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Alignment for radish unigene UN09304

               1      -     51
UN09304        --> CATAATACAAAACTTTTATTATGCAATCAGAACGATCCTTACTCAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- CATAATACAAAACTTTTATTATGCAATCAGAACGATCCTTACTCAAAAAA
EV529204       <-- ..TAATACAAAACTTTTATTATGCAATCAGAACGATCCTTACTCAAAAAA
EX770423       <-- .......................................gACTCAAAAAA
FD556727       <-- ..................................................
EY925149       <-- ..................................................
EV572219       --> CATAATACAAAACTTTTATTATGCAATCAGAACGATCCTTACTCAAAAAA
EV533008       --> ctTAATACAAAACTTTTATTATGCAATCAGAACGATCCTTACTCAAAAAA
FD552976       --> ...AATACAAAACTTTTATTATGCAATCAGAACGATCCTTACTCAAAAAA
EY920686       --> ...gATACAAAACTTTTATTATGCAATCAGAACGATCCTTACTCAAAAAA
FD555182       --> ...agTACAAAACTTTTATTATGCAATCAGAACGATCCTTACTCAAAAAA
EX767087       --> ....................ATGCAATCAGAACGATCCTTACTCAAAAAA
EV547157       --> ......................GCAATCAGAACGATCCTTACTCAAAAAA
FD983376       --> .............................tttttttatttttTCAAAAAA
EY895102       --> ..........................................caAAAAAA
EX774617       --> ...............................................AAA

               51     -    101
UN09304        --> AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
EV529204       <-- AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
EX770423       <-- AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
FD556727       <-- ..................................................
EY925149       <-- ..................................................
EV572219       --> AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
EV533008       --> AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
FD552976       --> AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
EY920686       --> AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
FD555182       --> AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
EX767087       --> AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
EV547157       --> AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
FD983376       --> AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
EY895102       --> AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA
EX774617       --> AGATAATTATTTCTCATTTAAACAAAGCTACTCATTGAGTCATTTCCCCA

               101    -    151
UN09304        --> AGAGAAGAAAATAACTTAAAAACATCGCAGATAGATAGATGGGGGACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- AGAGAAGAAAATAACTTAAAAACATCGCAGATAGATAGATGGGGGACAAG
EV529204       <-- AGAGAAGAAAATAACTTAAAAACATCGCAGATAGATAGATGGGGGACAAG
EX770423       <-- AGAGAAGAAAATAACTTAAAAACATCGCAGATAGATAGATGGGGGACAAG
FD556727       <-- ..............tactAAAACATCGCAGATAGATAGATGG--GAC-AG
EY925149       <-- ..........................GCAGATAGATAGATGGGG-ACAAG
EV572219       --> AGAGAAGAAAATAACTTAAAAACATCGCAAATAGATAGATGGGGGACAAG
EV533008       --> AGAGAAAAAAATAACTTAAAAACATCGCAAATAGATAGATGGGGGACAAG
FD552976       --> AGAGAAGAAAATAACTTAAAAACATCGCAGATAGATAGATGGGGGACAAG
EY920686       --> AGAGAAGAAAATAACTTAAAAACATCGCAGATAGATAGATGGGGGACAAG
FD555182       --> AGAGAAGAAGATAACTTAAAAACATCGCAGATAGATAGATGGGGGACAGG
EX767087       --> AGAGAAGAAAATAACTTAAAAACATCGTAGATAGATAGATGGGGGACAAG
EV547157       --> AGAGAAGAAAATAACTTAAAAACATCGCAGATAGATAGATGGGGGGCAAG
FD983376       --> AGAGAAGAAAATAACTTAAAAACATCGCAGATAGATAGATGGGGGACAAG
EY895102       --> AGAGAAGAAAATAACTTAAAAACATCGCAAATAGATAGATGGGGGACAAG
EX774617       --> AGAGAAGAAAATAACTTAAAAACATCGCAGATAGATAGATGGGGGACAAG

               151    -    201
UN09304        --> AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
EV529204       <-- AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
EX770423       <-- AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
FD556727       <-- AGATACACATGTGACATGTGCA-C-TCA-TACACCATGAG-CCCTCAG-T
EY925149       <-- AGACACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
EV572219       --> AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
EV533008       --> AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
FD552976       --> AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
EY920686       --> AGACACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
FD555182       --> AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
EX767087       --> GGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGG
EV547157       --> AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
FD983376       --> AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
EY895102       --> AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT
EX774617       --> AGATACACATGTGACATGTGCAACTTCATTACACCATGAGGCCCTCAGGT

