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Alignment for radish unigene UN09269

               1      -     51
UN09269        --> GGATGGAGTGAACGATGCTCCAGCTCTTAAAAGAGCTGACATCGGAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- ..................................................
EV571972       <-- ..................................................
EX752756       <-- ..................................................
FD539590       <-- ..................................................
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> GGATGGAGTGAACGATGCTCCAGCTCTTAAAAGAGCTGACATCGGAATAG
EY900836       --> ..................................................
FD964313       --> ..................................................
FD543839       --> ..................................................
EX748948       --> ..................................................

               51     -    101
UN09269        --> CTGTTGCTGACGCGACCGATGCGGCGAGAAGTGCATCTGACATTGTACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- ..................................................
EV571972       <-- ..................................................
EX752756       <-- ..................................................
FD539590       <-- ..................................................
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> CTGTTGCTGACGCGACCGATGCGGCGAGAAGTGCATCTGACATTGTACTA
EY900836       --> .....GCTGACGCGACCGATGCGGCGAGAAGTGCATCTGACATTGTACTA
FD964313       --> ..................................................
FD543839       --> ..................................................
EX748948       --> ..................................................

               101    -    151
UN09269        --> ACCGAGCCAGGTCTCAGTGTCATAGTAAGTGCTGTCTTGACGAGCAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- ..................................................
EV571972       <-- ..................................................
EX752756       <-- ..................................................
FD539590       <-- ..................................................
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> ACCGAGCCAGGCCTCAGTGTCATAGTAAGTGCTGTCTTGACGAGCAGATC
EY900836       --> ACCGAGCCAGGTCTCAGTGTCATAGTAAGTGCTGTCTTGACGAGCAGAGC
FD964313       --> ..................................................
FD543839       --> ..................................................
EX748948       --> ..................................................

               151    -    201
UN09269        --> CATCTTCCAGAGAATGAAGAACTACACAATCTACGCAGTCTCAATCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- ..................................................
EV571972       <-- ..................................................
EX752756       <-- ..................................................
FD539590       <-- ..................................................
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> CATCTTCCAGAGAATGAAGAACTACACAATCTACGCAGTCTCAATCACAA
EY900836       --> CATCTTCCAGAGAATGAAGAACTACACAATCTACGCAGTCTCAATCACAA
FD964313       --> ..................................................
FD543839       --> ..................................................
EX748948       --> ..................................................

               201    -    251
UN09269        --> TCCGTGTAGTGATGGGCTTTATGCTGCTTGCACTCATATGGAAGTTCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- ..................................................
EV571972       <-- ..................................................
EX752756       <-- ..................................................
FD539590       <-- ..................................................
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> TCCGTGTAGTGATGGGCTTTATGCTGCTTGCACTCATATGGAAGTTCGAC
EY900836       --> TCCGTGTAGTGATGGGCTTTATGCTGCTTGCACTCATATGGAAGTTCGAC
FD964313       --> ..................................................
FD543839       --> ..................................................
EX748948       --> ..................................................

               251    -    301
UN09269        --> TTCTCACCATTCATGGTGTTGGTCATAGCCATCCTGAATGATGGTACTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- ..................................................
EV571972       <-- ..................................................
EX752756       <-- ..................................................
FD539590       <-- ..................................................
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> TTCTCACCATTCATGGTGTTGGTCATAGCCATCCTGAATGATGGTACTAT
EY900836       --> TTCTCACCATTCATGGTGTTGGTCATAGCCATCCTGAATGATGGTACTAT
FD964313       --> ..................ggGGTCATAGCCATCCTGAATGATGGTACTAT
FD543839       --> ..................................................
EX748948       --> ..................................................

               301    -    351
UN09269        --> CATGACCATATCAAAGGACAGAGTAAAGCCTTCTCCACTTCCTGATTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- ..................................................
EV571972       <-- ..................................................
EX752756       <-- ..................................................
FD539590       <-- ..................................................
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> CATGACCATATCAAAGGACAGAGTAAAGCCTTCTCCACTTCCTGATTCAT
EY900836       --> CATGACCATATCAGAGGACAGAGTAAAGCCTTCTCCACTTCCTGATTCAT
FD964313       --> CATGACCATATCAAAGGACAGAGTAAAGCCTTCTCCACTTCCTGATTCAT
FD543839       --> ..................................................
EX748948       --> ..................................................

