1      -     51
UN09153        --> GGGAAACACTCTGATGGACAGATCACAAGAAGAAGAAGAAGAAGAAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- ..................................................
FD977402       <-- ..................................................
FD558919       --> GGGAAACACTCTGATCCACAGATCACAAGAAGAAGAAGAAGAAGAAGAGA
EY923498       --> ...............GGACAGATCACAAGAAGAAGAAGAAGAAGAAGAGA
FD559437       --> ...............GGACAGATCACAAGAAGAAGAAGAAGAAGAAGAGA
EX765097       --> ..................................ggagatcacaagaAGA
FD978754       --> ................................ggacagaccacaagaAGA

               51     -    101
UN09153        --> AGAAGATGAAGCTGAAAGTGTATGCGGATCGTATGTCACAGCCATCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- ..................................................
FD977402       <-- ..................................................
FD558919       --> AGAAGATGAAGCTGAAAGTGTATGCGGATCGTATGTCACAGCCATCTCGT
EY923498       --> AGAAGATGAAGCTGAAAGTGTATGCGGATCGTATGTCACAGCCATCTCGT
FD559437       --> AGAAGATGAAGCTGAAAGTGTATGCGGATCGTATGTCACAGCCATCTCGT
EX765097       --> AGAAGATGAAGCTGAAAGTGTATGCAGATCGTATGTCACAGCCATCTCGT
FD978754       --> AGAAGATGAAGCTGAAAGTGTATGCAGATCGTATGTCACAGCCATCTCGT

               101    -    151
UN09153        --> GCTGTAATCATATTCTGCAAGGTTAACGGAATCCAATTCGATGAGGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- ..................................................
FD977402       <-- ..................................................
FD558919       --> GCTGTAATCATATTCTGCAAGGTTAACGGAATCCAATTCGATGAGGTTTT
EY923498       --> GCTGTAATCATATTCTGCAAGGTTAACGGAATCCAATTCGATGAGGTTTT
FD559437       --> GCTGTAATCATATTCTGCAAGGTTAACGGAATCCAATTCGATGAGGTTTT
EX765097       --> GCTGTAATCATATTCTGCAAGGTTAATGGAATCCAATTCGATGAGGTTTT
FD978754       --> GCTGTAATCATATTCTGCAAGGTTAATGGAATCCAATTCGATGAGGTTTT

               151    -    201
UN09153        --> GATTAACTTGGCGAAGCGTCAGCAATTATCCCCTGAATTCAAAGAGATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- ........................................AAAGAGATTA
FD977402       <-- ..................................................
FD558919       --> GATTAACTTGGCGAAGCGTCAGCAATTATCCCCTGAATTCAAAGAGATTA
EY923498       --> GATTAACTTGGCGAAGCGTCAGCAATTATCCCCTGAATTCAAAGAGATTA
FD559437       --> GATTAACTTGGCGAAGCGTCAGCAATTATCCCCTGAATTCAAAGAGATTA
EX765097       --> GATTAACTTGGCGAAGCGTCAGCAATTATCCCCTGAATTCAAAGAGATTA
FD978754       --> GATTAACTCGGCGAAGCGTCAGCAATTATCCCCTGAATTCAAAGAGATTA

               201    -    251
UN09153        --> ACCCATTGGGGAAGGTTCCAGCTATTGTTGACGGCAGATTTAAGCTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- ACCCATTGGGGAAGGTTCCAGCTATTGTTGACGGCAGATTTAAGCTCTTC
FD977402       <-- ..........................................AGCTCTTC
FD558919       --> ACCCATTGGGGAAGGTTCCAGCTATTGTTGACGGCAGATTTAAGCTCTTC
EY923498       --> ACCCATTGGGGAAGGTTCCAGCTATTGTTGACGGCAGATTTAAGCTCTTC
FD559437       --> ACCCATTGGGGAAGGTTCCAGCTATTGTTGACGGCAGATTTAAGCTCT-C
EX765097       --> ACCCATTGGGGAAGGTTCCAGCTATTGTTGACGGCAGATTTAAGCTCTTC
FD978754       --> ACCCATTGGGGAAGGTTCCAGCTATTGTTGACGGCAGATTTAAGCTCTTC