               201    -    251
UN09304        --> GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
EV529204       <-- GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
EX770423       <-- GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
FD556727       <-- GCAGCAGCAGCAGCAGC-TTAGGTTTAGGCTTATCAACAACGATAGC-TG
EY925149       <-- GCAGCAGCAGCAGCAGCTTTAGGTTTAGGCTTATCAACAACGATAGCCTG
EV572219       --> GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
EV533008       --> GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
FD552976       --> GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
EY920686       --> GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
FD555182       --> GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
EX767087       --> GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
EV547157       --> GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
FD983376       --> GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
EY895102       --> GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG
EX774617       --> GCAGCAGCAGCAGCAGCCTTAGGTTTAGGCTTATCAACAACGATAGCCTG

               251    -    301
UN09304        --> AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- AGTGGTCAGCACCATCCCTGCAACCGAAGCGGCGTTCTGAAGCGCACATC
EV529204       <-- AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
EX770423       <-- AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
FD556727       <-- AGTGGTCAGCACCATCCCTGCA-CCGAAGCAGCGTTCTGAAGCGCACATC
EY925149       <-- AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
EV572219       --> AGTGGTCAGCACCATCCCTGCAACCGAAGCGGCGTTCTGAAGCGCACATC
EV533008       --> AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
FD552976       --> AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
EY920686       --> AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
FD555182       --> AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
EX767087       --> AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
EV547157       --> AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
FD983376       --> AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
EY895102       --> AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC
EX774617       --> AGTGGTCAGCACCATCCCTGCAACCGAAGCAGCGTTCTGAAGCGCACATC

               301    -    351
UN09304        --> TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
EV529204       <-- TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
EX770423       <-- TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
FD556727       <-- TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
EY925149       <-- TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
EV572219       --> TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
EV533008       --> TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
FD552976       --> TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
EY920686       --> TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
FD555182       --> TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
EX767087       --> TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
EV547157       --> TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
FD983376       --> TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
EY895102       --> TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG
EX774617       --> TGGTCACTTTAGCCGGATCAATCACTCCAGCTTCCAACAGATTCTCATAG

               351    -    401
UN09304        --> GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
EV529204       <-- GTATCAGTCATGGC---GTACCCTAGCTCCCATTCACTGAACATAATCTT
EX770423       <-- GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCA..............
FD556727       <-- GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
EY925149       <-- GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
EV572219       --> GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
EV533008       --> GTATCAGTCATGGCGT---ACCCTAGCTCCCATTCACTGAACATAATCTT
FD552976       --> GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
EY920686       --> GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
FD555182       --> GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
EX767087       --> GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
EV547157       --> GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
FD983376       --> GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
EY895102       --> GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCACTGAACATAATCTT
EX774617       --> GTATCAGTCATGGCGTTGTACCCTAGCTCCCATTCA..............

               401    -    451
UN09304        --> CTCCACCACAACTTCTCCTTCAATCCCAGCGTTCTGCGCAATAAGTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- CTCCACCACAACTTCTCCTTCAATCCCAGCGTTCTGCGCAATAAGTGCTG
EV529204       <-- CTCCACCACAACTTCTCCTTCAATCCCAGCGTTCTGCGCAATAAGTGCTG
EX770423       <-- ..................................................
FD556727       <-- CTCCACCACAACTTCTCCTTCAATCCAAGCGTTCTGCGCAATAAGTGCTG
EY925149       <-- CTCCACCACAACTTCTCCTTCAATCCCAGCGTTCTGCGCAATAAGTGCTG
EV572219       --> CTCCACCACAACTTCTCCTTCAATCCCAGCGTTCTGCGCAATAAGTGCTG
EV533008       --> CTCCACCACAACTTCTCCTTCAATCCCAGCGTTCTGCGCAATAAGTGCTG
FD552976       --> CTCCACCACAACTTCTCCTTCAATCCAAGCGTTCTGCGCAATAAGTGCTG
EY920686       --> CTCCACCACAACTTCTCCTTCAATCCCAGCGTTCTGCGCAATAAGTGCTG
FD555182       --> CTCCACCACAACTTCTCCTTCAATCCCAGCGTTCTGCGCAATAAGTGCTG
EX767087       --> CTCCACCACAACTTCTCCTTCGATCCCAGCGTTCTGCGCAATAAGTGCTG
EV547157       --> CTCCACCACAACTTCTCCTTCAATCCCAGCGTTCTGCGCAATAAGTGCTG
FD983376       --> CTCCACCACAACTTCTCCTTCAATCCCAGCGTTCTGCGCAATAAGTGCTG
EY895102       --> CTCCACCACAACTTCTCCTTCAATCCCAGCGTTCTGCGCAATAAGTGCTG
EX774617       --> ..................................................

               451    -    501
UN09304        --> CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
EV529204       <-- CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
EX770423       <-- ..................................................
FD556727       <-- CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
EY925149       <-- CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
EV572219       --> CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
EV533008       --> CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
FD552976       --> CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
EY920686       --> CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
FD555182       --> CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
EX767087       --> CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
EV547157       --> CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
FD983376       --> CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
EY895102       --> CTGGTGCCACCAATGCCTTCTGTACTATATCAGCTCCAAGACGTTCATCA
EX774617       --> ..................................................

