EY911512       <-- CTCCTCTTCTTGTTTTACACATTTCTTGAGACAACGGTGGTTGCAATATC
FD944246       <-- CTCCTCTTCTTGTTTTACACATTTCTTGAGACAACGGTGGTTGCAATATC
FD948468       --> CTCCTCTTCTTGTTTTACACATTTCTTGAGACAACGGTGGTTGCAATATC
FD571563       --> CTCCTCTTCTTGTTTTACACATTTCTTGAGACAACGGTGGTTGCAATATC
FD981017       --> CTCCTCTTCTTGTTTTACACATTTCTTGAGACAACGGTGGTTGCAATATC
EX765995       --> ..................................................

               651    -    701
UN09140        --> ACTGTTTCCGGTTTTCCTGGTATTCTTTACCGATGGAGATAGTGATGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- ACTGTTTCCAGTTTTCCTCGTATTCTTTAACGATGGAGATAGTGACGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY447892       <-- ACTGTTTCCGGTTTTCCTGGTATTCTTTACCGATGGAGATAGTGATGTTA  Raphanus sativus cv GSK3-1
EY911512       <-- ACTGTTTCCAGTTTTCCTCGTATTCTTTAACGATGGAGATAGTGACGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944246       <-- ACTGTTTCCGGTTTTCCTGGTATTCTTTACCGATGGAGATAGTGATGTTA  Raphanus sativus cv Early Scarlet Globe
FD948468       --> ACTGTTTCCCGTTTTCCTGGTATTCTTTACCGATGGAGATAGTGATGTTA  Raphanus sativus cv Early Scarlet Globe
FD571563       --> ACTGTTTCCGGTTT-CCTGGTATTCTTTACCGATGGAGATAGTGATGTTA  Raphanus sativus cv Early Scarlet Globe
FD981017       --> ACTGTTTCCAGTTTTCCTCGTATTCTTTAACGATGGAGATAGTGACGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765995       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN09140        --> CAGTATCACCAGGAAGCCTAGCAGCCACCTTTGTTGCATTTGTGTTGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- CAGTATCACCAGGAAGCCTAGCAGCCACCTTTGTTGCATTTGTGTTGAAC
FY447892       <-- CAGTATCACCAGGAAGCCTAGCAGCCACCTTTGTTGCATTTGTGTTGAAC
EY911512       <-- CAGTATCACCAGGAAGCCTAGCAGCCACCTTTGTTGCATTTGTGTTGAAC
FD944246       <-- CAGTATCACCAGGAAGCCTAGCAGCCACCTTTGTTGCATTTGTGTTGAAC
FD948468       --> CAGTATCAC.........................................
FD571563       --> CAGTATCACCAGGAAGCCTAGCAGCCACCTTTGTTGCATTTGTGTTGAAC
FD981017       --> CAGTATCACCAGGAAGCCTAGCAGCCACCTTTGTTGCATTTGTGTTGAAC
EX765995       --> ..................................................

               751    -    801
UN09140        --> ATAACGTTTGCGCTAAGTGTCCTGGGCTTCCTAATCATGCACATAATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- ATAACGTTTGCGCTAAGTGTCCTCGGCTTCCTAATCATGCACATAATGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY447892       <-- ATAACGTTTGCGCTAAGTGTACTGGGCTTCCTAATCATGCACATAATGTT  Raphanus sativus cv GSK3-1
EY911512       <-- ATAACGTTTGCGCTAAGTGTCCTCGGCTTCCTAATCATGCACATAATGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944246       <-- ATAACGTTTGCGCTAAGTGTACTGGGCTTCCTAATCATGCACATAATGTT  Raphanus sativus cv Early Scarlet Globe
FD948468       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD571563       --> ATAACGTTTGCGCTAAGTGTACTGGGCTTCCTAATCATGCACATAATGTT  Raphanus sativus cv Early Scarlet Globe
FD981017       --> ATAACGTTTGCGCTAAGTGTCCTCGGCTTCCTAATCATGCACATAATGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX765995       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN09140        --> GGTCATGCGTAACACCACAACTATTGAGGCATATGAGAAGCATACAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- GGTCATGCGTAACACCACAACTATTGAGGCATATGAGAAGCATACAGCTC
FY447892       <-- GGTCGTGCGTAACACCACAACTATTGAGGCATATGAGAAGCATACAGCTC
EY911512       <-- GGTCATGCGTAACACCACAACTATTGAGGCATATGAGAAGCATACAGCTC
FD944246       <-- GGTCGTGCGTAACACCACAACTATTGAGGCATATGAGAAGCATACAGCTC
FD948468       --> ..................................................
FD571563       --> G.................................................
FD981017       --> GGTCATGCGTAACACCACAAC.............................
EX765995       --> ..................................................