               251    -    301
UN09153        --> GAGAGTCACGCCATCTTGATTTATCTTGCTTCAGCATTCCCAAGTGTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- GAGAGTCACGCCATCTTGATTTATCTTGCTTCAGCATTCCCAAGTGTAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977402       <-- GAGAGTCACGCCATCTTGATTTATCTTGCTTCAGCATTCCCAAGTGTAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558919       --> GAGAGTCACGCCATCTTGATTTATCTTGCCTCAGCATTCCCAAGTGTAGC  Raphanus raphanistrum subsp. landra
EY923498       --> GAGAGTCACGCCATCTTGATTTATCTTGCCTCAGCATTCCCAAGTGTAGC  Raphanus raphanistrum subsp. landra
FD559437       --> GAGAGTCACGCCATCTTGATTTATCTTGCCTCAGCATTCCCAAGTGCAGC  Raphanus raphanistrum subsp. landra
EX765097       --> GAGAGTCACGCCATCTTGATTTATCTTGCTTCAGCATTCCCAAGTGTAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978754       --> GAGAGTCACGCCATCTTGATTTATCTTGCTTCAGCATTCCCAAGTGTAGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN09153        --> TGATCATTGGTACCCAAATGATCTTTCCAAGAGAGCCAAGATTCACTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- T-ATCATTGGTACCCAAATGATCTTTCCAAGAGAGCCAAGATTCACTCTG
FD977402       <-- TGATCATTGGTACCCAAATGATCTTTCCAAGAGAGCCAAGATTCACTCTG
FD558919       --> TGATCATTGGTACCCAAATGATCTTTCCAAGAGAGCCAAGATTCACTCTG
EY923498       --> TGATCATTGGTACCCAAATGATCTTTCCAAGAGAGCCAAGATTCACTCTG
FD559437       --> TGATCATTGGTACCCAAATGATCTTTCCAAGAGAGCCAAGATTCACTCTG
EX765097       --> TGATCATTGGTACCCAAATGATCTTTCCAAGAGAGCCAAGATTCACTCTG
FD978754       --> T-ATCATTGGTACCCAAATGATCTTTCCAAGAGAGCCAAGATTCACTCTG

               351    -    401
UN09153        --> TCTTGGATTGGCATCACACCAACTTACGCCCTGGTGCAGCTGGATATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- TCTTGGATTGGCATCACACCAACTTACGCCCTGGTGCAGCTGGATATGTA
FD977402       <-- TCTTGGATTGGCATCACACCAACTTACGCCCTGGTGCAGCTGGATATGTA
FD558919       --> TCTTGGATTGGCATCACACCAACTTACGCCCTGGTGCAGCTGGATATGTA
EY923498       --> TCTTGGATTGGCATCACACCAACTTACGCCCTGGTGCAGCTGGATATGTA
FD559437       --> TCTTGGGTTGGCATCACACCAACTTACGCCCTGGTGCAGCTGGATATGTA
EX765097       --> TCTTGGATTGGCATCACACCAACTTACGCCCTGGTGCAGCTGGATATGTA
FD978754       --> TCTTGGATTGGCATCACACCAACTTACGCCCTGGTGCAGCTGGATATGTA