               351    -    401
UN09269        --> GGAAACTCAAAGAGATATTTGCCACTGGCGTTGTTCTTGGCACATACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- ..................................................
EV571972       <-- ..................................................
EX752756       <-- ..................................................
FD539590       <-- ..................................................
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> GGAAACTCAAAGAGATATTTGCCACTGGCGTTGTTCTTGGCACATACCTT
EY900836       --> GGAAACTCAAAGAGATATTTGCCACTGGCGTTGTTCTTGGCACATACCTT
FD964313       --> GGAAACTCAAAGAGATATTTGCCACTGGCGTTGTTCTTGGCACATACCTT
FD543839       --> .......................................GCACATACCTT
EX748948       --> ..................................................

               401    -    451
UN09269        --> GCAGTCATGACTGTCGTTTTCTTCTGGGCTACAGAGAGCACTGACTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- .................................................T
EV571972       <-- ..................................................
EX752756       <-- ..................................................
FD539590       <-- ..................................................
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> GCAGTCATGACTGTCGTTTTCTTCTGGGCTACAGAGAGCACTGACTTCTT
EY900836       --> GCAGTCATGACTGTCGTTTTCTTCTGGGCTACAGAGAGCACTGACTTCTT
FD964313       --> GCAGTCATGACTGTCGTTTTCTTCTGGGCTACAGAGAGCACTGACTTCTT
FD543839       --> GCAGTCATGACTGTTGTTTTCTTCTGGGCTGCAGAGAGCACAGACTTCTT
EX748948       --> ..................................................

               451    -    501
UN09269        --> CTCGGCAAAGTTTGGGGTGAGATCTATCAGTGGGAATCCGCATGAGCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- CTCGGCAAAGTTTGGGGTGAGATCTATCAGTGGGAATCCACATGAGCTTA
EV571972       <-- ..................................................
EX752756       <-- ..................................................
FD539590       <-- ..................................................
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> CTCGGCAAAGTTTGGGGTGAGATCTATCAGTGGGAATCCGCATGAGCTTA
EY900836       --> CTCGGCAAAGTTTGGGGTGAGATCTATCAGTGGGAATCCGCATGAGCTTA
FD964313       --> CTCGGCAAAGTTTGGGGTGAGATCTATCAGTGGGAATCCGCATGAGCTTA
FD543839       --> CTCTGCAAAGTTTGGGGTGAGATCTATCAGTGGGAATCCGCACGAGCCTA
EX748948       --> ...............................................gTA

               501    -    551
UN09269        --> CATCAGCTATATACCTCCAAGTTAGCATAATTAGCCAGGCGCTTATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- CATCAGCTATATACCTCCAAGTTAGCATAATTAGCCAGGCGCTTATCTTT
EV571972       <-- CATCAGCTATATACCTCCAAGTTAGCATAATTAGCCAGGCGCTTATCTTT
EX752756       <-- ........................GCATAATTAGCCAGGCGCTTATCTTT
FD539590       <-- ..................................................
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> CATCAGCTATATACCTCCAAGTTAGCATAATTAGCCAGGCGCTTATCTTT
EY900836       --> CATCAGCTATATACCTCCAAGTTAGCATAATTAGCCAGGCGCTTATCTTT
FD964313       --> CATCAGCTATATACCTCCAAGTTAGCATAATTAGCCAGGCGCTTATCTTT
FD543839       --> CATCAGCTATATACCTCCAAGTTAGTATAATTAGCCAGGCACTTATCTTT
EX748948       --> CATCAGCTATATACCTCCAAGTTAGCATAATTAGCCAGGCGCTTATCTTT