               501    -    551
UN09304        --> GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
EV529204       <-- GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
EX770423       <-- ..................................................
FD556727       <-- GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
EY925149       <-- GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
EV572219       --> GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
EV533008       --> GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
FD552976       --> GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
EY920686       --> GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
FD555182       --> GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
EX767087       --> GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
EV547157       --> GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
FD983376       --> GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
EY895102       --> GCGTCCTCAAACGTCTCCTTAATGGCAGGGATAACAGTGGAGAGATGCAC
EX774617       --> ..................................................

               551    -    601
UN09304        --> CAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- CAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAGG
EV529204       <-- CAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAGG
EX770423       <-- ..................................................
FD556727       <-- CAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAGG
EY925149       <-- CAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAGG
EV572219       --> CAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAGG
EV533008       --> CAGA..............................................
FD552976       --> CAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAGG
EY920686       --> C.................................................
FD555182       --> CAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGACAGCAGCAAAGG
EX767087       --> CAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAGG
EV547157       --> CAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATGGCAGCAAAGG
FD983376       --> CAGAGTCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAGG
EY895102       --> CAGAGCCGCACCACCACCGGGGACTATCCCTTCCTCGATAGCAGCAAAGG
EX774617       --> ..................................................

               601    -    651
UN09304        --> TAGCGTTCTTCGCGTCCTCGATACGAAGCTTACGGTCCTCGAGCTCGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- TAGCGTTCTTCGCGTCCTCGATACGAAGCTTACGGTCCTCGAGCTCGGTT  Raphanus raphanistrum subsp. landra
EV529204       <-- TCGCGTTCTTTGCGTCCTCGATACGAAGCTTACGGTCCTCCAGCTCGGTT  Raphanus raphanistrum subsp. maritimus
EX770423       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD556727       <-- TAGCGTTCTTCGCGTCCTCGATACGAAGCTTACGGTCCTCGAGCTCGGTT  Raphanus raphanistrum subsp. landra
EY925149       <-- TAGCGTTCTTCGCGTCCTCGATACGAAGCTTACGGTCCTCGAGCTCGGTT  Raphanus raphanistrum subsp. landra
EV572219       --> TAGC..............................................  Raphanus raphanistrum subsp. landra
EV533008       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD552976       --> TAGCGTTCTTCGCGTCCTCGATACGAAGCTTACGGTCCTCGAGCTCGGTT  Raphanus raphanistrum subsp. landra
EY920686       --> ..................................................  Raphanus raphanistrum subsp. landra
FD555182       --> TAGCGTTCTTCGCGTCCTCGATACGAAGCTTACGGTCCTCGAGCTCGGTT  Raphanus raphanistrum subsp. landra
EX767087       --> TCGCGTTCTTTGCGTCCTCGATACGAAGCTTACGGTCCTCCAGCTCGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547157       --> TCGCGTTCTTTGCGTCCTCGATACGAAGCTTACGGTCCTCCAGCTCGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983376       --> TAGCGTTCTTCGCGTCCTCGATACGAAGCTTACGGTCCTCGAGCTCGGTT  Raphanus raphanistrum subsp. landra
EY895102       --> TCGCGTTCTTTGCGTCCTCGATACGAAGTTTACGGTCCTCCAGCTCGGTT  Raphanus raphanistrum subsp. maritimus
EX774617       --> ..................................................  Raphanus raphanistrum subsp. landra

               651    -    701
UN09304        --> TCAGTCGCTGCTCCGACTTTAATGACGGCAACACCACCAGAGAGTTTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- TCAGTCGCTGCTCCGACTTTAATGAC........................
EV529204       <-- TCAGTCGCTGCTCCGACTTTAATGACGGCAACACCACCAGAGAGTTTGGC
EX770423       <-- ..................................................
FD556727       <-- TCAGTCGCTGCTCCGACTTTAATGACGGCAACACCACCAGAGAGTTTGGC
EY925149       <-- TCAGTCGCTGCTCCGACTTTAATGACGGCAACACCACCAGAGAGTTTGGC
EV572219       --> ..................................................
EV533008       --> ..................................................
FD552976       --> TCAGTCGCTGCTCCGACTTTAATGACGGCAACACCACCAGAGAGTTTGGC
EY920686       --> ..................................................
FD555182       --> TCAGTCGCTGCTCCGACTTTAATGACGGCAACACCACCAGAGAGTTTGGC
EX767087       --> TCAGTCGCTGCTCCGACTTTAATGACGGCAACACCACCAGAGAGTTTGGC
EV547157       --> TCAGTCGCTGCTCCGACTTTAATGACGGCAACACCACCAGAGAGTTTGGC
FD983376       --> TCAGTCGCTGCTCCGACTTTAATGACGGCAACACCACCAGAGAGT.....
EY895102       --> TCAGTCGCTGCTC.....................................
EX774617       --> ..................................................