               401    -    451
UN09153        --> ATGAATAGTGTTCTAGCTCCATTTCTTGGCCGTTCTCTGGATTCGAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- ATGAATAGTGTTCTAGCTCCATTTCTTGGCCGTTCTCTGGATTCGAAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977402       <-- ATGAATAGTGTTCTAGCTCCATTTCTTGGCCGTTCTCTGGATTCGAAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558919       --> ATGAATAGTGTTCTAGCTCCATTTCTTGGCCGGTCTCTGGATTCGAAAGC  Raphanus raphanistrum subsp. landra
EY923498       --> ATGAATAGTGTTCTAGCTCCATTTCTTGGCCGGTCTCTGGATTCGAAAGC  Raphanus raphanistrum subsp. landra
FD559437       --> ATGAATAGTTTTCTAGCTCCATTTCTTGGCCGGTCTCTGGATTCGAAAGC  Raphanus raphanistrum subsp. landra
EX765097       --> ATGAATAGTGTTCTAGCTCCATTTCTTGGCCGTTCTCTGGATTCGAAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978754       --> ATGAATAGTGTTCTAGCTCCATTTCTTGGCCGTTCTCTGGATTCGAAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN09153        --> AGCTGCTGAAGCTGAGAAGATACTAACCAAGTCTCTGTCCACTCTGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- AGCTGCTGAAGCTGAGAAGATACTAACCAAGTCTCTGTCCACTCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977402       <-- AGCTGCTGAAGCTGAGAAGATACTAACCAAGTCTCTGTCCACTCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558919       --> AGCTGCTGAAGCTGAGAAGCTACTAACCAAGTCTCTGTCCACTCTGGAGA  Raphanus raphanistrum subsp. landra
EY923498       --> AGCTGCTGAAGCTGAGAAGCTACTAACCAAGTCTCTGTCCACTCTGGAGA  Raphanus raphanistrum subsp. landra
FD559437       --> AGCTGCTGAAGCTGAGAAGCTACTAACCAAGTCTCT-TCCACTCTGGAGA  Raphanus raphanistrum subsp. landra
EX765097       --> AGCTGCTGAAGCTGAGAAGATACTAACCAAGTCTCTGTCCACTCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978754       --> AGCTGCTGAAGCTGAGAAGATACTAACCAAGTCTCTGTCCACTCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN09153        --> CTTTTTGGCTTAAGGGGAATGGTAAATTCTTGCTGGGAAGCAACCAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- CTTTTTGGCTTAAGGGGAATGGTAAATTCTTGCTGGGAAGCAACCAACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977402       <-- CTTTTTGGCTTAGGGGGAATGGTAAATTCTTGCTGGGAAGCAACCAACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558919       --> CTTTTTGGCTTAAGGGCAATGCTAAATTCTTGCTGGGAAGCAACCAACCA  Raphanus raphanistrum subsp. landra
EY923498       --> CTTTTTGGCTTAAGGGCAATGCTAAATTCTTGCTGGGAAGCAACCAACCA  Raphanus raphanistrum subsp. landra
FD559437       --> CTTTTTGGCTTAAGGGCAATGCTAAATTCTTGCTGGGAAGTAACCAACCA  Raphanus raphanistrum subsp. landra
EX765097       --> CTTTTTGGCTTAAGGGGAATGGTAAATTCTTGCTGGGAAGCAACCAACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978754       --> CTTTTTGGCTTAAGGGGAATGGTAAATTCTTGCTGGGAAGCAACCAACCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN09153        --> TCCATAGCTGATCTCAACCTTGTATGCGAGCTTATGCAGCTCCAGGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- TCCATAGCTGATCTCAACCTTGTATGCGAGCTTATGCAGCTCCAGGTTTT
FD977402       <-- TCCATAGCTGATCTTAACCTTGTATGCGAGCTTATGCAGCTCCAGGTTTT
FD558919       --> TCCATAGCTGATCTCAACCTTGTATGCGAGCTTATGCAGCTCCAGGTTTT
EY923498       --> TCCATAGCTGATCTCAACCTTGTATGTGAGCTTATGCAGCTCCAGGTTTT
FD559437       --> TCCATAGCTGATCTCAACCTTGTATGCGAGCTTATGCAGCTCCAGGTTTT
EX765097       --> TCCATAGCTGATCTCAACCTTGTATGCGAGCTTATGCAGCTCCAGGTTTT
FD978754       --> TCCATAGCTGATCTCAACCTTGTATGCGAGCTTATGCAGCTCCAGGTTTT