               551    -    601
UN09269        --> GTCACAAGGTCACGTAGCTGGTCTTATGCTGAACGTCCTGGCTTATGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- GTCACAAGGTCACGTAGCTGGTCTTATGCTGAACGTCCTGGCTTATGGTT
EV571972       <-- GTCACAAGGTCACGTAGCTGGTCTTATGCTGAACGTCCTGGCTTATGGTT
EX752756       <-- GTCACAAGGTCACGTAGCTGGTCTTATGCTGAACGTCCTGGCTTATGGTT
FD539590       <-- ....CAAGGTCACGTAGCTGGTCTTATGCTGAACGTCCTGGCTTATGGTT
FD960360       <-- ..................................................
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> GTCACAAGGTCACGTAGCTGGTCTTATGCTGAACGTCCTGGCTTATGGTT
EY900836       --> GTCACAAGGTCACGTAGCTGGTCTTATGCTGAACGTCCTGGCTTATGGTT
FD964313       --> GTCACAAGGTCACGTAGCTGGTCTTATGCTGAACGTCCTGGCTTATGGTT
FD543839       --> GTCACAAGGTCACGTAGCTGGTCTTATGCTGAACGTCCTGGCTTATGGTT
EX748948       --> GTCACAAGGTCACGTAGCTGGTCTTATGCTGAACGTCCTGGCTTATGGTT

               601    -    651
UN09269        --> GATCGCTGCCTTTTTCTTAGCTCAGCTGATTGCTACTCTCATTGCGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- GATCGCTGCCTTTTTCTTAGCTCAGCTGATTGCTACTCTCATTGCGGTGT
EV571972       <-- GATCGCTGCCTTTTTCTTAGCTCAGCTGATTGCTACTCTCATTGCGGTGT
EX752756       <-- GATCGCTGCCTTTTTCTTAGCTCAGCTGATTGCTACTCTCATTGCGGTGT
FD539590       <-- GATCGCTGCCTCTTTCTTAGCTCAGCTGATTGCTACTCTCATTGCTGTGT
FD960360       <-- ..........TTTTTCTTAGCTCAGCTGATTGCTACTCTCATTGCGGTGT
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> GATCGCTGCCTTTTTC..................................
EY900836       --> GATCGCTGCCTTTTTCTTAGCTCAGCTGATTGCTACTCTCATTGCGGTGT
FD964313       --> GATCGCTGCCTTTTTCTTAGCTCAGCTGATTGCTACTCTCATTGCGGTGT
FD543839       --> GATCGCTGCCTCTTTCTTAGCTCAGCTGATTGCTACTCTCATTGCTGTGT
EX748948       --> GATCGCTGCCTTTTTCTTAGCTCAGCTGATTGCTACTCTCATTGCGGTGT

               651    -    701
UN09269        --> ATGCAAACTGGGATTTTGCAAGAATCAGAGGTACTGGGTGGGGATGGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- ATGCAAACTGGGATTTTGCAAGAATCAGAGGTACTGGGTGGGGATGGGCA
EV571972       <-- ATGCAAACTGGGATTTTGCAAGAATCAGAGGTACTGGGTGGGGATGGGCA
EX752756       <-- ATGCAAACTGGGATTTTGCAAGAATCAGAGGTACTGGGTGGGGATGGGCA
FD539590       <-- ATGCAAACTTGGATTTTGCAAGAATCAGAGGTACAGGGTGGGGATGGGCA
FD960360       <-- ATGCAAACTGGGATTTTGCAAGAATCAGAGGTACTGGGTGGGGATGGGCA
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> ..................................................
EY900836       --> ATGCAAACTGGGATTTTGCAAGAATCAGAGGTACTGGGTGGGGATGGGCA
FD964313       --> ATGCAAACTGGGATTTTGCAAGAATCAGAGGTACTGGGTGGGGATGGGCA
FD543839       --> ATGCAAACTTGGATTTTGCAAGAATCAGAGGTACAGGGTGGGGATGGGCA
EX748948       --> ATGCAAACTGGGATTTTGCAAGAATCAGAGGTACTGGGTGGGGATGGGCA