               851    -    901
UN09140        --> CTAACTCTCCTTATAACATTGGTCGTAAGCAAAACTTTGAACAGGTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- CTAACTCTCCTTATAACATTGGTCGTAAGCAAAACTTTGAACAGGTTTTT
FY447892       <-- CTAACTCTCCTTATAACATTGGTCGTAAGCAAAACTTTGAACAGGTTTTT
EY911512       <-- CTAACTCTCCTTATAACATTGGTCGTAAGCAAAACTTTGAACAGGTTTTT
FD944246       <-- CTAACTCTCCTTATAACATTGGTCGTAAGCAAAACTTTGAACAGGTTTTT
FD948468       --> ..................................................
FD571563       --> ..................................................
FD981017       --> ..................................................
EX765995       --> ..................................................

               901    -    951
UN09140        --> GGAAGGGATAAACTGTATTGGTTCGTGCCACTGTACACAGAAGACGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- GGAAGGGATAAACTGTATTGGTTCGTGCCACTGTACACAGAAGACGATAT
FY447892       <-- GGAAGGGATAAACTGTATTGGTTCGTGCCACTGTACACAGAAGACGATAT
EY911512       <-- GGAAGGGATAAACTGTATTGGTTCGTGCCACTGTACACAGAAGACGATAT
FD944246       <-- GGAAGGGATAAACTGTATTGGTTCGTGCCACTGTACACAGAAGACGATAT
FD948468       --> ..................................................
FD571563       --> ..................................................
FD981017       --> ..................................................
EX765995       --> ..................................................

               951    -   1001
UN09140        --> GAAAAGGATGCCAGCACTTCGAGGGTTAGACTTCACGAGCAGGTCTGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- GAAAAGGATGCCAGCACTTCGAGGGTTAGACTTCACGAGCAGGTCTGAGG
FY447892       <-- GAAAAGGATGCCAGCACTTCGAGGGTTAGACTTCACGAGCAGGTCTGAGG
EY911512       <-- GAAAAGGATGCCAGCACTTCGAGGGTTAGACTTCACGAGCAGGTCTGAGG
FD944246       <-- GAAAAGGATGCCAGCACTTCGAGGGTTAGACTTCACGAGCAGGTCTGAGG
FD948468       --> ..................................................
FD571563       --> ..................................................
FD981017       --> ..................................................
EX765995       --> ..................................................

               1001   -   1051
UN09140        --> AGGAGTCTGAGCCGCTTCAGTCTCTATGACGTTAAGCTTCAAACTTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- ---AGTTTGAGCCGCTTCAGTCTCTATGACGTTAAGCTTCAAACTTTTGG
FY447892       <-- AGGAGTCTGAGCCGCTTCAGTCTCTATGACGTTAAGCTTCAAACTTTGGG
EY911512       <-- ---AGTCTGAGCCGCTTCAGTCTCTATGACGTTAAGCTTCAAACTTTTGG
FD944246       <-- AGGAGTCTGAGCCGCTTCAGTCTCTATGACGTTAAGCTTCAAACTTTGGG
FD948468       --> ..................................................
FD571563       --> ..................................................
FD981017       --> ..................................................
EX765995       --> ..................................................

               1051   -   1101
UN09140        --> GAATGGGTCTCTGCTTTTGTGTATGTATCATTAATGTCTTTGTGTATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- GAATGGGTCTCTGCTTTTGTGTATGTATCATTAATGTCTTTGTGTATTAA
FY447892       <-- GAATGGGTCTCTGCTTTTGTGTATGTATCATTAATGTCTTTGTGTATTAA
EY911512       <-- GAATGGGTCTCTGCTTTTGTGTATGTATCATTAATGTCTTTGTGTATTAA
FD944246       <-- GAATGGGTCTCTGCTTTTGTGTATGTATCATTAATGTCTTTGTGTATTAA
FD948468       --> ..................................................
FD571563       --> ..................................................
FD981017       --> ..................................................
EX765995       --> ..................................................

               1101   -   1151
UN09140        --> AAAGATCAATGCTTCTTTTATTGAATTTGATTCTTCGTGTAAAGAAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- AAAGATCAATGCTTCTTTTATTGAAT---T-GCTTCGTGTAAAGAAAATA
FY447892       <-- AAAGATCAATGCTTCTTTTATTGAATTTGATTCTTCGTGTAAAGAAAATA
EY911512       <-- AAAGATCAATGCTTCTTTTATTGAAC---T-GCTTCGTGTAAAGAAAATA
FD944246       <-- AAAGATCAATGCTTCTTTTATTGAATTTGATTCTTCGTGT..........
FD948468       --> ..................................................
FD571563       --> ..................................................
FD981017       --> ..................................................
EX765995       --> ..................................................

               1151   -   1201
UN09140        --> CTCAAACTTTTTGCGTTGCATACATAAATGATATTCCTCCTCATTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD976812       <-- CTCAAACTTTTTGCGTTGCATACATAAATGATATTCCTCCTC......
FY447892       <-- CTCAAACTTTTTGCGTTGCATACATAAATGATATTCCTCCTCATTCTC
EY911512       <-- CTCAAACTTTTTGCGTTGCATACATAAATGATATTCCTCCTC......
FD944246       <-- ................................................
FD948468       --> ................................................
FD571563       --> ................................................
FD981017       --> ................................................
EX765995       --> ................................................