               601    -    651
UN09153        --> GGATGAGAAAGATCGTCTCAGGTTGTTTAGTCCCTACAAGAAAGTTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- GGATGAGAAAGATCGTCTCAGGTTGTTTAGTCCCTACAAGAAAGTTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977402       <-- GGATGAGAAAGATCGTCTCAGGTTGTTTAGTCCCTACAAGAAAGTTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558919       --> GGATGAGAAAGATCGTCTCACGTTGTTTAGTCCTTACAAGAAAGTTGAAG  Raphanus raphanistrum subsp. landra
EY923498       --> GGATGAGAAAGATCGTCTCAGGTTGTTTAGTCCTTACAAGAAAGTTGAAG  Raphanus raphanistrum subsp. landra
FD559437       --> GGATGAGAAAGATCGTCTCAGGTTGTTTAGTCCTTACAAGAAAGTTGAAG  Raphanus raphanistrum subsp. landra
EX765097       --> GGATGAGAAAGATCGTCTCATGTTGTTTAGTCCCTACAAGAAAGTTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978754       --> GGATGAGAAAGATCGTCTCAGGTTGTTTAGTCCCTACAAGAAAGTTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN09153        --> AATGGATTGAGGATACGAGAAAGGCGACACTGCCTCACTTTGATGTGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- AATGGATTGAGGATACGAGAAAGGCGACACTGCCTCACTTTGATGTGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977402       <-- AATGGATTGAGGATACGAGAAAGGCGACACTGCCTCACTTTGATGTGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558919       --> AATGGATTGAGAATA...................................  Raphanus raphanistrum subsp. landra
EY923498       --> AATGGATTGAGAATACGAGGAAG-CGACACAGCCTCACTTTGATGTGGTT  Raphanus raphanistrum subsp. landra
FD559437       --> AATGGATTGAGAATACGAGGAAG-CGACACAGCCTCACTTTGATGTGGTT  Raphanus raphanistrum subsp. landra
EX765097       --> A-TGGATTGAGGATACGAGAAAGGCGACACTGCCTCACTTTGATGTGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD978754       --> AATGGATTGAGGATACGAGAAAGGCGACACTGCCTCACTTTGATGTGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN09153        --> CACAAAATCCTTTACGGAGCCAAAGACAAATTTGACAAGCAGCTGAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- CACAAAATCCTTTACGGAGCCAAAGACAAATTTGACAAGCAGCTGAAGAT
FD977402       <-- CACAAAATCCTTTACGGAGCCAAAGACAAATTTGACAAGCAGCTGAAGAT
FD558919       --> ..................................................
EY923498       --> CACAAAATCCTTTACG-AGCCAAAGACAA-TTTGACA-GCAGCTGA-GAT
FD559437       --> CACAAAATCCTTT.....................................
EX765097       --> ..................................................
FD978754       --> CACAAAATCCTTTACG-AGCCAAAGACAAATTTGACAAGCAGCTGA-GAT

               751    -    801
UN09153        --> GTCTAAACCGGGTTTTCAATCTAAGATGTAAGAAGAAGAAGAAAAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- GTCTAAACCGGGTTTTCAATCTAAGATGTAAGAAGAAGAAGAAAAAAAGA
FD977402       <-- GTCTAAACCGGGTTTTCAATCTAAGATGTAAGAAGAAGAAGAAAAAA-GA
FD558919       --> ..................................................
EY923498       --> GTCTAAACCGGGTTT-C-ATCT-AGATGTAAGAgagagaaaaa.......
FD559437       --> ..................................................
EX765097       --> ..................................................
FD978754       --> GTCTAAACCGGGTTT-CAATCTAAGATGTAAGAA................

               801    -    851
UN09153        --> TGGTTTGCGCAAAACCGGTTTAAGGGATTACTGTAATAACTCGGTTCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- TGGTTTGCGCAAAACCGGTTTAAGGGATTACTGTAATAACTCGGTTCAAC
FD977402       <-- TGGTTTGCGCAAAACCGGTTTAAGGGATTACTGTAATAACTCGGTTCAAC
FD558919       --> ..................................................
EY923498       --> ..................................................
FD559437       --> ..................................................
EX765097       --> ..................................................
FD978754       --> ..................................................

               851    -    901
UN09153        --> ATTCACATTGTAACCGGAACCAAAGGATGTAATCATATCAGGACTTTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- ATTCACATTGTAACCGGAACCAAAGGATGTAATCATATCAGGACTTTTAA
FD977402       <-- ATTCACATTGTAACCGGAACCAAAGGATGTAATCATATCAGGACTTTTAA
FD558919       --> ..................................................
EY923498       --> ..................................................
FD559437       --> ..................................................
EX765097       --> ..................................................
FD978754       --> ..................................................

               901    -    951
UN09153        --> TAAATGAGACAGCAATCAGCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~
FD974931       <-- TAAATGAGACAGCAATCAGCAATC
FD977402       <-- TAAATGAGACAGCAATCAGCAATC
FD558919       --> ........................
EY923498       --> ........................
FD559437       --> ........................
EX765097       --> ........................
FD978754       --> ........................