               701    -    751
UN09269        --> GGAGTGATCTGGCTCTACAGTATAGTTACTTACGTTCCATTGGATATACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- GGAGTGATCTGGCTCTACAGTATAGTTACTTACGTTCCATTGGATATACT
EV571972       <-- GGAGTGATCTGGCTCTACAGTATAGTTACTTACGTTCCATTGGATATACT
EX752756       <-- GGAGTGATCTGGCTCTACAGTATAGTTACTTACGTTCCATTGGATATACT
FD539590       <-- GGAGTTATCTGGCTCTACAGTATAGTTACTTACGTCCCATTGGATATACT
FD960360       <-- GGAGTGATCTGGCTCTACAGTATAGTTACTTACGTTCCATTGGATATACT
EX767360       <-- ..................................................
EY919089       <-- ..................................................
EY923281       --> ..................................................
EY900836       --> GGAGTGATCTGGCTCTACAGTATAGTTACTTACGTTCCATTGGATATACT
FD964313       --> GGAGTGATCTGGCTCTACAGTATAGTTACTTACGTTCCATTGGATATACT
FD543839       --> GGAGTTATCTGGCTCTACAGTATAGTTACTTACGTCCCATTGGATATACT
EX748948       --> GGAGTGATCTGGCTCTACAGTATAGTTACTTACGTTCCATTGGATATACT

               751    -    801
UN09269        --> CAAGTTCATCATCAGATATTCACTAAGTGGTAGAGCCTGGGATAATGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- CAAGTTCATCATCAGATATTCACTAAGTGGTAGAGCCTGGGATAATGTCA
EV571972       <-- CAAGTTCATCATCAGATATTCACTAAGTGGTAGAGCCTGGGATAATGTCA
EX752756       <-- CAAGTTCATCATCAGATATTCACTAAGTGGTAGAGCCTGGGATAATGTCA
FD539590       <-- CAAGTTCATCATCAGATATTCACTAAGTGGTAGAGCCTGGGATAATGTCA
FD960360       <-- CAAGTTCATCATCAGATATTCACTAAGTGGTAGAGCCTGGGATAATGTCA
EX767360       <-- ...............................AGAGCCTGGGATAATGTCA
EY919089       <-- ..................................................
EY923281       --> ..................................................
EY900836       --> CAAGTTCATCATCAGATATTCACTAAGTGGTAGAGCCTGGGATAATGT..
FD964313       --> CAAGTTCATCATCAGATATTCACTAAGTGGTAGAGCCTGGGATAATGTCA
FD543839       --> CAAGTTCATCATCAGATATTCACTAAGTGGTAGAGCCTGGGATAATGTCA
EX748948       --> CAAGTTCATCATCAGATATTCACTAAGTGGTAGAGCCTGGGATAATGTCA

               801    -    851
UN09269        --> TTGAGAACAAGACCGCTTTCACGTCAAAGAAAGACTATGGAAAAGGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- TTGAGAACAAGACCGCTTTCACGTCAAAGAAAGACTATGGAAAAGGAGAG
EV571972       <-- TTGAGAACAAGACCGCTTTCACGTCAAAGAAAGACTATGGAAAAGGAGAG
EX752756       <-- TTGAGAACAAGACCGCTTTCACGTCAAAGAAAGACTATGGAAAAGGAGAG
FD539590       <-- TTGAGAACAAGACCGCTTTCACGTCAAAGAAAGACTATGGAAAAGGAGAG
FD960360       <-- TTGAGAACAAGACCGCTTTCACGTCAAAGAAAGACTATGGAAAAGGAGAG
EX767360       <-- TTGAGAACAAGACCGCTTTCACGTCAAAGAAAGACTATGGAAAAGGAGAG
EY919089       <-- ..................................................
EY923281       --> ..................................................
EY900836       --> ..................................................
FD964313       --> TTGAGAACAAGACCGCTTTCACGTCAAAGAA-GACTATGGAAAAGGAGAG
FD543839       --> TTGAGAACAAGACCGCTTTCACGTCAAAGAAAGACTATGGAAAAGGAGAG
EX748948       --> TTGAGAACAAGACCGCTTTCACGTCAAAGAAAGACTATGGAAAAGGAGAG

