1      -     51
UN09142        --> GATCGTTCTCTTCTAAAGGAGAGGCTGCTAAGGATATGGAGATTGATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- ..................................................
EW727435       <-- ..................................................
FD974660       <-- ..................................................
EW722488       --> GATCGTTCTCTTCTAAAGGAGAGGCTGCTAAGGATATGGAGATTGATTCT
EW722577       --> GATCGTTCTCTTCTAAAGGAGAGGCTGCTAAGGATATGGAGATTGATTCT
EV552489       --> ..................................................
FD568554       --> ..................................................
FD978406       --> ..................................................

               51     -    101
UN09142        --> GAGAAGACTGATCGGTTGTGGGTGGACCCTGCTTCTTGCTGCTATGCGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- ..................................................
EW727435       <-- ..................................................
FD974660       <-- ..................................................
EW722488       --> GAGAAGACTGATCGGTTGTGGGTGGACCCTGCTTCTTGCTGCTATGCGCT
EW722577       --> GAGAAGACTGATCGGTTGTGGGTGGACCCTGCTTCTTGCTGCTATGCGCT
EV552489       --> ..................................................
FD568554       --> ..................................................
FD978406       --> ..................................................

               101    -    151
UN09142        --> TTATTCCAAGTTGGATGCTGATAAGGTCCTCTTGCAACCATCTCCTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- ..................................................
EW727435       <-- ..................................................
FD974660       <-- ..................................................
EW722488       --> TTATTCCAAGTTGGATGCTGATAAGGTCCTCTTGCAACCATCTCCTCTCT
EW722577       --> TTATTCCAAGTTGGATGCTGATAAGGTCCTCTTGCAACCATCTCCTCTCT
EV552489       --> ..................................................
FD568554       --> ..................................................
FD978406       --> ..................................................

               151    -    201
UN09142        --> CACTCCCAAAAGCCTTAAAGAACCCTGTTGAGCTCGAAGGACTCAAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- ..................................................
EW727435       <-- ..................................................
FD974660       <-- ..................................................
EW722488       --> CACTCCCAAAAGCCTTAAAGAACCCTGTTGAGCTCGAAGGACTCAAGAAA
EW722577       --> CACTCCCAAAAGCCTTAAAGAACCCTGTTGAGCTCGAAGGACTCAAGAAA
EV552489       --> ..................................................
FD568554       --> ..................................................
FD978406       --> ..................................................

               201    -    251
UN09142        --> GCACATGTTCGTGATGGTGCAGCTGTTGTCCAGTTCCTTGTTTGGCTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- ..................................................
EW727435       <-- ..................................................
FD974660       <-- ..................................................
EW722488       --> GCACATGTTCGTGATGGTGCAGCTGTTGTCCAGTTCCTTGTTTGGCTCGA
EW722577       --> GCACATGTTCGTGATGGTGCAGCTGTTGTCCAGTTCCTTGTTTGGCTCGA
EV552489       --> ..................................................
FD568554       --> ..................................................
FD978406       --> ..................................................

               251    -    301
UN09142        --> TCAACAGGTGCAGTAGCTTTATGGTGCATCTGGATACTTCATGGAAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- ..................................................
EW727435       <-- ..................................................
FD974660       <-- ..................................................
EW722488       --> TCAACAGGTGCAGTAGCTTTATGGTGCATCTGGATACTTCATGGAAGCAG
EW722577       --> TCAACAGGTGCAGTAGCTTTATGGTGCATCTGGATACTTCATGGAAGCAG
EV552489       --> ..................................................
FD568554       --> ..................................................
FD978406       --> ..................................................

               301    -    351
UN09142        --> AGGCAAACAAAAAGAAACCAACTAGTGAGAACTCTAAGCTTACTGAAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- ..................................................
EW727435       <-- ..................................................
FD974660       <-- ..................................................
EW722488       --> AGGCAAACAAAAAGAAACCAACTAGTGAGAACTCTAAGCTTACTGAAGTG
EW722577       --> AGGCAAACAAAAAGAAACCAACTAGTGAGAACTCTAAGCTTACTGAAGTG
EV552489       --> ...................gACTAGTGAGAACTCTAAGCTTACTGAAGTG
FD568554       --> ..................................................
FD978406       --> ..................................................