               701    -    751
UN09304        --> TATTCTCTCAGCGAGCTTCTCCGAGTCGTACACAGAGTCAGTCTCGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- ..................................................
EV529204       <-- TATTCTCTCAGCGAGCTTCTCCGAGTCGTACACAGAGTCAGTCTCGAACA
EX770423       <-- ..................................................
FD556727       <-- TATTCTCTCAGCGAGCTTCTCCGAGTCGTACACAGAGTAAGTCTCGAACA
EY925149       <-- TATTCTCTCAGCGAGCTTCTCCGAGTCGTACACAGAGTCAGTCTCGAACA
EV572219       --> ..................................................
EV533008       --> ..................................................
FD552976       --> TATTCTCTCAGCGAGCTTCTCCGAGTCGTACACAGAGTAAGTCTC.....
EY920686       --> ..................................................
FD555182       --> TATTCTCTCAGCGAGCTTCc..............................
EX767087       --> TATTCTCTCAGCGAGCTTCTCCGAGTCGTACACAGAGTCAGTCTCGAACA
EV547157       --> TATTCTCTCAGCGAGCTTCTCCGAGTCGTACACAGAGTCAGTCTCGAACA
FD983376       --> ..................................................
EY895102       --> ..................................................
EX774617       --> ..................................................

               751    -    801
UN09304        --> GTTCCTTCTTCAGCTGGGAGATACGAGCTTGCAACTCGTCCTTGGAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- ..................................................
EV529204       <-- c.................................................
EX770423       <-- ..................................................
FD556727       <-- GTTCCTTCTTCAGCTGGGAGATACGAGCTTGCAACTCGTCCTTGGAAGCC
EY925149       <-- GTTCCTTCTTCAGCTGG-AGATACGAGCTTGCAACTCGTCCTTGGAAGCC
EV572219       --> ..................................................
EV533008       --> ..................................................
FD552976       --> ..................................................
EY920686       --> ..................................................
FD555182       --> ..................................................
EX767087       --> GTTCCTTCTT........................................
EV547157       --> GTTCCTTCTTCAGCTGAGAGATACGAGCTTGCAACTCGTCCTTGGAAGCC
FD983376       --> ..................................................
EY895102       --> ..................................................
EX774617       --> ..................................................

               801    -    851
UN09304        --> GCATCTGCGATCAGCGTAGTCGAGTCTTTGCTTATGGTCACTTTACGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- ..................................................
EV529204       <-- ..................................................
EX770423       <-- ..................................................
FD556727       <-- GCATCTGCGATCAGCGTAGTCGAGTCTTTGCTTATGGTCACTTTACGTGC
EY925149       <-- GCATCTGCGATCAGCGTAGTCGAGTCTTTGCTTATGGTCACTTc......
EV572219       --> ..................................................
EV533008       --> ..................................................
FD552976       --> ..................................................
EY920686       --> ..................................................
FD555182       --> ..................................................
EX767087       --> ..................................................
EV547157       --> GCATCTGCGATAAGCGTAGTCGAGTCTTTGCTTATGGTCACTTTACGTGC
FD983376       --> ..................................................
EY895102       --> ..................................................
EX774617       --> ..................................................

               851    -    901
UN09304        --> AATACCCAACTGATCTATGGTTGTGTTTTCCACCAGCAGGCCCATGTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- ..................................................
EV529204       <-- ..................................................
EX770423       <-- ..................................................
FD556727       <-- AATACCCAACTGATCTATGGTTGTGTTTTCCACCAGCAGGCCCATGTCAA
EY925149       <-- ..................................................
EV572219       --> ..................................................
EV533008       --> ..................................................
FD552976       --> ..................................................
EY920686       --> ..................................................
FD555182       --> ..................................................
EX767087       --> ..................................................
EV547157       --> AATACCCAACTGATCTATGGTTGTG.........................
FD983376       --> ..................................................
EY895102       --> ..................................................
EX774617       --> ..................................................

               901    -    951
UN09304        --> GGGCTTGGTACTCAGCTCCTGTCAAGATTGCGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV567241       <-- ...................................
EV529204       <-- ...................................
EX770423       <-- ...................................
FD556727       <-- GGGCTTGGTACTCAGCTCCTGTCAAGATTGCGATC
EY925149       <-- ...................................
EV572219       --> ...................................
EV533008       --> ...................................
FD552976       --> ...................................
EY920686       --> ...................................
FD555182       --> ...................................
EX767087       --> ...................................
EV547157       --> ...................................
FD983376       --> ...................................
EY895102       --> ...................................
EX774617       --> ...................................