               851    -    901
UN09269        --> AGGGAAGCACAATGGGCACAAGCTCAACGTACCCTTCACGGATTGCAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- AGGGAAGCACAATGGGCACAAGCTCAACGTACCCTTCACGGATTGCAACC
EV571972       <-- AGGGAAGCACAATGGGCACAAGCTCAACGTACCCTTCACGGATTGCAACC
EX752756       <-- AGGGAAGCACAATGGGCACAAGCTCAACGTACCCTTCACGGATTGCAACC
FD539590       <-- AGGGAAGCACAATGGGCACAAGCTCAACGTACCCTTCACGGATTGCAACC
FD960360       <-- AGGGAAGCACAATGGGCACAAGCTCAACGTACCCTTCACGGATTGCAACC
EX767360       <-- AGGGAAGCACAATGGGCACAAGCTCAACGTACCCTTCACGGATTGCAACC
EY919089       <-- ................................CCTTCACGGATTGCAACC
EY923281       --> ..................................................
EY900836       --> ..................................................
FD964313       --> AGGGAAGCACAATGGGCACAAGCTCAACGTACCCTTCACGGATTGCAACC
FD543839       --> AGGGAAGCACAATGGGCACAAGCTCAACGTACCCTTCACGGATTGCAACC
EX748948       --> AGGGAAGCACAATGGGCACAAGCTCAACGTACCCTTCACGGATTGCAACC

               901    -    951
UN09269        --> TGCTCAGCCCTCAGATATGTTCAACGACAAGAGCACTTATAGAGAACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- TGCTCAGCCCTC-GATATGTTCAACGACAAGAGCACTTATAGAGAACTTT
EV571972       <-- TGCTCAGCCCTC-GATATGTTCAACGACAAGAGCACTTATAGAGAACTTT
EX752756       <-- TGCTCAGCCCTCAGATATGTTCAACGACAAGAGCACTTATAGAGAACTTT
FD539590       <-- TGCTCAGCCCTCAGAAATGTTCAACGATAAGAGTACTTATAGAGAACTTT
FD960360       <-- TGCTCAGCCCTCAGATATGTTCAACGACAAGAGCACTTATAGAGAACTTT
EX767360       <-- TGCTCAGCCCTCAGATATGTTCAACGACAAGAGCACTTACAGAGAACTTT
EY919089       <-- TGTTCAGCCCTCAGATATGTTCAACGGCAAGAGCACTTATAGAGAACTTT
EY923281       --> ..................................................
EY900836       --> ..................................................
FD964313       --> TGCTCAGCCCTCAGATATGTTCAACGACAAGAGCACTTATAGAGAACTTT
FD543839       --> TGCTCAGCCCTCAGAAATGTTCAACGATAAGAGTACTTATAGAGAACTTT
EX748948       --> TGCTCAGCCCTCAGATATGTTCAACGACAAGAGCACTTATAGAGAACTTT

               951    -   1001
UN09269        --> CAGAGATAGCAGATCAGGCCAAGAGACGGGCTGAAGTCGCAAGGTTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- CAGAGATAGCAGATCAGGCCAAGAGACGGGCTGAAGTCGCAAGTTTAAGA
EV571972       <-- CAGAGATAGCAGATCAGGCCAAGAGACGGGCTGAAGTCGCAAGTTTAAGA
EX752756       <-- CAGAGATAGCAGATCAGGCCAAGAGACGGGCTGAAGTCGCAAGGTTAAGA
FD539590       <-- CAGAGATAGCTGACCAGGCCAAGAGACGGGCTGAAGTCGCAAGGTTAAGA
FD960360       <-- CAGAGATAGCAGATCAGGCCAAGAGACGGGCTGAAGTCGCAAGGTTAAGA
EX767360       <-- CAGAGATAGCTGATCAAGCCAAGAGACGAGCTGAAGTCGCAAGGTTAAGA
EY919089       <-- CAGAGATAGCAGATCAGGCCAAGAGACGGGCTGAAGTCGCAAGGTTAAGA
EY923281       --> ..................................................
EY900836       --> ..................................................
FD964313       --> CAGAGATAGCAGATCAG-CC-AGAGACGGGCTGAAGTCGCAAGGT-AAGA
FD543839       --> CAGAGATAGCTGACCAGGCCAAGAGACGGGCTGAAGTCGCAAGGTTAAGA
EX748948       --> CAGAGATAGCAGATCAGGCCAAGAGACGGGCTGAAGTCGCAAGGTTAAGA