               351    -    401
UN09142        --> ACTGTGAGTGATAAGCTGGAAAGTCTCCGAGCTGCCAAAGAGCATTTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- .............................AGCTGCCAAAGAGCATTTTAG
EW727435       <-- ..................................................
FD974660       <-- ..................................................
EW722488       --> ACTGTGAGTGATAAGCTGGAAAGTCTCCGAGCTGCCAAAGAGCATTTTAG
EW722577       --> ACTGTGAGTGATAAGCTGGAAAGTCTCCGAGCTGCCAAAGAGCATTTTAG
EV552489       --> ACTGTGAGTGATAAGCTGGAAAGTCTCCGAGCTGCCAAAGAGCATTTTAG
FD568554       --> ..................................................
FD978406       --> ..................................................

               401    -    451
UN09142        --> AGGGTTAAGCTTTCCTACCATATCATCTGTTGGTTCAAACGCTGCCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- AGGGTTAAGCTT-CCTACCATATCATCTGTTGGTTCAAACGCTGCCATCA
EW727435       <-- ..................................................
FD974660       <-- ..................................................
EW722488       --> AGGGTTAAGCTTTCCTACCATATCATCTGTTGGTTCAAACGCTGCCATCA
EW722577       --> AGGGTTAAGCTTTCCTACCATATCATCTGTTGGTTCAAACGCTGCCATCA
EV552489       --> AGGGTTAAGCTTTCCTACCATATCATCTGTTGGTTCAAACGCTGCCATCA
FD568554       --> ..................................................
FD978406       --> ..................................................

               451    -    501
UN09142        --> TTCACTACTCACCAGAGCCTGAAGCTTGTGCTGAGATGGACCCTGACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- TTCACTACTCACCAGAGCCTGAAGCTTGTGCTGAGATGGACC-TGACAAA
EW727435       <-- ..................................................
FD974660       <-- ..................................................
EW722488       --> TTCACTACTCACCAGAGCCTGAAGCTTGTGCTGAGATGGACCCTGACAAA
EW722577       --> TTCACTACTCACCAGAGCCTGAAGCTTGTGCTGAGATGGACCCTGACAAA
EV552489       --> TTCACTACTCACCAGAGCCTGAAGCTTGTGCTGAGATGGACCCTGACAAA
FD568554       --> ..................................................
FD978406       --> ..................................................

               501    -    551
UN09142        --> ATCTACTTATGTGATTCAGGAGCACAGTATCTCGATGGGACAACCGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- ATCTACTTATGTGATTCAGGAGCACAGTATCTCGATGGGACAACCGATAT
EW727435       <-- ...TACTTATGTGATTCAGGAGCACAGTATCTCGATGGGACAACCGATAT
FD974660       <-- ..................................................
EW722488       --> ATCTACTTATGTGATTCAGGAGCACAGTATCTCGATGGGACAACCGATAT
EW722577       --> ATCTACTTATGTGATTCAGGAGCACAGTATCTCGATGGGACAACCGATAT
EV552489       --> ATCTACTTATGTGATTCAGGAGCACAGTATCTCGATGGGACAACCGATAT
FD568554       --> ........................................gAACCGATAT
FD978406       --> ..................................................

               551    -    601
UN09142        --> AACAAGAACGGTTCACTTTGGGAAACCTTCTGCTCATGAAAAGGACTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- AACAAGAACGGTTCACTTTGGGAAACCTTCTGCTCATGAAAAGGACTGTT
EW727435       <-- AACAAGAACGGTTCACTTTGGGAAACCTTCTGCTCATGAAAAGGACTGTT
FD974660       <-- ..................................................
EW722488       --> AACAAGAACGGTTCACTTTGGGAAACCTTCTGCTCATGAAAAGGACTGTT
EW722577       --> AACAAGAACGGTTCACTTTGGGAAACCTTCTGCTCATGAAAAGGACTGTT
EV552489       --> AACAAGAACGGTTCACTTTGGGAAACCTTCTGCTCATGAAAAGGACTGTT
FD568554       --> AACAAGAACGGTTCACTTTGGGAAACCTTCTGCTCATGAAAAGGACTGTT
FD978406       --> ..................................................

               601    -    651
UN09142        --> ATACCGCGGTGCTCAAGGGTCATGTTGCACTTGGAAATGCTAGGTTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- ATACCGCGGTGCTCAAGGGTCATGTTGCACTTGGAAATGCTAGGTTTCCT
EW727435       <-- ATACCGCGGTGCTCAAGGGTCATGTTGCACTTGGAAATGCTAGGTTTCCT
FD974660       <-- .gACCGCGGTGCTCAAGGGTCATGTTGCACTTGGAAATGCTAGGTTTCCT
EW722488       --> ATACCGCGGTGCTCAAGGGTCATGTTGCACTTGGAAATGCTAGGTTTC..
EW722577       --> ATACCGCGGTGCTCAAGGGTCATGTTGCACTTGGAAATGCTAGGTTTCCT
EV552489       --> ATACCGCGGTGCTCAAGGGTCATGTTGCACTTGGAAATGCTAGGTTTCCT
FD568554       --> ATACCGCGGTGCTCAAGGGTCATGTTGCACTTGGAAATGCTAGGTTTTCT
FD978406       --> .gACCGCGGTGCTCAAGGGTCATGTTGCACTTGGAAATGCTAGGTTTCCT

               651    -    701
UN09142        --> AAAGGAACAAACGGTTATACACTTGATATTCTTGCAAGAGCTCCTCTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- AAAGGAACAAACGGTTATACACTTGATATTCTTGCAAGAGCTCCTCTGTG
EW727435       <-- AAAGGAACAAACGGTTATACACTTGATATTCTTGCAAGAGCTCCTCTGTG
FD974660       <-- AAAGGAACAAACGGTTATACACTTGATATTCTTGCAAGAGCTCCTCTGTG
EW722488       --> ..................................................
EW722577       --> AAAGGAACAAACGGTTATACACTTGATATTCTTGCAAGAGCTCCTCTGTG
EV552489       --> AAAGGAACAAACGGTTATACACTTGATATTCTTGCAAGAGCTCCTCTGTG
FD568554       --> AAAGGAACAAACGGTTATACACTTGATATTCTTGCAAGAGCTCCTCTGTG
FD978406       --> AAAGGAACAAACGGTTATACACTTGATATTCTTGCAAGAGCTCCTCTGTG

               701    -    751
UN09142        --> GAAGTATGGTTTGGATTATCGACATGGTACTGGTCATGGAGTTGGCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- GAAGTATGGTTTGGATTATCGACATGGTACTGGTCATGGAGTTGGCCCTT
EW727435       <-- GAAGTATGGTTTGGATTATCGACATGGTACTGGTCATGGAGTTGGCCCTT
FD974660       <-- GAAGTATGGTTTGGATTATCGACATGGTACTGGTCATGGAGTTGGCTCTT
EW722488       --> ..................................................
EW722577       --> GAAGTATGGTTTGGATTATCGAC...........................
EV552489       --> GAAGTATGGTTTGGATTATCGACATGGTACTGGTCATGGAGTTGGCTCTT
FD568554       --> GAAGTATGGTTTGGATTATCGACATGGTACTGGTCATGGAGTTGGCTCTT
FD978406       --> GAAGTATGGTTTGGATTATCGACATGGTACTGGTCATGGAGTTGGCTCTT

               751    -    801
UN09142        --> ACCTTTTCGTTCATGAAGGACCTCACCAAGTTAGTTTCAGACCTAGTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- ACCTTTTCGTTCATGAAGGACCTCACCAAGTTAGTTTCAGACCTAGTGCT
EW727435       <-- ACCTTTTCGTTCATGAAGGACCTCACCAAGTTAGTTTCAGACCTAGTGCT
FD974660       <-- ACCTTTTCGTTCATGAAGGACCTCACCAAGTTAGTTTCAGACCTAGTGCT
EW722488       --> ..................................................
EW722577       --> ..................................................
EV552489       --> ACCTTTTCGTTCATGAAGGACCTCACCAAGTTAGTTTCAGACCTAGTGCT
FD568554       --> ACCTTTTCGTTCATGAAGGACCTCACCAAGTTAGTTTCAGACCTAGTGCT
FD978406       --> ACCTTTTCGTTCATGAAGGACCTCACCAAGTTAGTTTCAGACCTAGTGCT