               1001   -   1051
UN09269        --> GAGCATCATACATTGAAAGGTCACGTGGAATCAGTAGTGAAGCAGAAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- GAGCATCATACATTGAAAGGTCACGTGGAATCAGTAGTGAAGCAGAAGGG
EV571972       <-- GAGCATCATACATTGAAAGGTCACGTGGAATCAGTAGTGAAGCAGAAGGG
EX752756       <-- GAGCATCATACATTGAAAGGTCACGTGGAATCAGTAGTGAAGCAGAAGGG
FD539590       <-- GAGCATCATACATTGAAAGGTCACGTGGAATCAGTAGTGAAGCAGAAGGG
FD960360       <-- GAGCATCATACATTGAAAGGTCACGTGGAATCAGTAGTGAAGCAGAAGGG
EX767360       <-- GAGCATCATACATTGAAAGGTCACGTGGAATCAGTAGTGAAGCAGAAGGG
EY919089       <-- GAGCATCATACATTGAAAGGTCACGTGGAATCAGTAGTGAAGCAGAAGGG
EY923281       --> ..................................................
EY900836       --> ..................................................
FD964313       --> GAGCATCATACAT-GAAAG-TCACGTGGAATCAGTAGTGAgc........
FD543839       --> GAGCATCATACATTGAAAGGTCACGTGGAATCAGTAGTGAAGCA......
EX748948       --> GAGCATCATACATTGAAAGGTCACGTGGAATCAGTAGTGAAGCAGAAGGG

               1051   -   1101
UN09269        --> ACTTGACATAGAGGCAATCCAGCAACACTACACCCTGTGATTGATTTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- ACTTGACATAGAGGCAATCCAGCAACACTACACCCTGTGATTGATTTTCA
EV571972       <-- ACTTGACATAGAGGCAATCCAGCAACACTACACCCTGTGATTGATTTTCA
EX752756       <-- ACTTGACATAGAGGCAATCCAGCAACACTACACCCTGTGATTGATTTTCA
FD539590       <-- ATTTGACATAGAGGCTATCCAGCAACACTACACCCTGTGATTGATTTTCA
FD960360       <-- ACTTGACATAGAGGCAATCCAGCAACACTACACCCTGTGATTGATTTTCA
EX767360       <-- ACTTGACATAGAGGCAATCCAGCAACACTACACCCTGTGATTGATTTTCA
EY919089       <-- ACTTGACATAGAGGCAATCCAGCAACACTACACCCTGTGATTGATTTTCA
EY923281       --> ..................................................
EY900836       --> ..................................................
FD964313       --> ..................................................
FD543839       --> ..................................................
EX748948       --> ACTTGACATAGAGGCAATCCAGCAACACTACACCCTGTGATTGATTTTCA

               1101   -   1151
UN09269        --> GAAACAAAGTGTGT-TTCTCAGTTTAGTTTAGAACTAAAACCCCACAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- GAAACAAAGTGTCT-TTCTCAGTTTAGTTTAGAACTAAAACCCCACAAGA  Raphanus raphanistrum subsp. landra
EV571972       <-- GAAACAAAGTGTCT-TTCTCAGTTTAGTTTAGAACTAAAACCCCACAAGA  Raphanus raphanistrum subsp. landra
EX752756       <-- GAAACAAAGCGTGT-TTCTCAGTTTAGTTTAGAACTAAAACCCCACAAGA  Raphanus raphanistrum subsp. maritimus
FD539590       <-- GAAACAAAGTGTGTGTTCTCAGTTTAGTTTAGAACTAAAACCCCACAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960360       <-- GAAACAAAGTGTGT-TTCTCAGTTTAGTTTAGAACTAAAACCCCACAAGA  Raphanus raphanistrum subsp. maritimus
EX767360       <-- GAAACAAAGTTTGT-TTCTCAGTTTAGTTTAGAACTAAAACCCCACAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY919089       <-- GAAACAAAGTTTCT-TTTTCAGTTTAGTTTAGAACTAAAACCCCACAAGA  Raphanus raphanistrum subsp. landra
EY923281       --> ..................................................  Raphanus raphanistrum subsp. landra
EY900836       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD964313       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD543839       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748948       --> GAAACAAAGCGTGT-TTCTCAGTTTAGTTTAGAACTAAAACCCCACAAGA  Raphanus raphanistrum subsp. maritimus