               801    -    851
UN09142        --> AGAAATGTTCCTCTTCAAGCTACCATGACTGTAACAGATGAACCTGGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- AGAAATGTTCCTCTTCAAGCTACCATGACTGTAACAGATGAACCTGGTTA
EW727435       <-- AGAAATGTTCCTCTTCAAGCTACCATGACTGTAACAGATGAACCTGGTTA
FD974660       <-- AGAAATGTTCCTCTTCAAGTTACCATGACTGTAACAGATGAACCTGGTTA
EW722488       --> ..................................................
EW722577       --> ..................................................
EV552489       --> AGAAATGTTCCTCTTCAAGCTACCATGACTGTAACAGATGAACCTGGTTA
FD568554       --> AGAAATGTTCCTCTTCAAGCTACCATGACTGTAACAGATGAACCTGGTTA
FD978406       --> AGAAATGTTCCTCTTCAAGTTACCATGACTGTAACAGATGAACCTGGTTA

               851    -    901
UN09142        --> CTATGAAGATGGGAACTTTGGTATTAGGCTAGAGAATGTTCTTGTTGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- CTATGAAGATGGGAACTTTGGTATTAGGCTAGAGAATGTTCTTGTTGTCA
EW727435       <-- CTATGAAGATGGGAACTTTGGTATTAGGCTAGAGAATGTTCTTGTTGTCA
FD974660       <-- CTATGAAGATGGGAACTTTGGTATTAGGCTAGAGAATGTTCTTGTTGTCA
EW722488       --> ..................................................
EW722577       --> ..................................................
EV552489       --> CTATGAAGATGGGAACTTTGGTATTAGGCTAGAGAATGTTCTTGTTGTCA
FD568554       --> CTATGAAGATGGGAACTTTGGTATTAGGCTAGAGAATGTTCTTGTTGTCA
FD978406       --> CTATGAAGATGGGAACTTTGGTATTAGGCTAGAGAATGTTCTTGTTGTCA

               901    -    951
UN09142        --> ATAATGCTGAAACTGAGTTTAATTTTGGTGACAAGGGCTATTTGCAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- ACAATGCTGAAACTGAGTTTAATTTTGGTGACAAGGGCTACTTGCAGTTC  Raphanus sativus cv Early Scarlet Globe
EW727435       <-- ACAATGCTGAAACTGAGTTTAATTTTGGTGACAAGGGCTACTTGCAGTTC  Raphanus sativus cv Early Scarlet Globe
FD974660       <-- ATAATGCTGAAACTGACTTTAACTTTGGTGACAAGGGCTATTTGCAGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722488       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722577       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV552489       --> ATAATGCTGAAACTGACTTTAACTTTGGTGACAAGGGCTATTTGCAGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568554       --> ACAATGCTGAAACTGAGTTTAATTTTGGTGACAAGGGCTACTTGCAGTTC  Raphanus sativus cv Early Scarlet Globe
FD978406       --> ATAATGCTGAAACTGACTTTAACTTTGGTGACAAGGGCTATTTGCAGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)

               951    -   1001
UN09142        --> GAGCATATCACTTGGGCACCGTATCAAGTGAAACTTATCGATCTAAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- GAGCATATCACTTGGGCACCGTATCAAGTGAAACTTATCGATTTAAAGCA
EW727435       <-- GAGCATATCACTTGGGCACCGTATCAAGTGAAACTTATCGATCTAAAGCA
FD974660       <-- GAGCATATCACTTGGGCACCGTATCAAGTGAAACTTATCGATCTAAAGCA
EW722488       --> ..................................................
EW722577       --> ..................................................
EV552489       --> GAGCATATCACTTGGGCACCGTATCAAGTGAAACTTATCGATCTAAAGCA
FD568554       --> GAGCATATCACTTGGGCACCGTATCAAGTGAAACTTATCGATCTAAAGCA
FD978406       --> GAGCATATCACTTGGGCACCGTATCAAGTGAAACTTATCGATCTAAAGCA

               1001   -   1051
UN09142        --> GTTGACAGGTGAAGAGATCGATTGGTTGAACACGTACCATTTGAAATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- GTTAACACGTGAAGAGATCGATTGGTTGAACACATACCATTTGAAATGCA  Raphanus sativus cv Early Scarlet Globe
EW727435       <-- GTTAACACGTGAAGAGATCGATTGGTTGAACACATACCATTTGAAATGCA  Raphanus sativus cv Early Scarlet Globe
FD974660       <-- GTTGACAGGAGAAGAGATCGATTGGTTAAACACGTACCATTTGAAATGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722488       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722577       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV552489       --> GTTGACAGGAGAAGAGATCGATTGGTTAAACACGTACCATTTGAAATGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568554       --> GTTAACACGTGAAGAGATCGATTGGTTGAACACATACCATTTGAAATGCA  Raphanus sativus cv Early Scarlet Globe
FD978406       --> GTTGACAGGAGAAGAGATCGATTGGTTAAACACGTACCATTTGAAATGCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               1051   -   1101
UN09142        --> AGGATATCTTAGCTCCGTTCATGAACCAGACCGAAATGGAATGGCTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- AGGACATTTTAGCTCCGTTCATGAACCAGACCGAAATGGAATGGCTCAAG  Raphanus sativus cv Early Scarlet Globe
EW727435       <-- AGGACATCTTAGCTCCGTTCATGAACCAGACCGAAATGGAATGGCTCAAG  Raphanus sativus cv Early Scarlet Globe
FD974660       <-- AGGATATCTTAGCTCCGTTCATGAACCACACCGAAATGGAATGGCTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722488       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722577       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV552489       --> AGGATATCTTAGCTCCGTTCATGAACCACACCGAAATGGAA.........  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568554       --> AGGACATCTTAGCTCCGTTCATGAACCAGACCGAAATGGAATGGCTCAAG  Raphanus sativus cv Early Scarlet Globe
FD978406       --> AGGATATCTTAGCTCCGTTCATGAACCACACCGAAATGGAATGGCTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               1101   -   1151
UN09142        --> AAAGCTACCGAGCCTGTAAGTGTATCGGTTTGAAATTCCTGCACGGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- AAAGCTACCGAGCCTGTAAGTGTATCGGTTTGAAATTCCTGCACGGATGT
EW727435       <-- AAAGCTACCGAGCCTGTAAGTGTATCGGTTTGAAATTCCTGCACGGATGT
FD974660       <-- AAAGCTACCGAGCCTGTAAGTGTATCGGTTTGAAATTCCTGCACGGATGT
EW722488       --> ..................................................
EW722577       --> ..................................................
EV552489       --> ..................................................
FD568554       --> AAAGCTACCGAGCCTGTAAGTGTATCGGTTTGAAATTCCTGCACGGATGT
FD978406       --> AAAGCTACCGAGCCTGTAAGTGTATCGGTTTGAAATTCCTGCACGGATGT

               1151   -   1201
UN09142        --> AGATGTTTAGCAAATGGCTTCTTCGGTTGTTTCGCTGTTAAACCAAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- AGATGTTTAGCAAATGGCTTTTTCGGTTGTTTCGCTGTTAAACCAAACAT
EW727435       <-- AGATGTTTAGCAAATGGCTTCTTCGGTTGTTTCGCTGTTAAACCAAACAT
FD974660       <-- AGATGTTTAGCAAATGGCTTCTTCGGTTGTTTCGCTGTTAAACCAAACAT
EW722488       --> ..................................................
EW722577       --> ..................................................
EV552489       --> ..................................................
FD568554       --> AGATGTTTAGCAAATGGCTT..............................
FD978406       --> AGATGTTTAGCAAATGGCTTCTTCGGTTGTTTCGCTGTTAAACCAAACAT

               1201   -   1251
UN09142        --> AATTGTACGTCAACAACACAGATGCTTCTCCTTGGTTTACATTCAGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- AATTGTACGTCAACAACACAGATGCTTCTCCTTGGTTTACATTCAGACAT
EW727435       <-- AATTGTACGTCAACAACACAGATGCTTCTCCTTGGTTTACATTCAGACAT
FD974660       <-- AATTGTACGTCAACAACACAGATGCTTCTCCTTGGTTTACATTCAGACAT
EW722488       --> ..................................................
EW722577       --> ..................................................
EV552489       --> ..................................................
FD568554       --> ..................................................
FD978406       --> AATTGTACGTCAACAACACAGATGCTTCTCCTTGGTTTACATTCAGACAT

               1251   -   1301
UN09142        --> CCACAAAATAGAGGCTCATGTTTCTTGAACAACATGTCCTTGTTTCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727135       <-- CCACAAAATAGAGGCTCATGTTTCTTGAACAACATGTCCTTGTTTCTGT
EW727435       <-- CCACAAAATAGAGGCTCATGTTTCTTGAACAACATGTCCTTGTTTCTGT
FD974660       <-- CCACAAAATAAAGGCTCATGTTTCTTG......................
EW722488       --> .................................................
EW722577       --> .................................................
EV552489       --> .................................................
FD568554       --> .................................................
FD978406       --> CCACAAAATA-AAGCTCATGTTTCTTG......................