               1151   -   1201
UN09269        --> GTATTGAATAATAAACCACCACCACCATAAGAAAATACTGCAAGAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- GTATTGAATAATAAACCACCACCACCATAAGAAAATACTGCAAGAAAAGA
EV571972       <-- GTATTGAATAATAAACCACCACCACCATAAGAAAATACTGCAAGAAAAGA
EX752756       <-- GTATTGAATAATAAACCACCACCCCCATAAGAAAATACTGCAAGAAAAGA
FD539590       <-- GTATTGAATAATAAACCACCACCACCATAAGAAAATACTGCAAGAAAAGA
FD960360       <-- GTATTGAATAATAAACCACCACCACCATAAGAAAATACTGCAAGAAAAGA
EX767360       <-- GTATTGAATAATAAACCACCACCACCATAAGAAAATACTGCAAGAAAAGA
EY919089       <-- GTATTGAATAATAAACCACCACCACCATAAGAAAATACTGCAAGAAAAGA
EY923281       --> ..................................................
EY900836       --> ..................................................
FD964313       --> ..................................................
FD543839       --> ..................................................
EX748948       --> GTATTGAATAATAAACCACCACCACCATAAGAAAATACTGCAAGAAAAGA

               1201   -   1251
UN09269        --> AAAGAGAAAAAAATGTTAATTTCTTTTATCAGCAGTGGCTGTTGGCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- AAAGAGAAAAAAATGTTAATTTCTTTTATCAGCAGTGGCTGTTGGCTGCT
EV571972       <-- AAAGAGAAAAAAATGTTAATTTCTTTTATCAGCAGTGGCTGTTGGCTGCT
EX752756       <-- AAAGAGAAAAAAA.....................................
FD539590       <-- AAAGAGAAAAAAATGTTAATTTCTTTTATCAGCAGTGGCTGTTGGCTGCT
FD960360       <-- AAAGAGAAAAAAATGTTAATTTCTTTTATCAGCAGTGGCTGTTGGCTGCT
EX767360       <-- AAA-AGAAAAAAATGTTAATTTCTTTTATCAGCAGTGGCTGTTGGCTGCT
EY919089       <-- AAAGAGAAAAAAATGTTAATTTTTTTTATCAGCAGTGGCTGTTGGCTGCT
EY923281       --> ..................................................
EY900836       --> ..................................................
FD964313       --> ..................................................
FD543839       --> ..................................................
EX748948       --> AA-GAGAAAAAA-TGTTAATTTCTTTTATCAGCAGTGGCTGTTGGCT...

               1251   -   1301
UN09269        --> TTATTTGTTTTGAGATATTCTTGTTTTTTGCTATGACAAGCT-ACAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- TTATTTGTTTTGAGATATTCTTGTTTTTTGCTATGACAAGCT-ACAAAGC
EV571972       <-- TTATTTGTTTTGAGATATTCTTGTTTTTTGCTATGACAAGCT-ACAAAGC
EX752756       <-- ..................................................
FD539590       <-- TTATTTGTTTTGAGATATTCTTGTTTTTTGCTATGACAAGCTTACAAAGC
FD960360       <-- TTATTTGTTTTGAGATATTCTTGTTTTTTGCTATGACAAGCT-ACAAAGC
EX767360       <-- TTATTTGTTTTGAGATATTCTTGTTTTTTGCTATGACAAGCT-ACAAAGC
EY919089       <-- TTATTTGTTTTGAGATATTCTTGTTTTTTGCTATGACAAGCT-ACAAAGC
EY923281       --> ..................................................
EY900836       --> ..................................................
FD964313       --> ..................................................
FD543839       --> ..................................................
EX748948       --> ..................................................

               1301   -   1351
UN09269        --> TAATAAGATATTACAGTTACTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~
EV571249       <-- TAATAAGATATTACAGTTACTTgg
EV571972       <-- TAATAAGATATTACAGTTACTTgg
EX752756       <-- ........................
FD539590       <-- TAATAAGATATTACAGTTACTTAG
FD960360       <-- TAATAAGATATTACAGTTACc...
EX767360       <-- TAATAAGATATTACAGTTACTT..
EY919089       <-- TA......................
EY923281       --> ........................
EY900836       --> ........................
FD964313       --> ........................
FD543839       --> ........................
EX748948       --> ........................